mRNA_378 (mRNA) Tribonema minus UTEX_B_3156

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
Namejgi.p|Trimin1|157306
Unique NamemRNA_378
TypemRNA
OrganismTribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Homology
[Close]
BLAST of jgi.p|Trimin1|157306 vs. uniprot
Match: A0A836CET6_9STRA (SET domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CET6_9STRA)

HSP 1 Score: 421 bits (1083), Expect = 3.370e-149
Identity = 208/208 (100.00%), Postives = 208/208 (100.00%), Query Frame = 1 
Query:    1 MGARGRSARTPSGRPGVTALLEVRPSRGKGRGLVALRDIKLGTVLPYCGVVRLEGPGVDTTYAMAAEYHDGRGRNGFVSMRGFLVDGNPKLLPGLRDSWKFAAYANEATRGPCNVVSVTNPAITHEALARSFKEERPVIVAFYVVARDIAAGEELTTHYGSGYPRKYKYEPQPPSQAQRDLAEDAAAAVVRDPPGPLLFPAYRGGTGT 624
            MGARGRSARTPSGRPGVTALLEVRPSRGKGRGLVALRDIKLGTVLPYCGVVRLEGPGVDTTYAMAAEYHDGRGRNGFVSMRGFLVDGNPKLLPGLRDSWKFAAYANEATRGPCNVVSVTNPAITHEALARSFKEERPVIVAFYVVARDIAAGEELTTHYGSGYPRKYKYEPQPPSQAQRDLAEDAAAAVVRDPPGPLLFPAYRGGTGT
Sbjct:    1 MGARGRSARTPSGRPGVTALLEVRPSRGKGRGLVALRDIKLGTVLPYCGVVRLEGPGVDTTYAMAAEYHDGRGRNGFVSMRGFLVDGNPKLLPGLRDSWKFAAYANEATRGPCNVVSVTNPAITHEALARSFKEERPVIVAFYVVARDIAAGEELTTHYGSGYPRKYKYEPQPPSQAQRDLAEDAAAAVVRDPPGPLLFPAYRGGTGT 208
[Close]
BLAST of jgi.p|Trimin1|157306 vs. uniprot
Match: A0A835Z5X5_9STRA (SET domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z5X5_9STRA)

HSP 1 Score: 79.3 bits (194), Expect = 5.200e-14
Identity = 49/140 (35.00%), Postives = 75/140 (53.57%), Query Frame = 1 
Query:   88 GRGLVALRDIKLGTVLPYCGVVRLEGPGVDTTYAMAAEYHDGRGRN-GFVSMRGFLVDGNPKLLPG-LRDSWKFAAYANEAT-RGPCNVVSVTNPAITHEALARSFKEERPVIVAFYVVARDIAAGEELTTHYGSGYPRK 498
            GRG+VA   IK GT+LP   V   E  G D +Y + + +      +   V++ G + D +PKLL G +  SW  A+Y NEA      N      P  T + +  +++    ++ A+ +V RD+A GE+L THYG+GY R+
Sbjct:  138 GRGVVARCAIKKGTMLPLAAVAIREAHGQDGSYQLDSAFISVNAVSWDTVTVDGVVFDAHPKLLRGRVHQSWALASYINEARLNADVNCELFPAPHNTADDITTAYRMGSVILGAWMIVTRDVAEGEQLLTHYGTGYTRE 277
The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|157306 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A836CET6_9STRA3.370e-149100.00SET domain-containing protein n=1 Tax=Tribonema mi... [more]
A0A835Z5X5_9STRA5.200e-1435.00SET domain-containing protein n=1 Tax=Tribonema mi... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Contig_3contigContig_3:1052872..1053498 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Tribonema minus UTEX_B_31562021-06-17
Properties
Property NameValue
ProteomeIdTrimin1|157306|e_gw1.3.395.1
Hectar predicted targeting categoryother localisation
TranscriptId157628
TrackFilteredModels1
ProteinId157306
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|157306gene_378Tribonema minus UTEX_B_3156 geneContig_3 1052872..1053498 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
exon_378_1exon_378_1Tribonema minus UTEX_B_3156 exonContig_3 1052872..1053498 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
CDS_378CDS_378Tribonema minus UTEX_B_3156 CDSContig_3 1052872..1053498 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|157306Trimin1|157306|e_gw1.3.395.1Tribonema minus UTEX_B_3156 polypeptideContig_3 1052872..1053498 +


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>mRNA_378 ID=mRNA_378|Name=jgi.p|Trimin1|157306|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=627bp|location=Sequence derived from alignment at Contig_3:1052872..1053498+ (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon.  
ATGGGCGCGAGGGGCAGGTCGGCCCGGACTCCGAGCGGGCGGCCGGGGGT
CACGGCGCTGCTGGAGGTGAGGCCCTCGAGGGGCAAGGGGAGGGGGCTCG
TTGCCCTGCGTGACATTAAACTCGGCACCGTGCTACCCTACTGCGGTGTT
GTCCGCCTGGAGGGCCCGGGCGTTGACACCACGTACGCCATGGCGGCAGA
GTATCACGACGGGAGAGGCAGGAACGGGTTCGTCAGCATGCGAGGATTTC
TCGTCGATGGCAATCCCAAGCTGCTGCCGGGTCTGCGGGACAGCTGGAAG
TTTGCGGCGTACGCCAACGAGGCGACCAGGGGTCCGTGCAACGTCGTAAG
CGTCACCAACCCCGCCATCACTCACGAGGCCCTCGCGCGGTCGTTCAAGG
AGGAGAGGCCCGTCATCGTCGCCTTCTACGTGGTCGCGAGAGATATCGCC
GCCGGCGAGGAGTTGACCACCCACTACGGCAGCGGCTACCCGCGCAAGTA
CAAGTACGAGCCGCAGCCGCCGTCGCAGGCTCAACGGGATCTGGCGGAGG
ACGCCGCCGCCGCGGTCGTCCGCGACCCTCCGGGCCCCCTCTTGTTCCCA
GCCTACAGAGGGGGCACCGGAACGTGA
back to top

protein sequence of jgi.p|Trimin1|157306

>Trimin1|157306|e_gw1.3.395.1 ID=Trimin1|157306|e_gw1.3.395.1|Name=jgi.p|Trimin1|157306|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=209bp
MGARGRSARTPSGRPGVTALLEVRPSRGKGRGLVALRDIKLGTVLPYCGV
VRLEGPGVDTTYAMAAEYHDGRGRNGFVSMRGFLVDGNPKLLPGLRDSWK
FAAYANEATRGPCNVVSVTNPAITHEALARSFKEERPVIVAFYVVARDIA
AGEELTTHYGSGYPRKYKYEPQPPSQAQRDLAEDAAAAVVRDPPGPLLFP
AYRGGTGT*
back to top

mRNA from alignment at Contig_3:1052872..1053498+

Legend: exonpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_378 ID=mRNA_378|Name=jgi.p|Trimin1|157306|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=627bp|location=Sequence derived from alignment at Contig_3:1052872..1053498+ (Tribonema minus UTEX_B_3156 )
ATGGGCGCGAGGGGCAGGTCGGCCCGGACTCCGAGCGGGCGGCCGGGGGT
CACGGCGCTGCTGGAGGTGAGGCCCTCGAGGGGCAAGGGGAGGGGGCTCG
TTGCCCTGCGTGACATTAAACTCGGCACCGTGCTACCCTACTGCGGTGTT
GTCCGCCTGGAGGGCCCGGGCGTTGACACCACGTACGCCATGGCGGCAGA
GTATCACGACGGGAGAGGCAGGAACGGGTTCGTCAGCATGCGAGGATTTC
TCGTCGATGGCAATCCCAAGCTGCTGCCGGGTCTGCGGGACAGCTGGAAG
TTTGCGGCGTACGCCAACGAGGCGACCAGGGGTCCGTGCAACGTCGTAAG
CGTCACCAACCCCGCCATCACTCACGAGGCCCTCGCGCGGTCGTTCAAGG
AGGAGAGGCCCGTCATCGTCGCCTTCTACGTGGTCGCGAGAGATATCGCC
GCCGGCGAGGAGTTGACCACCCACTACGGCAGCGGCTACCCGCGCAAGTA
CAAGTACGAGCCGCAGCCGCCGTCGCAGGCTCAACGGGATCTGGCGGAGG
ACGCCGCCGCCGCGGTCGTCCGCGACCCTCCGGGCCCCCTCTTGTTCCCA
GCCTACAGAGGGGGCACCGGAACGTGA
back to top

Coding sequence (CDS) from alignment at Contig_3:1052872..1053498+

>mRNA_378 ID=mRNA_378|Name=jgi.p|Trimin1|157306|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=627bp|location=Sequence derived from alignment at Contig_3:1052872..1053498+ (Tribonema minus UTEX_B_3156 )
ATGGGCGCGAGGGGCAGGTCGGCCCGGACTCCGAGCGGGCGGCCGGGGGT
CACGGCGCTGCTGGAGGTGAGGCCCTCGAGGGGCAAGGGGAGGGGGCTCG
TTGCCCTGCGTGACATTAAACTCGGCACCGTGCTACCCTACTGCGGTGTT
GTCCGCCTGGAGGGCCCGGGCGTTGACACCACGTACGCCATGGCGGCAGA
GTATCACGACGGGAGAGGCAGGAACGGGTTCGTCAGCATGCGAGGATTTC
TCGTCGATGGCAATCCCAAGCTGCTGCCGGGTCTGCGGGACAGCTGGAAG
TTTGCGGCGTACGCCAACGAGGCGACCAGGGGTCCGTGCAACGTCGTAAG
CGTCACCAACCCCGCCATCACTCACGAGGCCCTCGCGCGGTCGTTCAAGG
AGGAGAGGCCCGTCATCGTCGCCTTCTACGTGGTCGCGAGAGATATCGCC
GCCGGCGAGGAGTTGACCACCCACTACGGCAGCGGCTACCCGCGCAAGTA
CAAGTACGAGCCGCAGCCGCCGTCGCAGGCTCAACGGGATCTGGCGGAGG
ACGCCGCCGCCGCGGTCGTCCGCGACCCTCCGGGCCCCCTCTTGTTCCCA
GCCTACAGAGGGGGCACCGGAACGTGA
back to top