mRNA_3723 (mRNA) Tribonema minus UTEX_B_3156
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Overview
Homology
BLAST of jgi.p|Trimin1|347445 vs. uniprot
Match: A0A835ZC26_9STRA (Putative 6-phospho-3-hexuloisomerase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZC26_9STRA) HSP 1 Score: 369 bits (946), Expect = 2.590e-127 Identity = 193/193 (100.00%), Postives = 193/193 (100.00%), Query Frame = 1
Query: 1 MPDETDKYCSVLAEALKELQENVTAAQGAAVQLIEEVKGAKRICVYGVGREGLAIKGFAMRLFHMGLQHYTCASHRATPLQLPGKVSVVGEMTCSAVGAGDLLIATAGPGYFSTVAALSREARHAGARVLIITSQPPAAAAEIADVVLQVPATCLPASFELALQLWFDVACVLLVDALGLSAEAATARHTNLE 579
MPDETDKYCSVLAEALKELQENVTAAQGAAVQLIEEVKGAKRICVYGVGREGLAIKGFAMRLFHMGLQHYTCASHRATPLQLPGKVSVVGEMTCSAVGAGDLLIATAGPGYFSTVAALSREARHAGARVLIITSQPPAAAAEIADVVLQVPATCLPASFELALQLWFDVACVLLVDALGLSAEAATARHTNLE
Sbjct: 1 MPDETDKYCSVLAEALKELQENVTAAQGAAVQLIEEVKGAKRICVYGVGREGLAIKGFAMRLFHMGLQHYTCASHRATPLQLPGKVSVVGEMTCSAVGAGDLLIATAGPGYFSTVAALSREARHAGARVLIITSQPPAAAAEIADVVLQVPATCLPASFELALQLWFDVACVLLVDALGLSAEAATARHTNLE 193
BLAST of jgi.p|Trimin1|347445 vs. uniprot
Match: A0A2P6TWK2_CHLSO (Fe-S cluster assembly n=1 Tax=Chlorella sorokiniana TaxID=3076 RepID=A0A2P6TWK2_CHLSO) HSP 1 Score: 150 bits (378), Expect = 5.710e-41 Identity = 102/227 (44.93%), Postives = 124/227 (54.63%), Query Frame = 1
Query: 19 KYCSVLAEALKELQENVTAAQGAAVQLIEEVKGA----KRICVYGVGREGLAIKGFAMRLFHMGLQHYTCASHRATPLQLPGKVSVVGEMTCSAVGAGDLLIATAGPGYFSTVAALSREARHAGARVLIITSQPPAAAAEIADVVLQVPATCLPA------------------------------------SFELALQLWFDVACVLLVDALGLSAEAATARHTNLE 579
+Y +L A++ELQ NV AA+GAA L+E + A +RI VYGVGREGLA+KGFAMRL+HMGLQ SVVG+MT + +G GDLL+ +AGPG F+TV AL A AGA L +TSQP AA A VL +PATC+ A S+ELALQL+FD+ C LV L LS E ARHTNLE
Sbjct: 6 QYTQLLDAAVQELQRNVGAAEGAAAALVERLVAAAGSHRRIAVYGVGREGLAMKGFAMRLYHMGLQ-----------------ASVVGDMTAARLGPGDLLLMSAGPGIFATVQALCGVATAAGATTLALTSQPGIAARLGASQVLHIPATCMAAEEAGDEATTAVAXXXXXXXXXXXAAAAPPSPLLLGSSYELALQLFFDLVCAQLVQRLQLSPEQLAARHTNLE 215
BLAST of jgi.p|Trimin1|347445 vs. uniprot
Match: UPI0010C07FD1 (SIS domain-containing protein n=1 Tax=Rhizobium sp. FY34 TaxID=2562309 RepID=UPI0010C07FD1) HSP 1 Score: 134 bits (337), Expect = 2.990e-35 Identity = 84/173 (48.55%), Postives = 108/173 (62.43%), Query Frame = 1
Query: 100 IEEVKGAKRICVYGVGREGLAIKGFAMRLFHMGLQHYTCASHRATPLQLPGKVSVVGEMTCSAVGAGDLLIATAGPGYFSTVAALSREARHAGARVLIITSQPPAAAAEIADVVLQVPA-----------TCLPAS--FELALQLWFDVACVLLVDALGLSAEAATARHTNLE 579
+ E+ A+RI +YGVGREGL IKG AMRL+H+GLQ SVVG+MT + AGDLLI +AGPG FSTV+AL + AR AGARVL++T++P AAA +ADV+L VPA + LP +E AL + F++ + L D LG+SAE A HTNLE
Sbjct: 28 VREISEARRIALYGVGREGLQIKGLAMRLYHLGLQ-----------------ASVVGDMTTPPLDAGDLLIVSAGPGTFSTVSALMKVARMAGARVLLVTAEPQGAAAGLADVILPVPAQTMATDQGAASSVLPMGSLYEGALYILFELVILALRDELGVSAEIMRANHTNLE 183
BLAST of jgi.p|Trimin1|347445 vs. uniprot
Match: A0A1M3MM64_9HYPH (Fe-S cluster assembly protein HesB n=1 Tax=Rhizobiales bacterium 63-22 TaxID=1895812 RepID=A0A1M3MM64_9HYPH) HSP 1 Score: 129 bits (323), Expect = 3.630e-33 Identity = 87/195 (44.62%), Postives = 112/195 (57.44%), Query Frame = 1
Query: 34 LAEALKELQENVTAAQGAAVQLIEEVKGAKRICVYGVGREGLAIKGFAMRLFHMGLQHYTCASHRATPLQLPGKVSVVGEMTCSAVGAGDLLIATAGPGYFSTVAALSREARHAGARVLIITSQPPAAAAEIADVVLQVPA-----------TCLPAS--FELALQLWFDVACVLLVDALGLSAEAATARHTNLE 579
LA+ + L E+V + ++++ GA RI +YGVGREGL IKGFAMRLFH+GL K +VVG+MT +G GDLLI ++GPG FSTV AL A+ AGAR L++T+QP AA A AD VL +PA + LP FE A + F+ + L D LG+S EA A HTNLE
Sbjct: 12 LAKVFERLDEDVVQ------RAVDDIAGAGRIALYGVGREGLQIKGFAMRLFHLGL-----------------KAAVVGDMTTPPIGRGDLLILSSGPGSFSTVHALMGVAKEAGARTLVVTAQPDAADARAADTVLLLPAQTMANDRGESASILPMGSLFEGAQYILFEGMILKLRDKLGISTEAMRANHTNLE 183
BLAST of jgi.p|Trimin1|347445 vs. uniprot
Match: A0A2W4PML5_9PROT (6-phospho-3-hexuloisomerase n=2 Tax=Proteobacteria TaxID=1224 RepID=A0A2W4PML5_9PROT) HSP 1 Score: 127 bits (318), Expect = 2.010e-32 Identity = 81/173 (46.82%), Postives = 102/173 (58.96%), Query Frame = 1
Query: 100 IEEVKGAKRICVYGVGREGLAIKGFAMRLFHMGLQHYTCASHRATPLQLPGKVSVVGEMTCSAVGAGDLLIATAGPGYFSTVAALSREARHAGARVLIITSQPPAAAAEIADVVLQVPA-----------TCLPAS--FELALQLWFDVACVLLVDALGLSAEAATARHTNLE 579
+E + A+RI +YGVGREGL IKGFAMRLFH+G Q +VVG+MT +G GDLLI +AGPG FSTV AL EA+ AGA L++T+QP AA AD+VL +PA + LP +E A + F+V + L D LG+S EA A HTNLE
Sbjct: 28 VERIAAARRIALYGVGREGLQIKGFAMRLFHLGRQ-----------------AAVVGDMTTPPIGPGDLLIVSAGPGAFSTVLALMGEAKKAGASCLVVTAQPGGEAARQADMVLTIPAQTMADDRGPTTSVLPMGSLYEGAQYILFEVMILKLRDRLGISPEAMRANHTNLE 183
BLAST of jgi.p|Trimin1|347445 vs. uniprot
Match: A0A5B2W085_9HYPH (SIS domain-containing protein n=1 Tax=Salinarimonas soli TaxID=1638099 RepID=A0A5B2W085_9HYPH) HSP 1 Score: 127 bits (318), Expect = 2.010e-32 Identity = 81/179 (45.25%), Postives = 104/179 (58.10%), Query Frame = 1
Query: 82 GAAVQLIEEVKGAKRICVYGVGREGLAIKGFAMRLFHMGLQHYTCASHRATPLQLPGKVSVVGEMTCSAVGAGDLLIATAGPGYFSTVAALSREARHAGARVLIITSQPPAAAAEIADVVLQVPA-----------TCLPAS--FELALQLWFDVACVLLVDALGLSAEAATARHTNLE 579
GA + + E+ A+RI +YGVGREGL +KGF MRLFH+G ++VG+MT AVG GDLL+ +AGPG FSTV AL AR AGAR L++T+QP AA +AD VL VPA + LP +E A + F++ + L D LG+S EA A HTNLE
Sbjct: 22 GAVDRAVAEIAAARRIALYGVGREGLQMKGFCMRLFHLGRS-----------------AAMVGDMTTPAVGPGDLLVVSAGPGAFSTVLALMGVAREAGARTLVVTAQPGGEAARLADAVLPVPAQTMADDRGGAVSVLPMGSLYEGAQYVLFEIMILKLRDRLGVSPEAMRANHTNLE 183
BLAST of jgi.p|Trimin1|347445 vs. uniprot
Match: UPI000B4A563F (SIS domain-containing protein n=1 Tax=Rhodomicrobium TaxID=1068 RepID=UPI000B4A563F) HSP 1 Score: 127 bits (318), Expect = 2.010e-32 Identity = 80/173 (46.24%), Postives = 102/173 (58.96%), Query Frame = 1
Query: 100 IEEVKGAKRICVYGVGREGLAIKGFAMRLFHMGLQHYTCASHRATPLQLPGKVSVVGEMTCSAVGAGDLLIATAGPGYFSTVAALSREARHAGARVLIITSQPPAAAAEIADVVLQVPA-----------TCLPAS--FELALQLWFDVACVLLVDALGLSAEAATARHTNLE 579
+ E+ A RI +YGVGREGL IKG AMRLFH+GL K ++VG+MT +G GDLLI +AGPGYFSTV AL A GAR L++T+QP A A+ ADVVL +PA + LP +E A + F+V ++L D LG++ EA A HTNLE
Sbjct: 28 VAEIAAANRIALYGVGREGLQIKGLAMRLFHLGL-----------------KAAMVGDMTTPHLGTGDLLIVSAGPGYFSTVDALMGVAARDGARTLLVTAQPDGACAKAADVVLPIPAQTMADDGGATVSVLPMGSLYEGAQYILFEVMILMLRDRLGITPEAMRANHTNLE 183
BLAST of jgi.p|Trimin1|347445 vs. uniprot
Match: UPI000DE9A305 (SIS domain-containing protein n=1 Tax=Cohaesibacter intestini TaxID=2211145 RepID=UPI000DE9A305) HSP 1 Score: 127 bits (318), Expect = 2.010e-32 Identity = 80/175 (45.71%), Postives = 100/175 (57.14%), Query Frame = 1
Query: 94 QLIEEVKGAKRICVYGVGREGLAIKGFAMRLFHMGLQHYTCASHRATPLQLPGKVSVVGEMTCSAVGAGDLLIATAGPGYFSTVAALSREARHAGARVLIITSQPPAAAAEIADVVLQVPATCLPASFEL-------------ALQLWFDVACVLLVDALGLSAEAATARHTNLE 579
+ +E V+ A RI +YGVGREGL IKGFAMRLFH+GL KVSVVG+MT +G GDLLIA+AGPGYFSTVAAL A+ AGA+ L IT+QP A+ AD VL +PA + E+ A + F+ + L L +SA+ HTNLE
Sbjct: 26 EFVETVRSANRIALYGVGREGLQIKGFAMRLFHLGL-----------------KVSVVGDMTTPPLGTGDLLIASAGPGYFSTVAALINTAKQAGAKTLCITAQPDGVCAQTADQVLVIPAQTMADDMEVKTSTLPMGSLYEGAQYVVFECLLLKLKQILAISADDMRNNHTNLE 183
BLAST of jgi.p|Trimin1|347445 vs. uniprot
Match: A0A0K2DA34_9HYPH (Fe-S cluster assembly protein HesB n=3 Tax=Chelatococcus TaxID=28209 RepID=A0A0K2DA34_9HYPH) HSP 1 Score: 126 bits (317), Expect = 2.830e-32 Identity = 84/173 (48.55%), Postives = 104/173 (60.12%), Query Frame = 1
Query: 100 IEEVKGAKRICVYGVGREGLAIKGFAMRLFHMGLQHYTCASHRATPLQLPGKVSVVGEMTCSAVGAGDLLIATAGPGYFSTVAALSREARHAGARVLIITSQPPAAAAEIADVVLQVPATCL-----PAS--------FELALQLWFDVACVLLVDALGLSAEAATARHTNLE 579
+E + A+RI +YGVGREGL IKGFAMRLFH+G RA +VVG+MT + GDLLI +AGPG FSTV AL EAR AGA L++T+QP AA+ AD VL +PA + PAS +E A + F+V + L D LG+SAEA A HTNLE
Sbjct: 28 VERIAAARRIALYGVGREGLQIKGFAMRLFHLG---------RAA--------AVVGDMTTPPLAEGDLLIVSAGPGAFSTVLALMGEARKAGAACLLVTAQPGGEAAKQADTVLAIPAQTMADDRGPASSVLPMGSLYEGAQYILFEVMILKLKDKLGVSAEAMRANHTNLE 183
BLAST of jgi.p|Trimin1|347445 vs. uniprot
Match: UPI00062B3035 (SIS domain-containing protein n=1 Tax=Microvirga massiliensis TaxID=1033741 RepID=UPI00062B3035) HSP 1 Score: 125 bits (315), Expect = 5.600e-32 Identity = 79/173 (45.66%), Postives = 103/173 (59.54%), Query Frame = 1
Query: 100 IEEVKGAKRICVYGVGREGLAIKGFAMRLFHMGLQHYTCASHRATPLQLPGKVSVVGEMTCSAVGAGDLLIATAGPGYFSTVAALSREARHAGARVLIITSQPPAAAAEIADVVLQVPA-----------TCLPAS--FELALQLWFDVACVLLVDALGLSAEAATARHTNLE 579
++E+ A ++ +YGVGREGL +KGFAMRLFH+G K SVVG+MT +G GDLLI +AGPG+FSTV AL A+ AGAR L++T+QP A A ADVVL VPA + LP FE A + F+V ++L LG++ EA + HTNLE
Sbjct: 28 VDEIAKADKVALYGVGREGLQVKGFAMRLFHLGR-----------------KASVVGDMTTPHLGRGDLLIVSAGPGHFSTVEALMGVAKRAGARTLVVTAQPDGACARAADVVLPVPAQTMADDSGSSVSVLPMGSLFEGAQYVLFEVMILMLRGRLGVTPEAMRSNHTNLE 183 The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|347445 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following exon feature(s) are a part of this mRNA:
The following three_prime_UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
spliced messenger RNA >mRNA_3723 ID=mRNA_3723|Name=jgi.p|Trimin1|347445|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=845bp|location=Sequence derived from alignment at Contig_12:392621..394444- (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon. ATGCCAGACGAGACAGACAAGTACTGCTCCGTGCTGGCAGAAGCGCTGAAback to top protein sequence of jgi.p|Trimin1|347445 >Trimin1|347445|estExt_Genemark1.C_Ctg_120052 ID=Trimin1|347445|estExt_Genemark1.C_Ctg_120052|Name=jgi.p|Trimin1|347445|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=194bp MPDETDKYCSVLAEALKELQENVTAAQGAAVQLIEEVKGAKRICVYGVGRback to top mRNA from alignment at Contig_12:392621..394444- Legend: polypeptideexonCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_3723 ID=mRNA_3723|Name=jgi.p|Trimin1|347445|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=1824bp|location=Sequence derived from alignment at Contig_12:392621..394444- (Tribonema minus UTEX_B_3156 )back to top Coding sequence (CDS) from alignment at Contig_12:392621..394444- >mRNA_3723 ID=mRNA_3723|Name=jgi.p|Trimin1|347445|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=582bp|location=Sequence derived from alignment at Contig_12:392621..394444- (Tribonema minus UTEX_B_3156 )back to top |