mRNA_3649 (mRNA) Tribonema minus UTEX_B_3156

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
Namejgi.p|Trimin1|338061
Unique NamemRNA_3649
TypemRNA
OrganismTribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Homology
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BLAST of jgi.p|Trimin1|338061 vs. uniprot
Match: A0A835YR87_9STRA (DOMON domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YR87_9STRA)

HSP 1 Score: 330 bits (845), Expect = 2.900e-114
Identity = 167/167 (100.00%), Postives = 167/167 (100.00%), Query Frame = 1 
Query:    1 MADEYVFWWSYTDDGWLHARVVSVRARKGDSGYLAFGTSLDGRMTHGTAVIGALDGGSSSSSSGSGSVALHSLSGYSPSDVMPLPADERTLHSASIARFGESGALELKFKLKLAEEWRLRPGGARARGHCLWAYGYAAGEYHAAAGSFQVDFSTRGGADAGAQQVEL 501
            MADEYVFWWSYTDDGWLHARVVSVRARKGDSGYLAFGTSLDGRMTHGTAVIGALDGGSSSSSSGSGSVALHSLSGYSPSDVMPLPADERTLHSASIARFGESGALELKFKLKLAEEWRLRPGGARARGHCLWAYGYAAGEYHAAAGSFQVDFSTRGGADAGAQQVEL
Sbjct:    1 MADEYVFWWSYTDDGWLHARVVSVRARKGDSGYLAFGTSLDGRMTHGTAVIGALDGGSSSSSSGSGSVALHSLSGYSPSDVMPLPADERTLHSASIARFGESGALELKFKLKLAEEWRLRPGGARARGHCLWAYGYAAGEYHAAAGSFQVDFSTRGGADAGAQQVEL 167
The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|338061 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A835YR87_9STRA2.900e-114100.00DOMON domain-containing protein n=1 Tax=Tribonema ... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Contig_9contigContig_9:1533086..1534227 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Tribonema minus UTEX_B_31562021-06-17
Properties
Property NameValue
ProteomeIdTrimin1|338061|MIX46824_1_30
Hectar predicted targeting categoryother localisation
TranscriptId338383
TrackFilteredModels1
ProteinId338061
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|338061gene_3649Tribonema minus UTEX_B_3156 geneContig_9 1533086..1534227 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
exon_3649_1exon_3649_1Tribonema minus UTEX_B_3156 exonContig_9 1533086..1533194 +
exon_3649_2exon_3649_2Tribonema minus UTEX_B_3156 exonContig_9 1533833..1534227 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
CDS_3649CDS_3649Tribonema minus UTEX_B_3156 CDSContig_9 1533086..1533194 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|338061Trimin1|338061|MIX46824_1_30Tribonema minus UTEX_B_3156 polypeptideContig_9 1533086..1534227 +


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>mRNA_3649 ID=mRNA_3649|Name=jgi.p|Trimin1|338061|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=504bp|location=Sequence derived from alignment at Contig_9:1533086..1534227+ (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon.  
ATGGCGGATGAGTACGTCTTTTGGTGGTCGTACACAGACGATGGCTGGCT
CCATGCAAGGGTGGTCAGCGTGCGTGCAAGGAAAGGCGATTCTGGCTACC
TTGCCTTCGGCACAAGCCTCGACGGCAGAATGACTCACGGAACCGCCGTC
ATCGGCGCTCTCGACGGCGGCAGCAGCAGCAGCAGCAGCGGCAGCGGCTC
CGTAGCGCTGCACAGCCTGTCTGGCTACTCCCCCAGCGACGTCATGCCAC
TGCCAGCGGACGAGCGCACACTTCACTCCGCCTCCATCGCGCGCTTCGGT
GAGTCCGGGGCGCTGGAGCTCAAGTTCAAGTTGAAGTTGGCAGAGGAGTG
GCGCCTGCGCCCCGGCGGCGCGCGCGCGCGCGGTCACTGCCTGTGGGCGT
ACGGGTACGCTGCGGGCGAGTACCACGCCGCCGCCGGGTCGTTTCAGGTG
GATTTCAGCACGCGCGGCGGCGCTGACGCTGGCGCGCAGCAAGTGGAGCT
ATGA
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protein sequence of jgi.p|Trimin1|338061

>Trimin1|338061|MIX46824_1_30 ID=Trimin1|338061|MIX46824_1_30|Name=jgi.p|Trimin1|338061|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=168bp
MADEYVFWWSYTDDGWLHARVVSVRARKGDSGYLAFGTSLDGRMTHGTAV
IGALDGGSSSSSSGSGSVALHSLSGYSPSDVMPLPADERTLHSASIARFG
ESGALELKFKLKLAEEWRLRPGGARARGHCLWAYGYAAGEYHAAAGSFQV
DFSTRGGADAGAQQVEL*
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mRNA from alignment at Contig_9:1533086..1534227+

Legend: exonpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_3649 ID=mRNA_3649|Name=jgi.p|Trimin1|338061|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=1142bp|location=Sequence derived from alignment at Contig_9:1533086..1534227+ (Tribonema minus UTEX_B_3156 )
ATGGCGGATGAGTACGTCTTTTGGTGGTCGTACACAGACGATGGCTGGCT
CCATGCAAGGGTGGTCAGCGTGCGTGCAAGGAAAGGCGATTCTGGCTACC
TTGCCTTCGGTAAGTGATTGTGGGCGCATTGGACCTCGAAGTTAGCATTA
TCTCTCAAGGATTACATAGTGAGACAGATTGCCAGTACAGGTCGTTAGGA
GCGCAAGGAAAGTACGCCACATCTCATCTTTAATCGACAAATGGGGCGTT
TGTGCCGATCATAGATGCTGCAGCTGTAACTGAGGGTGATCAAGCAATAT
GGTAGCCGACTGCGTCGAACTCTCATTTATAGCATCCGTTTGTCCCATCC
CTAGCTGCAAGCCAAAAGCTCGCTGCATGTCTTGTATTTACAGCGCCAGA
CCTCCAAGATTATGGGATATGTCTGAATGGTCTGAATCGTGAGAACGCGG
AATTCTATCACCAAATAATGACCAGCCAGCAATGGGTTTGTATGTATCTG
GTCAGCTTGTTGAGCTTGGAGCTGCGGCATCCTCGAGCGCCGCTGTAGCA
GCACTGTTGTGCCTCTGAGACCCACATTGCTTGCTCACCGATGCGGATCA
TGCATTTCACCTCCACTCCTGACCGCACACGTGCACATCCCCTGCCATTG
CGCGGTGCGCGAGTACCGCGGGCTTGTGGCATGCGTCGCTGCAAGAGTGC
GGAAGAATACGGTTTAACGAGAAAGCACTTACGCCACCGCACCGCAGGCA
CAAGCCTCGACGGCAGAATGACTCACGGAACCGCCGTCATCGGCGCTCTC
GACGGCGGCAGCAGCAGCAGCAGCAGCGGCAGCGGCTCCGTAGCGCTGCA
CAGCCTGTCTGGCTACTCCCCCAGCGACGTCATGCCACTGCCAGCGGACG
AGCGCACACTTCACTCCGCCTCCATCGCGCGCTTCGGTGAGTCCGGGGCG
CTGGAGCTCAAGTTCAAGTTGAAGTTGGCAGAGGAGTGGCGCCTGCGCCC
CGGCGGCGCGCGCGCGCGCGGTCACTGCCTGTGGGCGTACGGGTACGCTG
CGGGCGAGTACCACGCCGCCGCCGGGTCGTTTCAGGTGGATTTCAGCACG
CGCGGCGGCGCTGACGCTGGCGCGCAGCAAGTGGAGCTATGA
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Coding sequence (CDS) from alignment at Contig_9:1533086..1534227+

>mRNA_3649 ID=mRNA_3649|Name=jgi.p|Trimin1|338061|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=504bp|location=Sequence derived from alignment at Contig_9:1533086..1534227+ (Tribonema minus UTEX_B_3156 )
ATGGCGGATGAGTACGTCTTTTGGTGGTCGTACACAGACGATGGCTGGCT
CCATGCAAGGGTGGTCAGCGTGCGTGCAAGGAAAGGCGATTCTGGCTACC
TTGCCTTCGGCACAAGCCTCGACGGCAGAATGACTCACGGAACCGCCGTC
ATCGGCGCTCTCGACGGCGGCAGCAGCAGCAGCAGCAGCGGCAGCGGCTC
CGTAGCGCTGCACAGCCTGTCTGGCTACTCCCCCAGCGACGTCATGCCAC
TGCCAGCGGACGAGCGCACACTTCACTCCGCCTCCATCGCGCGCTTCGGT
GAGTCCGGGGCGCTGGAGCTCAAGTTCAAGTTGAAGTTGGCAGAGGAGTG
GCGCCTGCGCCCCGGCGGCGCGCGCGCGCGCGGTCACTGCCTGTGGGCGT
ACGGGTACGCTGCGGGCGAGTACCACGCCGCCGCCGGGTCGTTTCAGGTG
GATTTCAGCACGCGCGGCGGCGCTGACGCTGGCGCGCAGCAAGTGGAGCT
ATGA
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