mRNA_3722 (mRNA) Tribonema minus UTEX_B_3156
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Overview
Homology
BLAST of jgi.p|Trimin1|347444 vs. uniprot
Match: A0A835ZGQ5_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZGQ5_9STRA) HSP 1 Score: 504 bits (1298), Expect = 2.520e-178 Identity = 284/284 (100.00%), Postives = 284/284 (100.00%), Query Frame = 3
Query: 198 MHVKAGVAAALSSLLLARHAEGFQLPTLHRQQPRHSTRSGSMPHMGLQAPLGGITIAAGAEIILAAYSGHLPCAAARATSKGVAAGAASLALSLFFKEFVDTGAGGVAVGAANFLTIVMLLVRVVTIRPDARYVHFPASMRRCASFXXXXXXXXXXXXXXXXXXXXXIAHPSGCTRVAPTKTNVSDLGMPKFKSSPAEVQEVAREWLALQPRTKIFRDEPGYVHAQALSFLFGFPDNLGIRFEETPGGGTQVWAQGELRVGEGDLGVNYKRVKALLLYLQANCT 1049
MHVKAGVAAALSSLLLARHAEGFQLPTLHRQQPRHSTRSGSMPHMGLQAPLGGITIAAGAEIILAAYSGHLPCAAARATSKGVAAGAASLALSLFFKEFVDTGAGGVAVGAANFLTIVMLLVRVVTIRPDARYVHFPASMRRCASFXXXXXXXXXXXXXXXXXXXXXIAHPSGCTRVAPTKTNVSDLGMPKFKSSPAEVQEVAREWLALQPRTKIFRDEPGYVHAQALSFLFGFPDNLGIRFEETPGGGTQVWAQGELRVGEGDLGVNYKRVKALLLYLQANCT
Sbjct: 1 MHVKAGVAAALSSLLLARHAEGFQLPTLHRQQPRHSTRSGSMPHMGLQAPLGGITIAAGAEIILAAYSGHLPCAAARATSKGVAAGAASLALSLFFKEFVDTGAGGVAVGAANFLTIVMLLVRVVTIRPDARYVHFPASMRRCASFXXXXXXXXXXXXXXXXXXXXXIAHPSGCTRVAPTKTNVSDLGMPKFKSSPAEVQEVAREWLALQPRTKIFRDEPGYVHAQALSFLFGFPDNLGIRFEETPGGGTQVWAQGELRVGEGDLGVNYKRVKALLLYLQANCT 284
BLAST of jgi.p|Trimin1|347444 vs. uniprot
Match: A0A6V1NVD6_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A6V1NVD6_HETAK) HSP 1 Score: 118 bits (295), Expect = 2.980e-27 Identity = 92/241 (38.17%), Postives = 114/241 (47.30%), Query Frame = 3
Query: 357 ITIAAGAEIILAAYSGHLPCAAARATSKGVAAGAASLALSLFFKEFVDTG----AGGVAVGAANFLTIVMLL-VRVVTIRPDARYVH-FPASMRRCASFXXXXXXXXXXXXXXXXXXXXXIAHPSGCTRVA------PTKTNVSDLGMPKFKSSPAEVQEVAREWLALQPRTKIFRDEPGYVHAQALSFLFGFPDNLGIRFEETPGGGTQVWAQGELRVGEGDLGVNYKRVKALLLYLQAN 1043
+ IA+ E LA +GH P GV G SLA S K AVG + +V LL VR+ T+ PD RY FPA +A P GCTRVA P N+ +P S +VQ+ + W+ QPR I ++ GY+HAQ LS L GFPDNLG+R G T+VWAQGELRVG+GDLGVNY RVK LL ++ N
Sbjct: 73 VPIASALEAGLAVVAGHAP---------GVVVGLVSLAWSTVLKNKDAVRRLLPVSPEAVGTPLSVWVVALLGVRLATLAPDPRYAGAFPAD----------------------------VAAPIGCTRVAGDFGRWPGGGNLRPAVVPGL--SVDQVQQRIKGWILEQPRATILEEKEGYIHAQVLSNLMGFPDNLGVRVFRNAAGRTEVWAQGELRVGQGDLGVNYARVKKLLEFIDEN 274
BLAST of jgi.p|Trimin1|347444 vs. uniprot
Match: A0A3M1U0C2_9EURY (DUF1499 domain-containing protein n=1 Tax=Euryarchaeota archaeon TaxID=2026739 RepID=A0A3M1U0C2_9EURY) HSP 1 Score: 79.7 bits (195), Expect = 2.770e-14 Identity = 41/108 (37.96%), Postives = 63/108 (58.33%), Query Frame = 3
Query: 717 CTRVAPTKTNVSDLGMPKFKSSPAEVQEVAREWLALQPRTKIFRDEPGYVHAQALSFLFGFPDNLGIRFEETPGGGTQVWAQGELRVGEGDLGVNYKRVKALLLYLQA 1040
CTRVA L K ++ EV + W+ +QPRT+I RD ++HA+ LSF+F FPD+L ++ G T W Q + R+G GDL VN +RV++L ++++
Sbjct: 46 CTRVAEFNVRGEGLRPLKLNATLREVHDAILNWIDVQPRTEILRDNGTFIHAKFLSFVFRFPDDLYVQLF-CVGNQTSFWVQSQSRLGRGDLNVNEERVQSLFSFIES 152
BLAST of jgi.p|Trimin1|347444 vs. uniprot
Match: A0A0D2M186_9CHLO (Uncharacterized protein n=1 Tax=Monoraphidium neglectum TaxID=145388 RepID=A0A0D2M186_9CHLO) HSP 1 Score: 59.7 bits (143), Expect = 4.530e-7 Identity = 53/182 (29.12%), Postives = 76/182 (41.76%), Query Frame = 3
Query: 528 AANFLTIVMLLVRVVTIRPDARYVHFPASMRRCASFXXXXXXXXXXXXXXXXXXXXXIAHPSGCTRVAPTKTNVSDLGMP-KFKSSPAEVQEVAREWLALQPRTKIFRDEPG----------YVHAQALSFLFGFPDNLGIRFEETPGGGTQVWAQGELRVGEGDLGVNYKRVKALLLYLQA 1040
A L +++LLVR + P A FP RC GC RVA + + +P K +++ + A W+ PR ++ D VHA+ L+F +GF D+ +R G V AQG+LR+G GDLGVN R +ALL L+A
Sbjct: 6 ALGALVMLLLLVRAASPDPKATAAAFP---ERCTKL-------------------------EGCGRVAERHPHRAGPEVPLKLRTTLEGARGAAAAWVRALPRAEVLYDAADGGADGGGRALLVHARVLTFFWGFADDFWVRLSCAGDGAALVEAQGQLRLGVGDLGVNPARNQALLGALRA 159 The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|347444 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 4
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following exon feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following five_prime_UTR feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
spliced messenger RNA >mRNA_3722 ID=mRNA_3722|Name=jgi.p|Trimin1|347444|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=1052bp|location=Sequence derived from alignment at Contig_12:388539..392383- (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon. GCCCTTTATATCATATAAAAAAGCACATGATGGGTGAATGCAGGCTCTTGback to top protein sequence of jgi.p|Trimin1|347444 >Trimin1|347444|estExt_Genemark1.C_Ctg_120051 ID=Trimin1|347444|estExt_Genemark1.C_Ctg_120051|Name=jgi.p|Trimin1|347444|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=285bp MHVKAGVAAALSSLLLARHAEGFQLPTLHRQQPRHSTRSGSMPHMGLQAPback to top mRNA from alignment at Contig_12:388539..392383- Legend: exonfive_prime_UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_3722 ID=mRNA_3722|Name=jgi.p|Trimin1|347444|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=3845bp|location=Sequence derived from alignment at Contig_12:388539..392383- (Tribonema minus UTEX_B_3156 )back to top Coding sequence (CDS) from alignment at Contig_12:388539..392383- >mRNA_3722 ID=mRNA_3722|Name=jgi.p|Trimin1|347444|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=855bp|location=Sequence derived from alignment at Contig_12:388539..392383- (Tribonema minus UTEX_B_3156 )back to top |