mRNA_3677 (mRNA) Tribonema minus UTEX_B_3156
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Overview
Homology
BLAST of jgi.p|Trimin1|347420 vs. uniprot
Match: A0A836CMQ2_9STRA (Alpha/Beta hydrolase protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CMQ2_9STRA) HSP 1 Score: 785 bits (2028), Expect = 2.950e-278 Identity = 531/531 (100.00%), Postives = 531/531 (100.00%), Query Frame = 2
Query: 17 MANEAAAIAAGESASEAQQQQQQLGLPAVNAGDTSAAKEDHLKAQLEELLKFYTAPSEGAWPQSSFMRVRGVLVHYKDTDPGGLHTRGQPCFVLLHGFAGSTASFDEVFGELSRHGRVVAFDRPAFGLTERVMPQEGVPWQLSARTLGENPYTAKFAAKLMFGILDRLGVDECVLVSHSLGAQVALRAIQLRPQAVRAAVLTAPAVLNPLDARFSMGRDNGGSIFSPIANLRTRLSVAAQGLXXXXXXXXXXXXXXXXQAPNVXXXXXXXXXXXXXXXXXASAAGLALMTSPTDVAVDMVRNVTLSEDLESRVRRNFHDPALVREKPELVGKYVTPLREDGWDRGLLEFYRAQASEAAPGSRLLEEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVRAAWKGPVLVXXXXXXXXXXXXXXXXXXXVIAGETDPVXXXXXXXXXXXXXXXXXTVPLSACQFVAERFDARLRVIEQCAHIPMDEVPEAWTRAVVSFVDSKDVLARGRPPLPWRQRRLLRKQGS 1609
MANEAAAIAAGESASEAQQQQQQLGLPAVNAGDTSAAKEDHLKAQLEELLKFYTAPSEGAWPQSSFMRVRGVLVHYKDTDPGGLHTRGQPCFVLLHGFAGSTASFDEVFGELSRHGRVVAFDRPAFGLTERVMPQEGVPWQLSARTLGENPYTAKFAAKLMFGILDRLGVDECVLVSHSLGAQVALRAIQLRPQAVRAAVLTAPAVLNPLDARFSMGRDNGGSIFSPIANLRTRLSVAAQGLXXXXXXXXXXXXXXXXQAPNVXXXXXXXXXXXXXXXXXASAAGLALMTSPTDVAVDMVRNVTLSEDLESRVRRNFHDPALVREKPELVGKYVTPLREDGWDRGLLEFYRAQASEAAPGSRLLEEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVRAAWKGPVLVXXXXXXXXXXXXXXXXXXXVIAGETDPVXXXXXXXXXXXXXXXXXTVPLSACQFVAERFDARLRVIEQCAHIPMDEVPEAWTRAVVSFVDSKDVLARGRPPLPWRQRRLLRKQGS
Sbjct: 1 MANEAAAIAAGESASEAQQQQQQLGLPAVNAGDTSAAKEDHLKAQLEELLKFYTAPSEGAWPQSSFMRVRGVLVHYKDTDPGGLHTRGQPCFVLLHGFAGSTASFDEVFGELSRHGRVVAFDRPAFGLTERVMPQEGVPWQLSARTLGENPYTAKFAAKLMFGILDRLGVDECVLVSHSLGAQVALRAIQLRPQAVRAAVLTAPAVLNPLDARFSMGRDNGGSIFSPIANLRTRLSVAAQGLXXXXXXXXXXXXXXXXQAPNVXXXXXXXXXXXXXXXXXASAAGLALMTSPTDVAVDMVRNVTLSEDLESRVRRNFHDPALVREKPELVGKYVTPLREDGWDRGLLEFYRAQASEAAPGSRLLEEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVRAAWKGPVLVXXXXXXXXXXXXXXXXXXXVIAGETDPVXXXXXXXXXXXXXXXXXTVPLSACQFVAERFDARLRVIEQCAHIPMDEVPEAWTRAVVSFVDSKDVLARGRPPLPWRQRRLLRKQGS 531
BLAST of jgi.p|Trimin1|347420 vs. uniprot
Match: D7FNS2_ECTSI (AB hydrolase-1 domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FNS2_ECTSI) HSP 1 Score: 239 bits (610), Expect = 1.710e-66 Identity = 138/327 (42.20%), Postives = 190/327 (58.10%), Query Frame = 2
Query: 140 LKAQLEELLKFYT--APSEGAWPQSSFMRVRGVLVHYKDTDPGGLHTRGQPCFVLLHGFAGSTASFDEVFGELSRHGRVVAFDRPAFGLTERVMPQEG-VPWQLSARTLGENPYTAKFAAKLMFGILDRLGVDECVLVSHSLGAQVALRAIQLRPQAVRAAVLTAPAVLNPLDARFSMGRDNGGSIFSPIANLRTRLSVAAQGLXXXXXXXXXXXXXXXXQAPNVXXXXXXXXXXXXXXXXXASAAGLALMTSPTDVAVDMVRNVTLSEDLESRVRRNFHDPALVREKPELVGKYVTPLREDGWDRGLLEFYRAQASEAAPGSRLLE 1111
+ A +++LL+ Y AP E WP +RVRGV + YK V G+LS +GRV++FDRP FG TERVMP G +PW+L ++T+GENPY+A FAAK++FG+LDRLGVD+ ++V+HSLGAQVALRA + RP +RA VL APAVLNPLD++F MGRD ++FS I NLRTR+ + A+ +A L L+ P + + VRN+TL+ D+E RV++NFHD ++ +PELV KY+ PLR+ WDRGL+ FY++ E PG +LL+
Sbjct: 200 VNALVKKLLEEYCSKAPLEEQWPPGRRIRVRGVEIFYK------------------------------VVGDLSEYGRVISFDRPGFGRTERVMPPAGGLPWRLCSKTMGENPYSADFAAKVLFGVLDRLGVDKVIVVAHSLGAQVALRAARSRPGMIRAMVLVAPAVLNPLDSKFVMGRDPNANLFSAILNLRTRVEMTAK----------------------------------------LAAFNLQLL-QPGEGPLHAVRNMTLNGDVEERVQQNFHDRSITLGRPELVAKYIEPLRDPLWDRGLVHFYKSLQGEVQPGEQLLQ 455
BLAST of jgi.p|Trimin1|347420 vs. uniprot
Match: A0A7S3UU90_HETAK (Hypothetical protein (Fragment) n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3UU90_HETAK) HSP 1 Score: 115 bits (289), Expect = 3.830e-26 Identity = 63/127 (49.61%), Postives = 78/127 (61.42%), Query Frame = 2
Query: 203 QSSFMRVRGVLVHYKDTDPGGLHTRGQPCFVLLHGFAGSTASFDEVFGELSRHG-RVVAFDRPAFGLTERVMPQEGVPWQLSARTLGENPYTAKFAAKLMFGILDRLGVDECVLVSHSLGAQVALRA 580
+S + ++GV HYKDT P VLLHGFAGSTA +D +G L+ G RVVAFDRPAFGLT R +PW + TL ++PY F+ ++ +LDRL V VLV HSLG QVALRA
Sbjct: 51 ESKYTTIQGVQFHYKDTGPPPGRRGRYRTVVLLHGFAGSTACWDAAWGGLAAAGARVVAFDRPAFGLTSRPTAPLNLPWSANPETLFQDPYGVDFSVAALWRLLDRLRVPRAVLVGHSLGCQVALRA 177
BLAST of jgi.p|Trimin1|347420 vs. uniprot
Match: A0A3M1DRE7_9CHLR (Alpha/beta hydrolase (Fragment) n=1 Tax=Thermoflexia bacterium TaxID=2420334 RepID=A0A3M1DRE7_9CHLR) HSP 1 Score: 115 bits (287), Expect = 2.820e-25 Identity = 69/151 (45.70%), Postives = 85/151 (56.29%), Query Frame = 2
Query: 182 PSEGAWPQSSFMRVRGVLVHYKDTDPGGLHTRGQPCFVLLHGFAGSTASFDEVFGELSRHGRVVAFDRPAFGLTERVMPQEGVPWQLSARTLGENPYTAKFAAKLMFGILDRLGVDECVLVSHSLGAQVALRAIQLRPQAVRAAVLTAPAV 634
P + A P S F+ V G+ VHYK G +P F+LLHGFA ST S+ EV +S G VVAFDRP FGLTER MP E W G +PY+ + A L G++D LG+ VLV +S G VAL P+ V A VL +PAV
Sbjct: 37 PEQLADPDSRFVEVNGIAVHYKTAGSG------RPAFLLLHGFAASTFSWREVMEPMSEWGTVVAFDRPGFGLTERPMPGE---WT------GRSPYSPEAQADLTVGLMDALGIKRAVLVGNSAGGAVALLTALTYPERVEALVLVSPAV 172
BLAST of jgi.p|Trimin1|347420 vs. uniprot
Match: A0A3M1EXU4_9CHLR (Alpha/beta fold hydrolase (Fragment) n=1 Tax=Caldilineae bacterium TaxID=2420332 RepID=A0A3M1EXU4_9CHLR) HSP 1 Score: 113 bits (282), Expect = 8.530e-25 Identity = 65/151 (43.05%), Postives = 90/151 (59.60%), Query Frame = 2
Query: 182 PSEGAWPQSSFMRVRGVLVHYKDTDPGGLHTRGQPCFVLLHGFAGSTASFDEVFGELSRHGRVVAFDRPAFGLTERVMPQEGVPWQLSARTLGENPYTAKFAAKLMFGILDRLGVDECVLVSHSLGAQVALRAIQLRPQAVRAAVLTAPAV 634
P + A P S F+RV+GV +HYK + +G+P FVLLHGF S S+ +V EL+R G V+A+DRPAFGL+ER + EG +NPY+ + +FG++D LGV + +LV +S G VALRA RP V+A + AV
Sbjct: 37 PRQLADPDSRFIRVQGVDLHYK------MAGQGEPVFVLLHGFGASLFSWHKVMPELARLGAVIAYDRPAFGLSERPLQWEG-----------QNPYSPEAQVDQLFGLMDALGVQQAILVGNSAGGTVALRAALARPDRVQAIIAVDAAV 170
BLAST of jgi.p|Trimin1|347420 vs. uniprot
Match: A0A0S7BK97_9CHLR (Predicted hydrolase n=1 Tax=Longilinea arvoryzae TaxID=360412 RepID=A0A0S7BK97_9CHLR) HSP 1 Score: 115 bits (288), Expect = 1.900e-24 Identity = 62/154 (40.26%), Postives = 87/154 (56.49%), Query Frame = 2
Query: 173 YTAPSEGAWPQSSFMRVRGVLVHYKDTDPGGLHTRGQPCFVLLHGFAGSTASFDEVFGELSRHGRVVAFDRPAFGLTERVMPQEGVPWQLSARTLGENPYTAKFAAKLMFGILDRLGVDECVLVSHSLGAQVALRAIQLRPQAVRAAVLTAPAV 634
Y E A P S F+ + G+ VHYK G +P +LLHGF S S+ EV L++H V+A+DRP FGLT+R+MP E W+ ENPY+A+ ++ G++D LG+++ +L+ HS G VAL + Q PQ VL PAV
Sbjct: 36 YAHEMELAEPDSRFIEIDGIRVHYKRIGAG------EPVIILLHGFGASVFSWREVMAPLAKHATVLAYDRPGFGLTQRLMPGE---WKC------ENPYSAQAQVAILIGLMDELGIEKAILIGHSAGGTVALASAQAHPQRFSGLVLVDPAV 174
BLAST of jgi.p|Trimin1|347420 vs. uniprot
Match: A0A3N5QWG1_9CHLR (Alpha/beta hydrolase n=1 Tax=Chloroflexi bacterium TaxID=2026724 RepID=A0A3N5QWG1_9CHLR) HSP 1 Score: 114 bits (284), Expect = 5.270e-24 Identity = 69/157 (43.95%), Postives = 91/157 (57.96%), Query Frame = 2
Query: 164 LKFYTAPSEGAWPQSSFMRVRGVLVHYKDTDPGGLHTRGQPCFVLLHGFAGSTASFDEVFGELSRHGRVVAFDRPAFGLTERVMPQEGVPWQLSARTLGENPYTAKFAAKLMFGILDRLGVDECVLVSHSLGAQVALRAIQLRPQAVRAAVLTAPAV 634
LK P E A S F+ V G+ VHYK++ GG P +LLHGF S S+ EV LS + RVVAFDRPAFGLTER P E W++ ENPY+ +L+ G++D+LG+D+ VLV +S G V++ PQ V+A +L PAV
Sbjct: 31 LKDTVPPEELADSDSKFVEVNGLNVHYKESGDGG------PAIILLHGFLASIFSWREVMEPLSEYSRVVAFDRPAFGLTER--PLE---WEV------ENPYSRDSQVELVIGLMDQLGIDQAVLVGNSAGGTVSMSTALKYPQRVKALILVDPAV 170
BLAST of jgi.p|Trimin1|347420 vs. uniprot
Match: A0A3B9A239_9CHLR (Alpha/beta hydrolase (Fragment) n=1 Tax=Anaerolineaceae bacterium TaxID=2024896 RepID=A0A3B9A239_9CHLR) HSP 1 Score: 111 bits (278), Expect = 8.920e-24 Identity = 66/156 (42.31%), Postives = 88/156 (56.41%), Query Frame = 2
Query: 206 SSFMRVRGVLVHYKDTDPGGLHTRGQPCFVLLHGFAGSTASFDEVFGELSRHGRVVAFDRPAFGLTERVMPQEGVPWQLSARTLGENPYTAKFAAKLMFGILDRLGVDECVLVSHSLGAQVALRAIQLRPQAVRAAVLT---------APAVLNPL 646
S F+ V G+ VHYK + G+P +LLHGF ST S+ EV L+ G V+AFDRPAFGLTER MP + W+ GE+PYT +L+ G++DRLG++ VL+ +S G VA+ A P+ V A VL APA + PL
Sbjct: 44 SRFVEVNGIDVHYKQ------YGSGEPVMILLHGFGASTFSWREVMKPLAETGTVMAFDRPAFGLTERPMPGD---WE------GESPYTLNSQVRLLIGLMDRLGIERAVLIGNSAGGTVAMAAALAHPERVSALVLVDAAIYAGGGAPAWIRPL 184
BLAST of jgi.p|Trimin1|347420 vs. uniprot
Match: A0A0P6X3A2_9CHLR (AB hydrolase-1 domain-containing protein n=1 Tax=Bellilinea caldifistulae TaxID=360411 RepID=A0A0P6X3A2_9CHLR) HSP 1 Score: 111 bits (277), Expect = 4.540e-23 Identity = 66/156 (42.31%), Postives = 89/156 (57.05%), Query Frame = 2
Query: 206 SSFMRVRGVLVHYKDTDPGGLHTRGQPCFVLLHGFAGSTASFDEVFGELSRHGRVVAFDRPAFGLTERVMPQEGVPWQLSARTLGENPYTAKFAAKLMFGILDRLGVDECVLVSHSLGAQVALRAIQLRPQAVRAAVLT---------APAVLNPL 646
S F+ V+G+ VHYK + G+P +LLHGF ST S+ EV L+++G V+AFDRPAFGLTER MP E W GE+PYT +L+ G++D+LG++ VL+ +S G VA A P+ V A VL APA + PL
Sbjct: 44 SRFVEVKGIDVHYKQ------YGSGEPVMILLHGFGASTFSWREVMQPLAQYGTVIAFDRPAFGLTERPMPGE---WS------GESPYTLNSQIQLLMGLMDQLGIERAVLIGNSAGGTVAAAAALAYPERVSALVLVDAAIYAGGGAPAWIRPL 184
BLAST of jgi.p|Trimin1|347420 vs. uniprot
Match: A0A523BC97_9ARCH (Alpha/beta hydrolase n=1 Tax=Candidatus Verstraetearchaeota archaeon TaxID=2250257 RepID=A0A523BC97_9ARCH) HSP 1 Score: 111 bits (277), Expect = 4.890e-23 Identity = 62/143 (43.36%), Postives = 82/143 (57.34%), Query Frame = 2
Query: 206 SSFMRVRGVLVHYKDTDPGGLHTRGQPCFVLLHGFAGSTASFDEVFGELSRHGRVVAFDRPAFGLTERVMPQEGVPWQLSARTLGENPYTAKFAAKLMFGILDRLGVDECVLVSHSLGAQVALRAIQLRPQAVRAAVLTAPAV 634
S FM V G+ VHYK ++ G+P VLLHGF + SF+ V ELSRHG V+ FDRPAFG TER + + W G NPY+++FAA L G++D LG+ VL+ HS G +AL + P+ V A + AV
Sbjct: 45 SKFMVVNGLKVHYK------IYGSGEPAIVLLHGFGAYSFSFEPVIEELSRHGTVIVFDRPAFGFTERPLLEN---WD------GPNPYSSEFAADLTVGLMDGLGIHRAVLLGHSAGGAIALLSYYRHPERVEALIFEDAAV 172 The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|347420 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
This mRNA is a part of the following gene feature(s):
The following exon feature(s) are a part of this mRNA:
The following three_prime_UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following five_prime_UTR feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
spliced messenger RNA >mRNA_3677 ID=mRNA_3677|Name=jgi.p|Trimin1|347420|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=2178bp|location=Sequence derived from alignment at Contig_12:197..7495- (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon. ACAAGATCTGGCAGCCATGGCAAACGAAGCCGCTGCGATAGCGGCAGGAGback to top protein sequence of jgi.p|Trimin1|347420 >Trimin1|347420|estExt_Genemark1.C_Ctg_120001 ID=Trimin1|347420|estExt_Genemark1.C_Ctg_120001|Name=jgi.p|Trimin1|347420|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=594bp MANEAAAIAAGESASEAQQQQQQLGLPAVNAGDTSAAKEDHLKAQLEELLback to top mRNA from alignment at Contig_12:197..7495- Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_3677 ID=mRNA_3677|Name=jgi.p|Trimin1|347420|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=7299bp|location=Sequence derived from alignment at Contig_12:197..7495- (Tribonema minus UTEX_B_3156 )back to top Coding sequence (CDS) from alignment at Contig_12:197..7495- >mRNA_3677 ID=mRNA_3677|Name=jgi.p|Trimin1|347420|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=1782bp|location=Sequence derived from alignment at Contig_12:197..7495- (Tribonema minus UTEX_B_3156 )back to top |