mRNA_3796 (mRNA) Tribonema minus UTEX_B_3156

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
Namejgi.p|Trimin1|160079
Unique NamemRNA_3796
TypemRNA
OrganismTribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Homology
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BLAST of jgi.p|Trimin1|160079 vs. uniprot
Match: A0A835ZDM3_9STRA (HSF-type DNA-binding-domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZDM3_9STRA)

HSP 1 Score: 261 bits (668), Expect = 1.910e-88
Identity = 131/131 (100.00%), Postives = 131/131 (100.00%), Query Frame = 1 
Query:    1 MQRDAPSFGRRVSTAEQSNLQAATTSSVKRGAPALFLSALVDILRGGYEDIIAWNPSGTCFMIRDAERFSDEVLVHHFKHNKLSSFQRQLNLYGFRKISRGPDAGAYAHEHFLRDRPEDIQVMAMSSRAEV 393
            MQRDAPSFGRRVSTAEQSNLQAATTSSVKRGAPALFLSALVDILRGGYEDIIAWNPSGTCFMIRDAERFSDEVLVHHFKHNKLSSFQRQLNLYGFRKISRGPDAGAYAHEHFLRDRPEDIQVMAMSSRAEV
Sbjct:    1 MQRDAPSFGRRVSTAEQSNLQAATTSSVKRGAPALFLSALVDILRGGYEDIIAWNPSGTCFMIRDAERFSDEVLVHHFKHNKLSSFQRQLNLYGFRKISRGPDAGAYAHEHFLRDRPEDIQVMAMSSRAEV 131
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BLAST of jgi.p|Trimin1|160079 vs. uniprot
Match: A0A7S2G7U9_9STRA (Hypothetical protein (Fragment) n=1 Tax=Florenciella parvula TaxID=236787 RepID=A0A7S2G7U9_9STRA)

HSP 1 Score: 117 bits (294), Expect = 1.360e-30
Identity = 53/92 (57.61%), Postives = 68/92 (73.91%), Query Frame = 1 
Query:   85 KRGAPALFLSALVDILRGGYEDIIAWNPSGTCFMIRDAERFSDEVLVHHFKHNKLSSFQRQLNLYGFRKISRGPDAGAYAHEHFLRDRPEDI 360
            +RGAP +F   L +IL     D+I W  SG  F+I + E F +E+L+++F+H K SSFQRQLNLYGFRKI +GPD GAYAHEHFLRD+PE +
Sbjct:  100 RRGAPQVFPRKLYEILTNERSDVIGWTSSGKSFIILEMEIFVNEILMNYFRHQKYSSFQRQLNLYGFRKIQKGPDTGAYAHEHFLRDQPESL 191
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BLAST of jgi.p|Trimin1|160079 vs. uniprot
Match: A0A7S2BSE7_9STRA (Hypothetical protein (Fragment) n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2BSE7_9STRA)

HSP 1 Score: 107 bits (267), Expect = 2.540e-27
Identity = 49/90 (54.44%), Postives = 64/90 (71.11%), Query Frame = 1 
Query:   85 KRGAPALFLSALVDILRGGYEDIIAWNPSGTCFMIRDAERFSDEVLVHHFKHNKLSSFQRQLNLYGFRKISRGPDAGAYAHEHFLRDRPE 354
            +RGAP +F   L +IL    EDII W  SG  F+I++ E F   +L+ +F+H K SSFQRQLNLYGFRK+ +G D G+YAHE F+RD+PE
Sbjct:    8 RRGAPQVFPRKLYEILSTEREDIIGWTDSGKSFIIKEMETFVTNILMKYFRHQKYSSFQRQLNLYGFRKVQKGTDVGSYAHECFIRDQPE 97
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BLAST of jgi.p|Trimin1|160079 vs. uniprot
Match: A0A6V2VRS5_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A6V2VRS5_HETAK)

HSP 1 Score: 112 bits (281), Expect = 4.620e-27
Identity = 55/94 (58.51%), Postives = 67/94 (71.28%), Query Frame = 1 
Query:   88 RGAPALFLSALVDILRGGYEDIIAWNPSGTCFMIRDAERFSDEVLVHHFKHNKLSSFQRQLNLYGFRKISRGPDAGAYAHEHFLRDRPEDIQVM 369
            RGAP +F   L  IL    +D+I WN  GT F I+D +RFS EVL+ +F+HN  SSFQRQ+NLYGF+KISRGP AGA  H+ FLR RP D+ VM
Sbjct:   16 RGAPQVFARKLYQILLTESKDVICWNEPGTAFFIKDMDRFSQEVLMKYFRHNNYSSFQRQMNLYGFKKISRGPFAGANMHQQFLRGRP-DLLVM 108
[Close]
BLAST of jgi.p|Trimin1|160079 vs. uniprot
Match: A0A6V1QFS1_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A6V1QFS1_HETAK)

HSP 1 Score: 111 bits (277), Expect = 2.110e-26
Identity = 48/98 (48.98%), Postives = 72/98 (73.47%), Query Frame = 1 
Query:   85 KRGAPALFLSALVDILRGGYEDIIAWNPSGTCFMIRDAERFSDEVLVHHFKHNKLSSFQRQLNLYGFRKISRGPDAGAYAHEHFLRDRPEDIQVMAMS 378
            +RGAP  F   L +IL     D+++WN +G  F +RD +RFS E+L+ +F+H+K +SFQRQLNLYGFRKI+RG DAG+YAH++F + +P+ + ++  S
Sbjct:    8 QRGAPQAFARKLYEILEVEPGDLLSWNAAGNAFFVRDIDRFSKEILMKYFRHSKFASFQRQLNLYGFRKITRGSDAGSYAHQYFRKGKPDLLSLVRRS 105
[Close]
BLAST of jgi.p|Trimin1|160079 vs. uniprot
Match: A0A835Z6Z9_9STRA (HSF-type DNA-binding-domain-containing protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z6Z9_9STRA)

HSP 1 Score: 102 bits (253), Expect = 1.070e-25
Identity = 47/92 (51.09%), Postives = 63/92 (68.48%), Query Frame = 1 
Query:   85 KRGAPALFLSALVDILRGGYEDIIAWNPSGTCFMIRDAERFSDEVLVHHFKHNKLSSFQRQLNLYGFRKISRGPDAGAYAHEHFLRDRPEDI 360
            KRGAP  F   L ++L+     +++W  +G  F+I D + F +  LV +F+HNK +SFQRQ NLYGFRKI+RGPDAG Y HEHF + R ED+
Sbjct:    2 KRGAPQAFPRRLYELLQEEDASVVSWIKNGEGFIINDMDTFVNTTLVKYFQHNKYTSFQRQCNLYGFRKITRGPDAGMYIHEHFKKGRLEDL 93
[Close]
BLAST of jgi.p|Trimin1|160079 vs. uniprot
Match: A0A6H5KMN3_9PHAE (HSF_DOMAIN domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KMN3_9PHAE)

HSP 1 Score: 109 bits (272), Expect = 3.630e-25
Identity = 49/92 (53.26%), Postives = 64/92 (69.57%), Query Frame = 1 
Query:   85 KRGAPALFLSALVDILRGGYEDIIAWNPSGTCFMIRDAERFSDEVLVHHFKHNKLSSFQRQLNLYGFRKISRGPDAGAYAHEHFLRDRPEDI 360
            KRGAP  F   L +IL       I+WN +G+ F + D ERFS+++L  +++H+K SSFQRQLNLY FRKI +G DAG YAH  F RDRP+D+
Sbjct:   36 KRGAPQAFARKLAEILATESTATISWNANGSAFQVHDVERFSEDILTKYYRHSKFSSFQRQLNLYSFRKIVKGADAGGYAHPMFRRDRPDDL 127
[Close]
BLAST of jgi.p|Trimin1|160079 vs. uniprot
Match: A0A7S2WU52_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2WU52_9STRA)

HSP 1 Score: 108 bits (270), Expect = 5.310e-25
Identity = 56/106 (52.83%), Postives = 72/106 (67.92%), Query Frame = 1 
Query:   85 KRGAPALFLSALVDILRGGYEDIIAWNPSGTCFMIRDAERFSDEVLVHHFKHNKLSSFQRQLNLYGFRKISRGPDAGAYAHEHFLRDRPE---DIQVMAMSSRAEV 393
            KRGAP +F   L +IL     D I+W  SGT F+I++ + F   VL+ +F+H K SSFQRQLNLYGFRKIS+G DAGAYAHE F+R +PE    ++ M  SS + V
Sbjct:  162 KRGAPQVFARKLYEILDNEPPDAISWTTSGTSFVIKEMDAFVTCVLMKYFRHQKYSSFQRQLNLYGFRKISKGSDAGAYAHESFIRGQPELLHFVRRMPQSSSSPV 267
[Close]
BLAST of jgi.p|Trimin1|160079 vs. uniprot
Match: A0A7S2CXJ7_9STRA (Hypothetical protein (Fragment) n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2CXJ7_9STRA)

HSP 1 Score: 107 bits (268), Expect = 8.320e-25
Identity = 50/87 (57.47%), Postives = 65/87 (74.71%), Query Frame = 1 
Query:   85 KRGAPALFLSALVDILRGGYEDIIAWNPSGTCFMIRDAERFSDEVLVHHFKHNKLSSFQRQLNLYGFRKISRGPDAGAYAHEHFLRD 345
            +RGAP +F   L +IL     DII+W  +GT F+I++ + F +E+L+ +F+H K SSFQRQLNLYGFRKI +GPD GAYAHE FLRD
Sbjct:   78 RRGAPQVFPRKLYEILTLESSDIISWTENGTSFVIQEMDDFVNEILMKYFRHRKYSSFQRQLNLYGFRKIQKGPDTGAYAHEGFLRD 164
[Close]
BLAST of jgi.p|Trimin1|160079 vs. uniprot
Match: B8CB26_THAPS (HSF_DOMAIN domain-containing protein (Fragment) n=1 Tax=Thalassiosira pseudonana TaxID=35128 RepID=B8CB26_THAPS)

HSP 1 Score: 102 bits (255), Expect = 8.980e-25
Identity = 45/83 (54.22%), Postives = 62/83 (74.70%), Query Frame = 1 
Query:  106 FLSALVDILRGGYEDIIAWNPSGTCFMIRDAERFSDEVLVHHFKHNKLSSFQRQLNLYGFRKISRGPDAGAYAHEHFLRDRPE 354
            F   L+D+L      +++W P+G  FM+RD ERF  ++L  +F+H KL+SFQRQLNLYGFR+I++GPD GAY HE FLRD+P+
Sbjct:   39 FPRKLMDMLTKEDSAVVSWLPTGDAFMVRDNERFVGDILPRYFRHTKLTSFQRQLNLYGFRRITKGPDQGAYRHEWFLRDQPD 121
The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|160079 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A835ZDM3_9STRA1.910e-88100.00HSF-type DNA-binding-domain-containing protein n=1... [more]
A0A7S2G7U9_9STRA1.360e-3057.61Hypothetical protein (Fragment) n=1 Tax=Florenciel... [more]
A0A7S2BSE7_9STRA2.540e-2754.44Hypothetical protein (Fragment) n=1 Tax=Dictyocha ... [more]
A0A6V2VRS5_HETAK4.620e-2758.51Hypothetical protein n=1 Tax=Heterosigma akashiwo ... [more]
A0A6V1QFS1_HETAK2.110e-2648.98Hypothetical protein n=1 Tax=Heterosigma akashiwo ... [more]
A0A835Z6Z9_9STRA1.070e-2551.09HSF-type DNA-binding-domain-containing protein (Fr... [more]
A0A6H5KMN3_9PHAE3.630e-2553.26HSF_DOMAIN domain-containing protein n=1 Tax=Ectoc... [more]
A0A7S2WU52_9STRA5.310e-2552.83Hypothetical protein n=1 Tax=Rhizochromulina marin... [more]
A0A7S2CXJ7_9STRA8.320e-2557.47Hypothetical protein (Fragment) n=1 Tax=Dictyocha ... [more]
B8CB26_THAPS8.980e-2554.22HSF_DOMAIN domain-containing protein (Fragment) n=... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Contig_12contigContig_12:1024083..1025356 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Tribonema minus UTEX_B_31562021-06-17
Properties
Property NameValue
ProteomeIdTrimin1|160079|e_gw1.12.35.1
Descriptionheat shock factor
COG categoryK
Max annot lvl2836|Bacillariophyta
EggNOG OGsCOG5169@1|root,KOG0627@2759|Eukaryota,2XG5V@2836|Bacillariophyta
Evalue1.47e-25
Seed ortholog35128.Thaps263978
Hectar predicted targeting categoryother localisation
TranscriptId160401
TrackFilteredModels1
ProteinId160079
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|160079gene_3796Tribonema minus UTEX_B_3156 geneContig_12 1024083..1025356 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|160079Trimin1|160079|e_gw1.12.35.1Tribonema minus UTEX_B_3156 polypeptideContig_12 1024083..1025356 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
exon_3796_3exon_3796_3Tribonema minus UTEX_B_3156 exonContig_12 1024083..1024187 -
exon_3796_2exon_3796_2Tribonema minus UTEX_B_3156 exonContig_12 1024806..1024904 -
exon_3796_1exon_3796_1Tribonema minus UTEX_B_3156 exonContig_12 1025165..1025356 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
CDS_3796CDS_3796Tribonema minus UTEX_B_3156 CDSContig_12 1025165..1025356 -


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>mRNA_3796 ID=mRNA_3796|Name=jgi.p|Trimin1|160079|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=396bp|location=Sequence derived from alignment at Contig_12:1024083..1025356- (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon.  
ATGCAGCGGGATGCACCATCATTTGGGCGCAGGGTCAGTACGGCCGAGCA
GAGCAACTTGCAGGCAGCGACCACCAGCAGCGTGAAGCGTGGAGCTCCAG
CGCTCTTCTTGAGCGCGCTGGTGGATATCCTGAGAGGCGGCTATGAGGAC
ATCATTGCATGGAACCCCAGTGGCACCTGCTTTATGATCAGGGATGCGGA
GCGCTTTTCGGATGAGGTCCTAGTGCATCACTTCAAGCACAACAAGCTCT
CCAGCTTCCAGAGGCAGCTCAATCTCTATGGCTTCCGAAAGATCAGCAGG
GGCCCGGACGCCGGCGCGTACGCTCACGAGCACTTCCTGCGCGACAGGCC
GGAGGACATACAGGTGATGGCGATGAGCAGCAGGGCCGAAGTGTGA
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protein sequence of jgi.p|Trimin1|160079

>Trimin1|160079|e_gw1.12.35.1 ID=Trimin1|160079|e_gw1.12.35.1|Name=jgi.p|Trimin1|160079|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=132bp
MQRDAPSFGRRVSTAEQSNLQAATTSSVKRGAPALFLSALVDILRGGYED
IIAWNPSGTCFMIRDAERFSDEVLVHHFKHNKLSSFQRQLNLYGFRKISR
GPDAGAYAHEHFLRDRPEDIQVMAMSSRAEV*
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mRNA from alignment at Contig_12:1024083..1025356-

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_3796 ID=mRNA_3796|Name=jgi.p|Trimin1|160079|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=1274bp|location=Sequence derived from alignment at Contig_12:1024083..1025356- (Tribonema minus UTEX_B_3156 )
ATGCAGCGGGATGCACCATCATTTGGGCGCAGGGTCAGTACGGCCGAGCA
GAGCAACTTGCAGGCAGCGACCACCAGCAGCGTGAAGCGTGGAGCTCCAG
CGCTCTTCTTGAGCGCGCTGGTGGATATCCTGAGAGGCGGCTATGAGGAC
ATCATTGCATGGAACCCCAGTGGCACCTGCTTTATGATCAGGGTGGGTGT
TGCATCTGCCAGTGCAAGTGTGGTATCTGATGATTGGCTGTTGTTCCTGT
ACCACTGCTCTGGCCGTTGTGCGACGGCAGCCATTTTGCTAGCAGGCTGT
TCGTGTGTGGCTGATGTTCAGACAGTTAGGCTGCTGTTGGCGACCTCTAC
GTGCCATCCGCAGCCATGTTGTGGCAAGGCAATTGGCGCTTTGTCCGCGT
TTGAAGTAGCTGCGTGGTTCTGATCGGGGCCATGCTCGCTGGTGCGATGC
AGGATGCGGAGCGCTTTTCGGATGAGGTCCTAGTGCATCACTTCAAGCAC
AACAAGCTCTCCAGCTTCCAGAGGCAGCTCAATCTCTATGGCTTCCGAAA
GGTGAGCCAGCATAGCAAAATGCGGGGGCTCTTCTCTTGGACTCCTCATA
CCAACAGAGCGCCACACTACTTGTGCACTGAGTGAGCGCTCTCAAAGTTC
GATTGCACTGCGTTCGGGCCGTGGGCCATGCGCAGGGCCGGCACCACAGT
TGAACGTCAGCAAAGTTGCCCAACCGCGCCTCTGGCATGCTCCGATGAGC
GCGCAACGCCGCTCTGTCGTTCGCATGCATTGCATGCAGCGCGCCTGTAT
CGCGGCTGCACACGACGCGCCAGCTTTCTGCGACCTGTCACTAGCGCCTC
AGCAACTTCAGGTGCCTGCTGCGCGACCAGTGCGATTTCGGTTTCGATTT
CTCTCTACTGAGGACCACAGCACGGCTGCGCTCGCGCGAGCGCACGCCAA
CACAGCCGCCGTGCGCGCCAGCACTGGGAACGCGGACGCCGGCGGCGCTG
TCTGACGTGCCGCACGTTGAGCACTACTCACAGAGCGCTGCCGCAAACCT
GAGAGGGGAGCGCTCGCGCCGGCGGCCGCAGCGTTGTTGCGCATCGTGCC
TGGATGGTTTGCCGTGAACTCAACGGCCATGCGCGCTGGCATGCGATTGC
TGCTGCTTTGTGCGTGCAGATCAGCAGGGGCCCGGACGCCGGCGCGTACG
CTCACGAGCACTTCCTGCGCGACAGGCCGGAGGACATACAGGTGATGGCG
ATGAGCAGCAGGGCCGAAGTGTGA
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Coding sequence (CDS) from alignment at Contig_12:1024083..1025356-

>mRNA_3796 ID=mRNA_3796|Name=jgi.p|Trimin1|160079|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=396bp|location=Sequence derived from alignment at Contig_12:1024083..1025356- (Tribonema minus UTEX_B_3156 )
ATGCAGCGGGATGCACCATCATTTGGGCGCAGGGTCAGTACGGCCGAGCA
GAGCAACTTGCAGGCAGCGACCACCAGCAGCGTGAAGCGTGGAGCTCCAG
CGCTCTTCTTGAGCGCGCTGGTGGATATCCTGAGAGGCGGCTATGAGGAC
ATCATTGCATGGAACCCCAGTGGCACCTGCTTTATGATCAGGGATGCGGA
GCGCTTTTCGGATGAGGTCCTAGTGCATCACTTCAAGCACAACAAGCTCT
CCAGCTTCCAGAGGCAGCTCAATCTCTATGGCTTCCGAAAGATCAGCAGG
GGCCCGGACGCCGGCGCGTACGCTCACGAGCACTTCCTGCGCGACAGGCC
GGAGGACATACAGGTGATGGCGATGAGCAGCAGGGCCGAAGTGTGA
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