mRNA_3665 (mRNA) Tribonema minus UTEX_B_3156
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Overview
Homology
BLAST of jgi.p|Trimin1|159396 vs. uniprot
Match: A0A835YR97_9STRA (Hint domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YR97_9STRA) HSP 1 Score: 441 bits (1135), Expect = 1.080e-156 Identity = 221/221 (100.00%), Postives = 221/221 (100.00%), Query Frame = 1
Query: 1 YEPIYEWGHGDADTLAPFVALKLEGGARLELMPDRFVPTAPANAPGGTPLLKRARDVARGDAVWVFDAMMSTEPTPRAVLDSTLAVKRGLWNPYTLSGTIVANGVVASSHSAWFADGAFDSLSLPFSALPGIYQAALATVRALRALLGAARYNALYDKIDARLVLTHFAAGNLGAVGDVVGAARGVRRGAGTGGWRCGYCLRHVLPAAYCGGAGSGVCVPQ 663
YEPIYEWGHGDADTLAPFVALKLEGGARLELMPDRFVPTAPANAPGGTPLLKRARDVARGDAVWVFDAMMSTEPTPRAVLDSTLAVKRGLWNPYTLSGTIVANGVVASSHSAWFADGAFDSLSLPFSALPGIYQAALATVRALRALLGAARYNALYDKIDARLVLTHFAAGNLGAVGDVVGAARGVRRGAGTGGWRCGYCLRHVLPAAYCGGAGSGVCVPQ
Sbjct: 1 YEPIYEWGHGDADTLAPFVALKLEGGARLELMPDRFVPTAPANAPGGTPLLKRARDVARGDAVWVFDAMMSTEPTPRAVLDSTLAVKRGLWNPYTLSGTIVANGVVASSHSAWFADGAFDSLSLPFSALPGIYQAALATVRALRALLGAARYNALYDKIDARLVLTHFAAGNLGAVGDVVGAARGVRRGAGTGGWRCGYCLRHVLPAAYCGGAGSGVCVPQ 221
BLAST of jgi.p|Trimin1|159396 vs. uniprot
Match: D8RTU1_SELML (HintN domain-containing protein n=4 Tax=Selaginella moellendorffii TaxID=88036 RepID=D8RTU1_SELML) HSP 1 Score: 111 bits (278), Expect = 5.840e-25 Identity = 76/186 (40.86%), Postives = 94/186 (50.54%), Query Frame = 1
Query: 1 YEPIYEWGHGDADTLAPFVALKLEGGARLELMPDRFVPTAPANAPGGTPLLKRARDVARGDAVWVFDAMMSTEPTPRAVLDSTLAVKRGLWNPYTLSGTIVANGVVASSHSAWFADGAFDSLSLPFSALPGIYQAALATVRALRALLGAARYNALYDKIDARLVLTHFAAGNLGAVGDVVGAARGV 558
+ IY +GH D + + FV L+L LEL FVPT G KRA+DV GD + ++ TP V ++ K GL+NP TL GTIV NGV AS HS WF D FD+L L LP YQA L+ R L LLG Y ALY IDAR+ + F N G + A G+
Sbjct: 295 FSEIYAFGHRDLEQKSDFVNLELSHSKTLELSRLHFVPTL---LKAGGVEFKRAQDVLVGDVLTASSPTNNSIMTPFPVTRISIVTKPGLYNPLTLQGTIVVNGVAASVHSEWFLDALFDALGLTVY-LPAAYQAILSPARLLYTLLGHDSYLALYKWIDARINVAEFGTENGGKIAAAALLASGI 476
BLAST of jgi.p|Trimin1|159396 vs. uniprot
Match: A0A0D2JVF7_9CHLO (HintN domain-containing protein n=1 Tax=Monoraphidium neglectum TaxID=145388 RepID=A0A0D2JVF7_9CHLO) HSP 1 Score: 111 bits (278), Expect = 7.610e-25 Identity = 73/159 (45.91%), Postives = 93/159 (58.49%), Query Frame = 1
Query: 1 YEPIYEWGHGDADTLAPFVALKLEGGARLELMPDRFVPTAPAN-APG-GTPLLKRARDVARGDAVWVFDAMMSTEPTPRAVLDSTLAVKRGLWNPYTLSGTIVANGVVASSHSAWFADGAFDSLSLPFSALPGIYQAALATVRALRALLGAARYNALYD 471
Y+ +Y +GH DA A FV L+L GG LEL PD FVP A APG + + ARDVA GD V V A AV+ ++ +RGL+NPYTL GTIV +GV+AS+HS+W DG F + + LP YQA A +RAL +LG A +A D
Sbjct: 366 YQDVYFFGHKDAAATARFVRLELAGGRALELTPDHFVPVLAAGVAPGLASARMTYARDVAEGDTVMVL-AEGGGGLQAAAVVRASHMRRRGLFNPYTLGGTIVVDGVLASAHSSWVLDGTFGAAGAS-ARLPAAYQALFAPLRALYRMLGPAAMSAACD 522
BLAST of jgi.p|Trimin1|159396 vs. uniprot
Match: D8T5C1_SELML (HintN domain-containing protein n=2 Tax=Selaginella moellendorffii TaxID=88036 RepID=D8T5C1_SELML) HSP 1 Score: 111 bits (277), Expect = 1.530e-24 Identity = 76/186 (40.86%), Postives = 95/186 (51.08%), Query Frame = 1
Query: 1 YEPIYEWGHGDADTLAPFVALKLEGGARLELMPDRFVPTAPANAPGGTPLLKRARDVARGDAVWVFDAMMSTEPTPRAVLDSTLAVKRGLWNPYTLSGTIVANGVVASSHSAWFADGAFDSLSLPFSALPGIYQAALATVRALRALLGAARYNALYDKIDARLVLTHFAAGNLGAVGDVVGAARGV 558
+ IY +GH D + FV L+L LEL FVPT G KRA+DV GD + ++ TP V ++ K GL+NP TL GTIV NGV AS HS WF D FD+L L + LP YQA L+ R L LLG Y ALY+ IDAR+ + F N G + A G+
Sbjct: 500 FSEIYAFGHRDLGQKSDFVNLELSHSKTLELSRLHFVPTL---LKAGGVKFKRAQDVLVGDVLTASSPTNNSIMTPFPVTRISIVTKPGLYNPLTLQGTIVVNGVAASVHSDWFLDALFDALGLT-AYLPAAYQAILSPARFLYTLLGHDSYLALYNWIDARINVAEFGTENGGKIAAAALLASGI 681
BLAST of jgi.p|Trimin1|159396 vs. uniprot
Match: D8RTU0_SELML (HintN domain-containing protein n=1 Tax=Selaginella moellendorffii TaxID=88036 RepID=D8RTU0_SELML) HSP 1 Score: 109 bits (273), Expect = 2.430e-24 Identity = 76/183 (41.53%), Postives = 93/183 (50.82%), Query Frame = 1
Query: 10 IYEWGHGDADTLAPFVALKLEGGARLELMPDRFVPTAPANAPGGTPLLKRARDVARGDAVWVFDAMMSTEPTPRAVLDSTLAVKRGLWNPYTLSGTIVANGVVASSHSAWFADGAFDSLSLPFSALPGIYQAALATVRALRALLGAARYNALYDKIDARLVLTHFAAGNLGAVGDVVGAARGV 558
IY +GH D + + FV L+L LEL FVPT G KRA+DV GD + ++ TP V ++ K GL+NP TL GTIV NGV AS HS WF D FD+L L + LP YQA L R L LLG Y ALY IDAR+ + F N G + A G+
Sbjct: 278 IYAFGHRDLEQKSDFVNLELSHSKTLELSRLHFVPTL---LKAGGVEFKRAQDVLVGDVLTASSPTNNSIMTPFPVTRISIVTKPGLYNPLTLQGTIVVNGVAASVHSDWFLDALFDALGLT-AYLPAAYQAILFPARLLYTLLGHDSYLALYKWIDARINVAEFGTENGGKIAAAALLASGI 456
BLAST of jgi.p|Trimin1|159396 vs. uniprot
Match: A0A7I4CRB7_PHYPA (HintN domain-containing protein n=1 Tax=Physcomitrium patens TaxID=3218 RepID=A0A7I4CRB7_PHYPA) HSP 1 Score: 105 bits (263), Expect = 6.590e-23 Identity = 70/179 (39.11%), Postives = 92/179 (51.40%), Query Frame = 1
Query: 1 YEPIYEWGHGDADTLAPFVALKLEG-----------GARLELMPDRFVPTAPANAPGGTPLLKRARDVARGDAVWVFDAMMSTEPTPRAVLDSTLAVKRGLWNPYTLSGTIVANGVVASSHSAWFADGAFDSLSLPFSALPGIYQAALATVRALRALLGAARYNALYDKIDARLVLTHF 504
YE IY +GH DA A +V L L+ +LEL P F G KRA+DV GD +W + + E +P V D + K+GL+NP+TL GTI+ NGV AS+HS WF DGAFD+L L +P YQ LA +R LG Y LY ++DA + + F
Sbjct: 274 YEDIYAFGHKDALAAANYVQLSLKPVGANMSDPALESTKLELTPLHFT----VILSGSEITYKRAQDVRVGDMMWAQASTHAAELSPYLVTDISTVEKQGLYNPFTLGGTIIVNGVAASAHSEWFLDGAFDALGLTHW-IPSAYQMVLAPMRLAYYGLGKQAYLDLYLRLDALVDVAQF 447
BLAST of jgi.p|Trimin1|159396 vs. uniprot
Match: A0A2V0NVE9_9CHLO (HintN domain-containing protein n=1 Tax=Raphidocelis subcapitata TaxID=307507 RepID=A0A2V0NVE9_9CHLO) HSP 1 Score: 104 bits (260), Expect = 2.360e-22 Identity = 72/169 (42.60%), Postives = 90/169 (53.25%), Query Frame = 1
Query: 1 YEPIYEWGHGDADTLAPFVALKLEGGARLELMPDRFVPT----APANAPGGTPLLKR------ARDVARGDAVWVFDAMMSTEPTPRAVLDSTLAVKRGLWNPYTLSGTIVANGVVASSHSAWFADGAFDSLSLPFSALPGIYQAALATVRALRALLGAARYNALYDKI 477
YE +Y +GH DA + A FV L L+GGA LEL PD FVP A A A GG R ARDV GD + V + AV ++ +RGL+NPYTL GTIV +GV+AS+HS W DGA +L ALP +Q A +R L A +G A D +
Sbjct: 341 YEDVYFFGHRDAASDAAFVRLGLDGGAALELTPDHFVPVLRAGAAAPASGGVAEAMRGARMTYARDVKPGDTLLVTAGPGALRAA--AVRSASAVARRGLFNPYTLGGTIVVDGVLASAHSGWLVDGAAAALGASH-ALPAFFQGLFAPLRLLYAAVGPEAMQAFGDAL 506
BLAST of jgi.p|Trimin1|159396 vs. uniprot
Match: A0A2V0NNQ2_9CHLO (HintN domain-containing protein n=1 Tax=Raphidocelis subcapitata TaxID=307507 RepID=A0A2V0NNQ2_9CHLO) HSP 1 Score: 101 bits (251), Expect = 3.820e-21 Identity = 69/159 (43.40%), Postives = 86/159 (54.09%), Query Frame = 1
Query: 1 YEPIYEWGHGDADTLAPFVALKLEGGARLELMPDRFVPT--APANAPGGTPL---------LKRARDVARGDAVWVFDAMMSTEPTPRAVLDSTLAVKRGLWNPYTLSGTIVANGVVASSHSAWFADGAFDSLSLPFSALPGIYQAALATVRALRALLG 444
YE +Y +GH DA + A FV L L+GGA L L PD FVP A + A PL + AR V GD + V D +V+ S RGL+NPYTL GTIV +GV+AS+HS W DGA +L ALP ++QA A +RAL A G
Sbjct: 331 YEDVYFFGHRDAASDAAFVRLGLDGGAELLLTPDHFVPVLRAGSEAAARAPLAAEALAGARMTYARAVTAGDVLAVADGAGGLRAA--SVISSEAVRARGLFNPYTLGGTIVVDGVLASAHSGWLIDGAAAALGASH-ALPAVFQALFAPLRALYAAAG 486
BLAST of jgi.p|Trimin1|159396 vs. uniprot
Match: A0A7J7PF77_9CHLO (Uncharacterized protein n=1 Tax=Scenedesmus sp. NREL 46B-D3 TaxID=2650976 RepID=A0A7J7PF77_9CHLO) HSP 1 Score: 94.0 bits (232), Expect = 2.260e-20 Identity = 52/105 (49.52%), Postives = 64/105 (60.95%), Query Frame = 1
Query: 217 EPTPRAVLDSTLAVKRGLWNPYTLSGTIVANGVVASSHSAWFADGAFDSLSLPFSALPGIYQAALATVRALRALLGAARYNALYDKIDARLVLTHFAAGNLGAVG 531
+P V S GL+NPY+LSGTI+ NGVVASSHS WFAD AFD+L LP + LPG+YQA LA R L +G Y LYD++D L + + G VG
Sbjct: 12 QPAAFTVCSSQRVPLDGLYNPYSLSGTILVNGVVASSHSYWFADAAFDALGLPAAWLPGLYQAVLAPARLLFWAMGPQAYTELYDQLDGALDFAQLLSSSGGLVG 116
BLAST of jgi.p|Trimin1|159396 vs. uniprot
Match: A0A0D2LBF5_9CHLO (HintN domain-containing protein n=1 Tax=Monoraphidium neglectum TaxID=145388 RepID=A0A0D2LBF5_9CHLO) HSP 1 Score: 99.0 bits (245), Expect = 2.710e-20 Identity = 62/154 (40.26%), Postives = 86/154 (55.84%), Query Frame = 1
Query: 1 YEPIYEWGHGDADTLAPFVALKLEGGARLELMPDRFVPTAP-ANAPGGTPLLKRARDVARGDAVWVFDAMMSTEPTPRAVLDSTLA-----VKRGLWNPYTLSGTIVANGVVASSHSAWFADGAFDSLSLPFSALPGIYQAALATVRALRALLG 444
Y+ +Y +GH DA A FV L+L GA LEL PD FVP P A A G L AR + V D +++ P A+ ++T++ + GL+NPYTL G+IV +GV+AS+HS W DGAF + +P +QA A +RA A+ G
Sbjct: 407 YQDVYFFGHRDASAAAQFVRLELSSGAALELTPDHFVPVLPGAGAAAGAAALAAAR-MTHARHVRPGDRVLALAPGGAALEEATVSRAAAVAREGLFNPYTLGGSIVVDGVLASAHSGWLVDGAFAAAGASHL-MPAFFQALFAPLRAAYAVAG 558 The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|159396 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
This mRNA is a part of the following gene feature(s):
The following exon feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
spliced messenger RNA >mRNA_3665 ID=mRNA_3665|Name=jgi.p|Trimin1|159396|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=666bp|location=Sequence derived from alignment at Contig_9:1733415..1734080+ (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon. TACGAGCCCATCTACGAATGGGGTCACGGCGACGCTGATACCCTCGCGCCback to top protein sequence of jgi.p|Trimin1|159396 >Trimin1|159396|e_gw1.9.250.1 ID=Trimin1|159396|e_gw1.9.250.1|Name=jgi.p|Trimin1|159396|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=222bp YEPIYEWGHGDADTLAPFVALKLEGGARLELMPDRFVPTAPANAPGGTPLback to top mRNA from alignment at Contig_9:1733415..1734080+ Legend: exonpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_3665 ID=mRNA_3665|Name=jgi.p|Trimin1|159396|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=666bp|location=Sequence derived from alignment at Contig_9:1733415..1734080+ (Tribonema minus UTEX_B_3156 )back to top Coding sequence (CDS) from alignment at Contig_9:1733415..1734080+ >mRNA_3665 ID=mRNA_3665|Name=jgi.p|Trimin1|159396|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=666bp|location=Sequence derived from alignment at Contig_9:1733415..1734080+ (Tribonema minus UTEX_B_3156 )back to top |