mRNA_3635 (mRNA) Tribonema minus UTEX_B_3156

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
Namejgi.p|Trimin1|347247
Unique NamemRNA_3635
TypemRNA
OrganismTribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Homology
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BLAST of jgi.p|Trimin1|347247 vs. uniprot
Match: A0A835YLA7_9STRA (Pseudouridine synthase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YLA7_9STRA)

HSP 1 Score: 1146 bits (2965), Expect = 0.000e+0
Identity = 649/649 (100.00%), Postives = 649/649 (100.00%), Query Frame = 2 
Query:   98 MVPTSAGEEKGGVAKRKVALVLGYVGTDFSGLQIDRNSGVRTVESEMETALFNAGVIKESNYGDLSKIGWSRTSRIPLDGFVNIAYASRTDKGVHAAKTVVVAKLLVDQTQFCAAGLNAPLKAAINACLPPDLRVFSVCKVPKGFRGRGECSWRDYEYYLPASLLTDDKATAKFGELLRLFEGTHSFHNFISMKGRELRQTRKEVTLKKWAAYDRRNRTAAAAADDQSDHVPEASVGQSDDNADVVSQSEASDXXXXXXXXXXXXXXXXXXXXASNEPVEEVQEEGDEGEGAAAGGEGAAGGEGVVMRNIMKEMTSSIYRMELEGAPLSVGGSPEPFLRVNVRGQSFLYNQSFLYDQIRLMVGAALAEANGVVPAGWVAAGLETPCTLHFPLVPPQGLLLVSQGFTASKSGNAAVLEPKHLSEVGGTVTQYVGGPRLLCKGRLQALMGEDDVKEAEAFRDAKILPRIASSWMEINAXXXXXXXXXXXXXXXXSGQDWLAWARENNSLRPGAETDALLEAVQSYVGASQERQDAEATKEAFYRTRAFERESALLKECLPKGFVTAVISRFNMLPGNKVMAVEKALVIRMRQDSCQVTXXXXXXXXXXXXXTDPALPRLATIDQLLAAVERIGLETIAAEGGFQPGVAAQA 2044
            MVPTSAGEEKGGVAKRKVALVLGYVGTDFSGLQIDRNSGVRTVESEMETALFNAGVIKESNYGDLSKIGWSRTSRIPLDGFVNIAYASRTDKGVHAAKTVVVAKLLVDQTQFCAAGLNAPLKAAINACLPPDLRVFSVCKVPKGFRGRGECSWRDYEYYLPASLLTDDKATAKFGELLRLFEGTHSFHNFISMKGRELRQTRKEVTLKKWAAYDRRNRTAAAAADDQSDHVPEASVGQSDDNADVVSQSEASDXXXXXXXXXXXXXXXXXXXXASNEPVEEVQEEGDEGEGAAAGGEGAAGGEGVVMRNIMKEMTSSIYRMELEGAPLSVGGSPEPFLRVNVRGQSFLYNQSFLYDQIRLMVGAALAEANGVVPAGWVAAGLETPCTLHFPLVPPQGLLLVSQGFTASKSGNAAVLEPKHLSEVGGTVTQYVGGPRLLCKGRLQALMGEDDVKEAEAFRDAKILPRIASSWMEINAXXXXXXXXXXXXXXXXSGQDWLAWARENNSLRPGAETDALLEAVQSYVGASQERQDAEATKEAFYRTRAFERESALLKECLPKGFVTAVISRFNMLPGNKVMAVEKALVIRMRQDSCQVTXXXXXXXXXXXXXTDPALPRLATIDQLLAAVERIGLETIAAEGGFQPGVAAQA
Sbjct:    1 MVPTSAGEEKGGVAKRKVALVLGYVGTDFSGLQIDRNSGVRTVESEMETALFNAGVIKESNYGDLSKIGWSRTSRIPLDGFVNIAYASRTDKGVHAAKTVVVAKLLVDQTQFCAAGLNAPLKAAINACLPPDLRVFSVCKVPKGFRGRGECSWRDYEYYLPASLLTDDKATAKFGELLRLFEGTHSFHNFISMKGRELRQTRKEVTLKKWAAYDRRNRTAAAAADDQSDHVPEASVGQSDDNADVVSQSEASDXXXXXXXXXXXXXXXXXXXXASNEPVEEVQEEGDEGEGAAAGGEGAAGGEGVVMRNIMKEMTSSIYRMELEGAPLSVGGSPEPFLRVNVRGQSFLYNQSFLYDQIRLMVGAALAEANGVVPAGWVAAGLETPCTLHFPLVPPQGLLLVSQGFTASKSGNAAVLEPKHLSEVGGTVTQYVGGPRLLCKGRLQALMGEDDVKEAEAFRDAKILPRIASSWMEINAXXXXXXXXXXXXXXXXSGQDWLAWARENNSLRPGAETDALLEAVQSYVGASQERQDAEATKEAFYRTRAFERESALLKECLPKGFVTAVISRFNMLPGNKVMAVEKALVIRMRQDSCQVTXXXXXXXXXXXXXTDPALPRLATIDQLLAAVERIGLETIAAEGGFQPGVAAQA 649
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BLAST of jgi.p|Trimin1|347247 vs. uniprot
Match: D8LDS4_ECTSI (Pseudouridylate synthase, putative n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LDS4_ECTSI)

HSP 1 Score: 315 bits (806), Expect = 7.410e-92
Identity = 250/758 (32.98%), Postives = 350/758 (46.17%), Query Frame = 2 
Query:  116 GEEKGGVAKRKVALVLGYVGTDFSGLQIDRNS-GVRTVESEMETALFNAGVIKESNYGDLSKIGWSRTSRIPLDGFVNIAYASRTDKGVHAAKTVVVAKLLVDQTQFCAAGLNAPLKAAINACLPPDLRVFSVCKVPKGFRGRGECSWRDYEYYLPASLLTDDKATAKFGELLRLFEGTHSFHNFISMKGRELRQTRKEVT----LKK------------------------------------------------------WAAYDRRNRTAA------------------------------------AAADDQS--DHVPEASVGQSDD---NADVVSQSEASDXXXXXXXXXXXXXXXXXXXXASNEPVEEVQEEGDEG----------------EGAAAGGEGAAGGEGVVMRNIMKEMTSSIYRMELEGAPLSVG----GSPEPFLRVNVRGQSFLYNQSFLYDQIRLMVGAALAEANGVVPAGWVAAGLETPCTLHFPLVPPQGLLLVSQGFTASKSGNAAVLEPKHLSEVGGTVTQY---VGGPRLLCKGRLQALMGEDDVKEAEAFRDAKILPRIASSWMEINAXXXXXXXXXXXXXXXXSGQDWLAWARENNSLRPGAETDALLEAVQSYVGASQERQDAEATKEAFYRTRAFERESALLKECLPKGFVTAVISRFNMLPGNKVMAVEKALVIRMRQDSCQVTXXXXXXXXXXXXXTDPALPRLATIDQLLAAVERIGLETIAAEGGF 2020
            G E     KRKVA+V+GYVGT F G Q   ++  VRTVE E+ETAL+ AG I +SNYGDL+KIGW RTSR              TDKGVHA+KTV  AKLL+ Q  F A G++   K  +N  LP D+R FSV KVPK FRGR EC+ R+Y YYLP  LL DD+A  KF ELL+LF GTHSFHN+ S KGR+L++ RK V     LKK                                                      W  Y  + ++AA                                    A A+ Q+  D  PE++  +S +   + D V  ++A                    XX +   V  V+ +G                   E A  GGE     EG   + +++E+ +SIYR E     +S       +P+ F+R+++RG++F+YNQ      IRLM+G AL EA G + +G+V A L+TP  L  PL P +GL+L SQ FT  +  NA VL+P+ L  +GGT+  +     G  +   GRLQ L+  + ++EA  + D  ILP +A +W                      G   L             + + LL+A+   +    E +     K   +R  A ER S   K+ LPK   T +I +F +LPGNKV A+++ +V RM +                       LP LA ++++LA +E+IG++ +A +GGF
Sbjct:   20 GNELSKPTKRKVAIVVGYVGTAFHGWQQSTDAQNVRTVEGELETALWKAGAIADSNYGDLNKIGWGRTSR--------------TDKGVHASKTVAAAKLLLPQETFTATGMSQYGKDKLNEKLPDDIRCFSVSKVPKSFRGREECTLREYTYYLPRELLPDDEALGKFRELLKLFVGTHSFHNYASTKGRQLKEVRKRVKASIDLKKSGGKPAPGPEKAAGGAVSVSAPGSEXXXXXXXXXXXXXXXXXXXXXRRWVSKDEWRTYRYKKKSAADQKADDAWFGKXXXXXXXXXXXXXXXXXXXXXXXXXAGAEQQASGDEGPESASPRSIEGGTSGDAVGSADAGSAAAVAAAVTPKDVAGAGGXXXAEGAV--VKSDGXXXXXXXXXXXXXXAPGAQEAAGVGGED----EGPEKQILLRELRTSIYRCEALDGIVSYTRPGQDTPDEFVRIDIRGKAFVYNQ------IRLMIGGALGEARGDLWSGFVEAALKTPYKLRVPLAPAEGLVLESQAFT--RHTNALVLDPRDLGSIGGTLAVWGESKEGNAMKTTGRLQTLLTREQLREAARWSDKHILPAVADAW-------------------ETRGTAKLFLEAVEKFFVGQQQEEPLLKAIAENLSEISESERRAEEKYNKFRVLAKERGSTKYKDLLPKSIATGIICKFRLLPGNKVSAIQRGVVERMNKGE---------------------LPPLAEVEEILAFLEKIGVDQVALDGGF 709
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BLAST of jgi.p|Trimin1|347247 vs. uniprot
Match: A0A6H5L6M3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L6M3_9PHAE)

HSP 1 Score: 225 bits (573), Expect = 2.330e-59
Identity = 225/674 (33.38%), Postives = 299/674 (44.36%), Query Frame = 2 
Query:  116 GEEKGGVAKRKVALVLGYVGTDFSGLQIDRNS-GVRTVESEMETALFNAGVIKESNYGDLSKIGWSRTSRIPLDGFVNIAYASRTDKGVHAAKTVVVAKLLVDQTQFCAAGLNAPLKAAINACLPPDLRVFSVCKVPKGFRGRGECSWRDYEYYLPASLLTDDKATAKFGELLRLFEGTHSFHNFISMKGRELRQTRKEVT----LKK--------------------------------WAAYDRRNRTAAAAADDQSDHVPEASVGQSDDNADVVSQSEASDXXXXXXXXXXXXXXXXXXXXASNEPVEEVQEEGDEGEGAAA--GGEGAAGGEGVVMRNIMKEMTSSIYRMELEGAPLSVGGSPEPFLRVNVRGQSFLYNQSFLYDQIRLMVGAALAEANGVVPAGWVAAGLETPCTLHFPLVPPQGLLLVSQGFTASKSGNAAVLEPKHLSEVGGTVTQYVGGPRLLCKGRLQALMGEDDVKEAEAFRDAKILPRIASSWMEINAXXXXXXXXXXXXXXXXSGQDWLAWARENNSLRPGAETDALLEAVQSYVGASQERQDAEATKEAFYRTRAFERESALLKECLPKGFVTAVISRFNMLPGNKVMAVEKALVIRMRQDSCQVTXXXXXXXXXXXXXTDPALPRLATIDQLLAAVERIGLETIAAEGGF 2020
            G E     KRKVA+V+GYVGT F G Q   ++  VRTVE E+ETAL+ AG I +SNYGDL+KIGW RTSR              TDKGVHA+KTV  AKLL+ Q  F AAG++   K  +N  LP D+R FSV KVPK FRGR EC+ R+Y YYLP  LL DD +  KF ELL+LF GTHSFHN+ S KGR+L++ RK V     LKK                                  +  ++ R  +        +  +++  Q  D+A    QS    XXXXXXXXXXXXXXXXXXXX            GDEG  +A+    EG   G+ V   +       S+  +     P  V                             ++      EA GV   G    G E    L        G L V   +  SK GNA                       +   GRLQ L+  + ++EAE +    ILP +A +W                      G   L             + + LL+A+   +    E +     K   +R  A ER S   K+ LPK   T +I +F +LPGNKV A+++ +V RM +                       LP LA ++++LA +E+IG++ +A +GGF
Sbjct:   99 GNELSKPTKRKVAIVVGYVGTAFHGWQQSTDAQNVRTVEGELETALWKAGAIADSNYGDLNKIGWGRTSR--------------TDKGVHASKTVAAAKLLLPQETFTAAGMSQYGKDKLNENLPDDIRCFSVSKVPKSFRGREECTLREYTYYLPRELLPDDGSLGKFRELLKLFVGTHSFHNYASTKGRQLKEVRKRVKASIDLKKSGGKPAQEAGGTAXXXXXXXXXXXXXXXXXXXXESGSKKRRWVSKDEWRTYRYKKKSTADQKADDAWFGKQSAXXXXXXXXXXXXXXXXXXXXXXXXXXXXAG-----GDEGPESASPRSVEGGTSGDAVGTAD-----AGSVAAVAAVVTPKDVASXXXXXXXXXXXXXXXXXXXXXXXXXASVVSAPGAQEAEGV---GGEDEGPEKQILLRELRTSIGGTLAV---WGDSKEGNA-----------------------MKTTGRLQTLLTREQLREAERWSYEHILPAVADAW-------------------ETRGTAKLFLEAVEKFFVGQQQEEPLLKAIAENLSEISESERRAEEKYNKFRVLAKERGSTKYKDLLPKSIATGIICKFRLLPGNKVSAIQRGVVERMNKGE---------------------LPPLAEVEEILAFIEKIGVDQVALDGGF 679
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BLAST of jgi.p|Trimin1|347247 vs. uniprot
Match: A0A024U417_9STRA (tRNA pseudouridine(38-40) synthase n=1 Tax=Aphanomyces invadans TaxID=157072 RepID=A0A024U417_9STRA)

HSP 1 Score: 181 bits (459), Expect = 3.790e-45
Identity = 194/646 (30.03%), Postives = 258/646 (39.94%), Query Frame = 2 
Query:  122 EKGGVAKRKVALVLGYVGTDFSGLQIDRNSGVRTVESEMETALFNAGVIKESNYGDLSKIGWSRTSRIPLDGFVNIAYASRTDKGVHAAKTVVVAKLLVDQTQFC-AAGLNAPLKAAINACLPPDLRVFSVCKVPKGFRGRGECSWRDYEYYLPASLLTD--------DKATAKFGELLRLFEGTHSFHNFISMKGRELRQTRKEVTLKKWAAYDRRNRTAAAAADDQSDHVPEASVGQSDDNADVVSQSEASDXXXXXXXXXXXXXXXXXXXXASNEPVEEVQEEGDEGEGAAAGGEGAAGGEGVVMRNIMKEMTSSIYRMELEGAPLSVGGSPEPFLRVNVRGQSFLYNQSFLYDQIRLMVGAALAEANGVVPAGWVAAGLETPCTLHFPLVPPQGLLLVSQGFTASKSGNAAVLE---PKHLSEVGGTVTQYVGGPRLLCKGRLQALMGEDDVKEAEAFRDAKILPRIASSWMEINAXXXXXXXXXXXXXXXXSGQDWLAWARENNSLRPGAETDALLEAVQSYVGASQERQDAEATKEAFYRTRAFERESALLKEC---LPKGFVTAVISRFNMLPGNKVMAVEKALVIRMRQDSCQVTXXXXXXXXXXXXXTDPALPRLATIDQLLAAVERIGLETIAAEG 2014
            E G   K KVALV GY GT + G+QI  N  V TVE  +  ALF AG I ESNYGD+SKIGWSR+SR              TDKGVHA+  V+  KLLV   +    +G  A L   INA LP D+RVF+  KV + FR R +C  R+YEY+LP S L+         D A   F E L  FEG H FHNF   +    R   K    K  A   RR R A                           Q E  D                        P EEV E  +EG+   A     +   GV  R  ++  + SIY       P   G   EPF+ +++ G SFL+NQ      IR MVG A+A A G +      A L T   +H P  P +GL+L S GF A +   + + +   P++L         + G        R+     ED++     FR+  I   +   W                         + +W  + N           LE V            A+   +A Y  R   RE+ ++ +    LP+ F T V   F + PG  +      L +R+                      D +LP  AT + LL  +  IGL+T+A  G
Sbjct:   31 ESGKKRKVKVALVTGYTGTGYHGVQIQENVNVPTVEHAVREALFKAGCILESNYGDMSKIGWSRSSR--------------TDKGVHASSIVLSGKLLVHGNRIDPVSGRIAHLPDQINAYLPQDIRVFTATKVHQSFRAREDCILREYEYFLPLSFLSSLCPPEISADDALKTFLETLPKFEGIHDFHNFTKQR----RHFYKLEAQKLLAKERRRQRNA---------------------------QDEVVDDAT---------------------PDEEVVE--NEGDDIEAEPNDISLVNGV--RKTLQRHSRSIYACRGALVPDVFG---EPFIHIHLTGGSFLFNQ------IRCMVGGAIAVATGAMAPTLFDAALRTNHVVHVPTAPAEGLVLSSCGFGAKQHLISLLRDHNTPRNL---------FAGSNPNQAPHRVLVSDTEDELHRMLQFRNEVIYKEVVRMWHVSEHVAAWPTH-------------FASWTEKFNETTDERTLRVALEKVL-----------ADDASKAAYSDRIV-REARVIGDAVKVLPRAFSTVVCIHFGITPGAYIADAIAGLKLRI---------------------LDHSLPVDATQEDLLDYMSNIGLDTLARMG 542
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BLAST of jgi.p|Trimin1|347247 vs. uniprot
Match: A0A329S330_9STRA (PseudoU_synth_1 domain-containing protein n=3 Tax=Phytophthora TaxID=4783 RepID=A0A329S330_9STRA)

HSP 1 Score: 177 bits (449), Expect = 1.450e-43
Identity = 174/582 (29.90%), Postives = 247/582 (42.44%), Query Frame = 2 
Query:  134 VAKRKVALVLGYVGTDFSGLQIDRNSGVRTVESEMETALFNAGVIKESNYGDLSKIGWSRTSRIPLDGFVNIAYASRTDKGVHAAKTVVVAKLLVDQTQFC--AAGLNAPLKAAINACLPPDLRVFSVCKVPKGFRGRGECSWRDYEYYLPASLLTD------------DKATAKFGELLRLFEGTHSFHNFISMKGRELRQTRKEVTLKKWAAYDRRNRTAAAAADDQSDHVPEASVGQSDDNADVVSQSEASDXXXXXXXXXXXXXXXXXXXXASNEP--VEEVQEEGDEGEGAAAGGEGAAGGEGVVMRNIMKEMTSSIYRMELEGAPLSVGGSPEPFLRVNVRGQSFLYNQSFLYDQIRLMVGAALAEANGVVPAGWVAAGLETPCTLHFPLVPPQGLLLVSQGFTASKSGNAAVLEPKHLSEVGGTVTQYVGGPRLLCKGRLQA----LMGEDDVKEAEAFRDAKILPRIASSWMEINAXXXXXXXXXXXXXXXXSGQDWLAWARENNSLRPGAETDALLEAVQSYVGASQERQDAEATKEAFYRTRAFERESALLKECLPKGFVTAVISRFNMLPG 1819
            + KRKVA+V GY+GTD  GLQ++ N  V+T+E ++  A+F AG ++ESN+ DL KI W+R+SR              TDKGVHA   V   KLL+D+       +G    LK A+NA LP ++RVFS  +V K F  R  C  R+YEY++P S L D            D+A A+F   LR +EG H FHNF   +    +   K    K++ A +RRN           D V + +V  SDD                                A  EP  V++  EE  + E            E  + R ++     SIY       P   GG  EP LRV++ GQ+FL NQ      IR MVG ALA A   +      A L T   +  P+ P +GL+L+S  F                     TV+ Y     +L K R       L+   + +E   FR+  I   +ASSW                       + +L    E+N      E   +L  +     A++ +  +   +  F  T  + R+ ALL    PK F T +  R+++ PG
Sbjct:   51 LVKRKVAIVTGYMGTDHHGLQLNEN--VKTIEDDIRHAIFQAGAMRESNFEDLGKIDWARSSR--------------TDKGVHAGCIVFSGKLLIDEENKMDPVSGRVNGLKEALNASLPENIRVFSCTRVSKRFSARKNCVLREYEYFMPLSFLKDSLIGSDGADFDTDEAVAEFCRALRRYEGVHDFHNFTRSRSYFYKVQAKR---KQYNAQNRRNAAEV-------DTVNDVAVEDSDDE------------------------------DAEEEPAAVDDYSEESSQFED-----------EEELTRKLLPRHRRSIYSCSGTLVP-DFGG--EPHLRVHIVGQAFLLNQ------IRCMVGGALAVATKGMSRVEFDAALLTNRIVRVPIAPAEGLVLLSSSFGGKSH----------------TVSLYEDPNTVLAKERKDVVHRILLNPSEDEEMRKFREEVIYKEVASSW--------------DLDEKMDRWRSYLERCYESNGRLDEDELSGVLYELDQAKLATKNKNQSYVEQNRFELTE-YGRQGALL----PKQFATKLCVRYSVAPG 521
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BLAST of jgi.p|Trimin1|347247 vs. uniprot
Match: A0A6A3ZI15_9STRA (PseudoU_synth_1 domain-containing protein n=5 Tax=Phytophthora TaxID=4783 RepID=A0A6A3ZI15_9STRA)

HSP 1 Score: 176 bits (445), Expect = 3.880e-43
Identity = 156/477 (32.70%), Postives = 209/477 (43.82%), Query Frame = 2 
Query:  134 VAKRKVALVLGYVGTDFSGLQIDRNSGVRTVESEMETALFNAGVIKESNYGDLSKIGWSRTSRIPLDGFVNIAYASRTDKGVHAAKTVVVAKLLVDQTQFC--AAGLNAPLKAAINACLPPDLRVFSVCKVPKGFRGRGECSWRDYEYYLPASLLTD------------DKATAKFGELLRLFEGTHSFHNFISMKGRELRQTRKEVTLKKWAAYDRRNRTAAAAADDQSDHVPEASVGQSDDNADVVSQSEASDXXXXXXXXXXXXXXXXXXXXASNEPVEEVQEEGDEGEGAAAGGEGAAGGEGVVMRNIMKEMTSSIYRMELEGAPLSVGGSPEPFLRVNVRGQSFLYNQSFLYDQIRLMVGAALAEANGVVPAGWVAAGLETPCTLHFPLVPPQGLLLVSQGFTASKSGNAAVLEPKHLSEVGGTVTQYVGGPRLLCKGRL----QALMGEDDVKEAEAFRDAKILPRIASSW 1510
            + KRKVA+V GY+GT + GLQ+  N  V T+E E+  A+F AG ++ESN+ DL KI W+R+SR              TDKGVHA+  V   KLL+D+      A+G    LK A+NA LP ++RVFS  +V K F  R  C  R+YEY++P S L D            D+A A+F   LR +EG H FHNF   +    +   K     +W    +RN   A A  D                 DVV   +A D   XXXXX             S E  +   EEG                   + R ++     SIY       P   G   EP LRV++ GQ+FL NQ      IR MVG ALA A   +      A L T   +  P+ P +GL+L+S  F                     TV+ Y      L K R     + L+   + +E E FR+  I   + +SW
Sbjct:   39 LVKRKVAIVSGYMGTGYHGLQM--NDNVETIEDEIRRAIFKAGAMRESNFEDLGKIDWARSSR--------------TDKGVHASCIVFSGKLLIDEENKVDPASGRVKGLKEALNASLPDNIRVFSCTRVNKRFSARKNCVLREYEYFMPLSFLKDSIIGSDGADLDTDEAVAEFCRALRRYEGVHDFHNFTRSRSYFYKMQAKR---NQWKMEHQRNAAEAQATADD----------------DVVEAEDADDGDAXXXXXPTTIDDY------SEESSQFEDEEG-------------------LTRKLLTRHRRSIYSCSGSLIPDFCG---EPHLRVHIVGQAFLLNQ------IRCMVGGALAVATKGMSRVAFDAALLTNRIVRVPIAPAEGLVLLSSSFGGKLH----------------TVSLYPDSNTTLAKERKDLVHRILLNRHEDEEMEKFREEVIYKEVGNSW 430
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BLAST of jgi.p|Trimin1|347247 vs. uniprot
Match: V9E711_PHYPR (tRNA pseudouridine(38-40) synthase n=7 Tax=Phytophthora parasitica TaxID=4792 RepID=V9E711_PHYPR)

HSP 1 Score: 172 bits (437), Expect = 4.890e-42
Identity = 174/581 (29.95%), Postives = 245/581 (42.17%), Query Frame = 2 
Query:  134 VAKRKVALVLGYVGTDFSGLQIDRNSGVRTVESEMETALFNAGVIKESNYGDLSKIGWSRTSRIPLDGFVNIAYASRTDKGVHAAKTVVVAKLLVDQTQFC--AAGLNAPLKAAINACLPPDLRVFSVCKVPKGFRGRGECSWRDYEYYLPASLLTD------------DKATAKFGELLRLFEGTHSFHNFISMKGRELRQTRKEVTLKKWAAYDRRNRTAAAAADDQSDHVPEASVGQSDDNADVVSQSEASDXXXXXXXXXXXXXXXXXXXXASNEPVEEVQEEGDEGEGAAAGGEGAAGGEGVVMRNIMKEMTSSIYRMELEGAPLSVGGSPEPFLRVNVRGQSFLYNQSFLYDQIRLMVGAALAEANGVVPAGWVAAGLETPCTLHFPLVPPQGLLLVSQGFTASKSGNAAVLEPKHLSEVGGTVTQYVGGPRLLCKGRL----QALMGEDDVKEAEAFRDAKILPRIASSW-MEINAXXXXXXXXXXXXXXXXSGQDWLAWARENNSLRPGAETDALLEAVQSYVGASQERQDAEATKEAFYRTRAFERESALLKECLPKGFVTAVISRFNMLPG 1819
            + KRKVA+V GY+GT + GLQ+  N  V+T+E ++  A+F+AG ++ESN+ DL KI W+R+SR              TDKGVHA   V   KLL+D+       +G    LK A+NA LP ++RVFS  +V K F  R  C  R+YEY++P S L D            D+A A+F   LR +EG H FHNF   +    +   K    K + A  +RN     AA+D+SD V         D  DV  +S   D                         V++  EE  + E            E  + R ++     SIY       P   G   EP LRV++ GQ+FL NQ      IR MVG ALA A   +      A L T   +  P+ P +GL+L+S  F                     TV+ Y      L K R     + L+   + +E   FR+  I   I+ SW ME                     + +L    E N      E  A+L  +     A++ +  A   +  F  T    +    L   LPK F T +  R+++ PG
Sbjct:   51 LVKRKVAIVTGYMGTGYHGLQL--NDNVKTIEDDVRQAIFDAGAMRESNFVDLGKIDWARSSR--------------TDKGVHAGCIVFSGKLLIDEENKMDPVSGRVYGLKEALNASLPDNIRVFSCTRVSKRFSARKNCVLREYEYFMPLSFLKDSLVGSDGEDFDTDEAVAEFCRALRRYEGVHDFHNFTRSRSYFYKMQAKR---KHYRANYQRN-----AAEDESDDV---------DAEDVEDESAEVDSV-----------------------VDDYSEESSQFED-----------EEELTRKLLLRHRRSIYSCSGTLVPDFCG---EPHLRVHIVGQAFLLNQ------IRCMVGGALAVATKGMSRVEFDAALLTNRIVRVPIAPAEGLVLLSSSFGGKSH----------------TVSLYEDPNTELAKERKDVVHRVLLSRKEDEEMRQFREEVIYKEISRSWDMEEKMDRW---------------RAYLERCYEANERLNQDELSAVLYEMDQAKLATKNKNQAHVEQNRFELTEYGRKSVGAL---LPKQFATKLCVRYSVAPG 521
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BLAST of jgi.p|Trimin1|347247 vs. uniprot
Match: W7U6V3_9STRA (Pseudouridylate synthase n=2 Tax=Monodopsidaceae TaxID=425072 RepID=W7U6V3_9STRA)

HSP 1 Score: 176 bits (445), Expect = 5.320e-42
Identity = 200/683 (29.28%), Postives = 289/683 (42.31%), Query Frame = 2 
Query:  140 KRKVALVLGYVGTDFSGLQIDR----NSGVRTVESEMETALFNAGVIKESNYGDLSKIGWSRTSRIPLDGFVNIAYASRTDKGVHAAKTVVVAKL--LVDQTQFCAAGLNAPLKAAINACLPPDLRVFSVCKVPKGFRGRGECSWRDYEYYLPASLL-------------TDDKATAKFGELLRLFEGTHSFHNFISMKGREL--RQTRKEVTLKKWAAYDRRN-RTAAAAADDQSDHVPEASVGQSDDNA-------------------------------DVVSQSEASDXXXXXXXXXXXXXXXXXXXXAS-------NEPVEEVQEEGDEGEGAAAGGEG------------AAG--GEGVVM--------RNIMKEMTSSIYRMELEGAPLSVGGSPEPFLRVNVRGQSFLYNQSFLYDQIRLMVGAALAEANGVVPAGWVAAGLETPCTLHFPLVPPQGLLLVSQGFTASKSGNAAVLEPKHLSEVGGTVTQYVGGPRLLCKGRLQALMGEDDVKEAEAFRDAKILPRIASSWMEINAXXXXXXXXXXXXXXXXSGQDWLAWARENNSLRPGAETDALL-EAVQSYVGASQERQDAEATKEAFYRTRA---FERESA----------------LLKECL-------PKGFVTAVISRFNMLPGNKVMAVEKALVIRM 1861
            KR++ALV+GYVGT +SGLQ        + V T+ES +E ALF+AG I+ESN+GDL KIGW+R               SRTDKGVHAA+ VV AKL   VD  +  +   +      INACLP D+RV S  K  K FR R   S+R+Y Y +P  LL             + +   A+F +LL  F+GTH+FHNF  +K R+L  R   K  + + W   ++R  R   A A        E   G++ +                                 +V   S A                      AS       N+P     +E  E     AGGEG            A G   +GV          + ++K + ++IYR E  G  L VGG  + F+ V   G SFLYNQ      IRL+VG A+A A+G+ P   +   L++P  ++ PL P +GL L    F   KS N  V++   L     T  +        C  ++ AL+ ++  + A+ F   +IL  I  +W                       ++W  +AR   +     E +A L +  + +  +  + ++A+A +E F R       +RE A                L KE L       P+ F T +I RF + PG +V  V + L + M
Sbjct:  119 KRRMALVIGYVGTKYSGLQKSEPGPGEAEVITIESVLEKALFDAGYIRESNFGDLDKIGWAR--------------CSRTDKGVHAARNVVSAKLELWVDDMEGDSPNWSERAVKEINACLPDDIRVHSCAKATKSFRPRDAVSFREYVYIVPLELLRPFPGTGRAVADESSEALIARFCDLLVRFQGTHNFHNFTKIKSRDLIRRLKAKAGSSRAWVHNNQRGGREGEAIAAGGEASTGEDGTGRAGEKGGEYXXXXXXXXXXXXXXXXXXXXXXEEWTAPNVGGLSTAKVDGVRRFNTEVVLNPLFQILRASPQNQRARNDPDRRKSKE--ERGWVGAGGEGGRQKDDLRVEHVAIGDPADGVTTALWDLTRYQGVLKMVRTNIYRCE--GRALQVGG--KDFVAVTFHGSSFLYNQ------IRLLVGGAIAVASGLFPEAALPMALDSPYLIYSPLAPAEGLFLRHITF-GRKSKNPVVMDEADLP----TAAEMAAAN---CP-QVYALLSKEAGQRADNFERERILTEITGAWTPELL------------------EEWRRYAR---AFLIDEEVEAALSKKFRQWRESMAKLEEAKAARELFRRQSMATWMKREGAEGEMSLGGAGEDKVGALEKEILRSYRRWMPQRFATDLIIRFRLKPGKQVGNVLRGLAVGM 745
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BLAST of jgi.p|Trimin1|347247 vs. uniprot
Match: A0A833SRU5_PHYIN (tRNA pseudouridine synthase n=1 Tax=Phytophthora infestans TaxID=4787 RepID=A0A833SRU5_PHYIN)

HSP 1 Score: 172 bits (436), Expect = 5.780e-42
Identity = 179/645 (27.75%), Postives = 265/645 (41.09%), Query Frame = 2 
Query:  134 VAKRKVALVLGYVGTDFSGLQIDRNSGVRTVESEMETALFNAGVIKESNYGDLSKIGWSRTSRIPLDGFVNIAYASRTDKGVHAAKTVVVAKLLVDQTQFC--AAGLNAPLKAAINACLPPDLRVFSVCKVPKGFRGRGECSWRDYEYYLPASLLTD------------DKATAKFGELLRLFEGTHSFHNFISMKGRELRQTRKEVTLKKWAAYDRRNRTAAAAADDQSDHVPEASVGQSDDNADVVSQSEASDXXXXXXXXXXXXXXXXXXXXASNEPVEEVQEEGDEGEGAAAGGEGAAGGEGVVMRNIMKEMTSSIYRMELEGAPLSVGGSPEPFLRVNVRGQSFLYNQSFLYDQIRLMVGAALAEANGVVPAGWVAAGLETPCTLHFPLVPPQGLLLVSQGFTASKSGNAAVLEPKHLSEVGGTVTQYVGGPRLLCKGRL----QALMGEDDVKEAEAFRDAKILPRIASSWMEINAXXXXXXXXXXXXXXXXSGQDWLAWARENNSLRPGAETDALLEAVQSYVGASQERQDAEATKEAFYRTRAFERESALLKECLPKGFVTAVISRFNMLPGNKVMAVEKALVIRMRQDSCQVTXXXXXXXXXXXXXTDPALPRLATIDQLLAAVERIGLETIAAEG 2014
            + KRKVA+V GY+GT + GLQ+  N  V+T+E ++  A+F AG ++ESN+ DL KI W+R+SR              TDKGVHA   V   KLL+D+       +G    LK A+NA LP ++RVFS  +V K F  R  C  R+YEY++P S L              D+A A+F   LR +EG H FHNF   +    +   K+   K + A+ RR+    A +DD          G  D++ D   +S   D                          EE  +  DE E               + R ++     SIY       P   G   EP LR+++ GQ+FL NQ      IR MVG ALA A   +      A L T   +  P+ P +GL+L+S  F                     TV+ Y     +L K R     + L+   + +E   FRD  I   IASSW                       + +L    E+N      E  A+L  +     A++ +  A   +     T  + R+ ALL    PK F T +  R+ + PG     + + +++ ++                        +P  A  + ++A ++  G E +A EG
Sbjct:   47 LVKRKVAIVTGYMGTGYHGLQL--NDNVKTIEDDIRNAIFQAGAMRESNFEDLGKIDWARSSR--------------TDKGVHAGCIVFSGKLLIDEENKVDPISGRVHELKEALNASLPENIRVFSCTRVSKRFSARKNCVLREYEYFMPLSFLRGSLIGSDGEDFDTDEAVAEFCRALRRYEGVHDFHNFTRSRSYFYKVQAKK---KHYKAHYRRS---VAESDD---------AGVEDNDEDAEEESGIDDYS------------------------EESSQFEDEEE---------------LTRKLLPRHRRSIYSCSGSLVPDFCG---EPHLRIHIVGQAFLLNQ------IRCMVGGALAVATKGMSRVEFDAALLTNRIVRVPIAPAEGLVLLSSSFGGKSH----------------TVSLYEDPNTVLAKERKDVVHRVLLNRKEDEEMTKFRDEVIYKEIASSW--------------DMDEKMDRWRAYLERCYESNGRLDEDELSAVLFELDQAKLATKNKNQAFVEQNRSGLTE-YGRKGALL----PKQFTTKMCVRYGVAPGIFTSDLRRGIILHLKTGK---------------------IPLDADDEHIMAHIDSYGPENLAKEG 556
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BLAST of jgi.p|Trimin1|347247 vs. uniprot
Match: A0A0W8CPX1_PHYNI (PseudoU_synth_1 domain-containing protein n=1 Tax=Phytophthora nicotianae TaxID=4790 RepID=A0A0W8CPX1_PHYNI)

HSP 1 Score: 172 bits (437), Expect = 3.180e-41
Identity = 174/581 (29.95%), Postives = 245/581 (42.17%), Query Frame = 2 
Query:  134 VAKRKVALVLGYVGTDFSGLQIDRNSGVRTVESEMETALFNAGVIKESNYGDLSKIGWSRTSRIPLDGFVNIAYASRTDKGVHAAKTVVVAKLLVDQTQFC--AAGLNAPLKAAINACLPPDLRVFSVCKVPKGFRGRGECSWRDYEYYLPASLLTD------------DKATAKFGELLRLFEGTHSFHNFISMKGRELRQTRKEVTLKKWAAYDRRNRTAAAAADDQSDHVPEASVGQSDDNADVVSQSEASDXXXXXXXXXXXXXXXXXXXXASNEPVEEVQEEGDEGEGAAAGGEGAAGGEGVVMRNIMKEMTSSIYRMELEGAPLSVGGSPEPFLRVNVRGQSFLYNQSFLYDQIRLMVGAALAEANGVVPAGWVAAGLETPCTLHFPLVPPQGLLLVSQGFTASKSGNAAVLEPKHLSEVGGTVTQYVGGPRLLCKGRL----QALMGEDDVKEAEAFRDAKILPRIASSW-MEINAXXXXXXXXXXXXXXXXSGQDWLAWARENNSLRPGAETDALLEAVQSYVGASQERQDAEATKEAFYRTRAFERESALLKECLPKGFVTAVISRFNMLPG 1819
            + KRKVA+V GY+GT + GLQ+  N  V+T+E ++  A+F+AG ++ESN+ DL KI W+R+SR              TDKGVHA   V   KLL+D+       +G    LK A+NA LP ++RVFS  +V K F  R  C  R+YEY++P S L D            D+A A+F   LR +EG H FHNF   +    +   K    K + A  +RN     AA+D+SD V         D  DV  +S   D                         V++  EE  + E            E  + R ++     SIY       P   G   EP LRV++ GQ+FL NQ      IR MVG ALA A   +      A L T   +  P+ P +GL+L+S  F                     TV+ Y      L K R     + L+   + +E   FR+  I   I+ SW ME                     + +L    E N      E  A+L  +     A++ +  A   +  F  T    +    L   LPK F T +  R+++ PG
Sbjct:   51 LVKRKVAIVTGYMGTGYHGLQL--NDNVKTIEDDVRQAIFDAGAMRESNFVDLGKIDWARSSR--------------TDKGVHAGCIVFSGKLLIDEENKMDPVSGRVYGLKEALNASLPDNIRVFSCTRVSKRFSARKNCVLREYEYFMPLSFLKDSLVGSDGEDFDTDEAVAEFCRALRRYEGVHDFHNFTRSRSYFYKMQAKR---KHYRANYQRN-----AAEDESDDV---------DAEDVEDESAEVDSV-----------------------VDDYSEESSQFED-----------EEELTRKLLLRHRRSIYSCSGTLVPDFCG---EPHLRVHIVGQAFLLNQ------IRCMVGGALAVATKGMSRVEFDAALLTNRIVRVPIAPAEGLVLLSSSFGGKSH----------------TVSLYEDPNTELAKERKDVVHRVLLNRKEDEEMRQFREEVIYKEISRSWDMEEKMDRW---------------RAYLERCYEANERLNQDELSAVLYEMDQAKLATKNKNQAHVEQNRFELTEYGRKSVGAL---LPKQFATKLCVRYSVAPG 521
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BLAST of jgi.p|Trimin1|347247 vs. uniprot
Match: A0A835YQ93_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YQ93_9STRA)

HSP 1 Score: 290 bits (741), Expect = 9.610e-95
Identity = 276/276 (100.00%), Postives = 276/276 (100.00%), Query Frame = 1 
Query:    1 MNLPTIHMPPLAAAAAAPASAAPDIWARIFALVGPAHFLQVAAVCRDWRAGYAAAHARHITATSRRAVTASATLLRWAFACGCPADSTTLAAAVARGALDVLQXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCSGRARTGRRGMSRYTCANAAKGGFLDILKWAQPNGAPWNAAQCVSMAATAEVQMWILSNAGMLVAP 828
            MNLPTIHMPPLAAAAAAPASAAPDIWARIFALVGPAHFLQVAAVCRDWRAGYAAAHARHITATSRRAVTASATLLRWAFACGCPADSTTLAAAVARGALDVLQXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCSGRARTGRRGMSRYTCANAAKGGFLDILKWAQPNGAPWNAAQCVSMAATAEVQMWILSNAGMLVAP
Sbjct:    1 MNLPTIHMPPLAAAAAAPASAAPDIWARIFALVGPAHFLQVAAVCRDWRAGYAAAHARHITATSRRAVTASATLLRWAFACGCPADSTTLAAAVARGALDVLQXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCSGRARTGRRGMSRYTCANAAKGGFLDILKWAQPNGAPWNAAQCVSMAATAEVQMWILSNAGMLVAP 276
The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|347247 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A835YLA7_9STRA0.000e+0100.00Pseudouridine synthase n=1 Tax=Tribonema minus Tax... [more]
D8LDS4_ECTSI7.410e-9232.98Pseudouridylate synthase, putative n=1 Tax=Ectocar... [more]
A0A6H5L6M3_9PHAE2.330e-5933.38Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A024U417_9STRA3.790e-4530.03tRNA pseudouridine(38-40) synthase n=1 Tax=Aphanom... [more]
A0A329S330_9STRA1.450e-4329.90PseudoU_synth_1 domain-containing protein n=3 Tax=... [more]
A0A6A3ZI15_9STRA3.880e-4332.70PseudoU_synth_1 domain-containing protein n=5 Tax=... [more]
V9E711_PHYPR4.890e-4229.95tRNA pseudouridine(38-40) synthase n=7 Tax=Phytoph... [more]
W7U6V3_9STRA5.320e-4229.28Pseudouridylate synthase n=2 Tax=Monodopsidaceae T... [more]
A0A833SRU5_PHYIN5.780e-4227.75tRNA pseudouridine synthase n=1 Tax=Phytophthora i... [more]
A0A0W8CPX1_PHYNI3.180e-4129.95PseudoU_synth_1 domain-containing protein n=1 Tax=... [more]

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BLAST of jgi.p|Trimin1|347247 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A835YQ93_9STRA9.610e-95100.00Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Contig_9contigContig_9:1390717..1405775 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Tribonema minus UTEX_B_31562021-06-17
Properties
Property NameValue
ProteomeIdTrimin1|347247|estExt_Genemark1.C_Ctg_90145
BRITEko00000,ko00001,ko00002,ko01000,ko01002,ko03016
KEGG ModuleM00400,M00403
KEGG Pathwayko04141,ko04624,map04141,map04624
KEGG koko:K06173,ko:K14016,ko:K20674
EC5.4.99.12
GOsGO:0000049,GO:0000959,GO:0000963,GO:0001522,GO:0002153,GO:0003674,GO:0003676,GO:0003712,GO:0003713,GO:0003723,GO:0003727,GO:0003824,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005667,GO:0005730,GO:0005737,GO:0005739,GO:0005759,GO:0006139,GO:0006355,GO:0006357,GO:0006396,GO:0006399,GO:0006400,GO:0006725,GO:0006807,GO:0008033,GO:0008150,GO:0008152,GO:0009451,GO:0009889,GO:0009891,GO:0009893,GO:0009982,GO:0009987,GO:0010467,GO:0010468,GO:0010556,GO:0010557,GO:0010604,GO:0010628,GO:0016070,GO:0016071,GO:0016556,GO:0016853,GO:0016866,GO:0019219,GO:0019222,GO:0030374,GO:0031119,GO:0031323,GO:0031325,GO:0031326,GO:0031328,GO:0031974,GO:0031981,GO:0032991,GO:0034470,GO:0034641,GO:0034660,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043412,GO:0044237,GO:0044238,GO:0044422,GO:0044424,GO:0044428,GO:0044429,GO:0044444,GO:0044446,GO:0044464,GO:0045893,GO:0045935,GO:0045944,GO:0046483,GO:0048518,GO:0048522,GO:0050789,GO:0050794,GO:0051171,GO:0051173,GO:0051252,GO:0051254,GO:0060255,GO:0065007,GO:0070013,GO:0070525,GO:0070900,GO:0070902,GO:0071704,GO:0080090,GO:0090304,GO:0090646,GO:0097159,GO:0106029,GO:0140053,GO:0140098,GO:0140101,GO:0140110,GO:1900864,GO:1901360,GO:1901363,GO:1902680,GO:1903506,GO:1903508,GO:1990481,GO:2000112,GO:2001141
Preferred namePUS1
Descriptionpseudouridine synthase activity
COG categoryJ
Max annot lvl2759|Eukaryota
EggNOG OGsCOG0101@1|root,KOG2553@2759|Eukaryota
Evalue1.83e-94
Seed ortholog2880.D8LDS4
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionPseudouridine synthase I, TruA, alpha/beta domain
Ec32 orthologEc-08_003150.1
TranscriptId347569
TrackFilteredModels1
ProteinId347247
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|347247gene_3635Tribonema minus UTEX_B_3156 geneContig_9 1390717..1405775 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|347247Trimin1|347247|estExt_Genemark1.C_Ctg_90145Tribonema minus UTEX_B_3156 polypeptideContig_9 1390814..1405303 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
exon_3635_1exon_3635_1Tribonema minus UTEX_B_3156 exonContig_9 1390717..1390835 +
exon_3635_2exon_3635_2Tribonema minus UTEX_B_3156 exonContig_9 1391337..1391538 +
exon_3635_3exon_3635_3Tribonema minus UTEX_B_3156 exonContig_9 1392379..1392420 +
exon_3635_4exon_3635_4Tribonema minus UTEX_B_3156 exonContig_9 1392764..1392917 +
exon_3635_5exon_3635_5Tribonema minus UTEX_B_3156 exonContig_9 1393808..1393886 +
exon_3635_6exon_3635_6Tribonema minus UTEX_B_3156 exonContig_9 1394900..1395012 +
exon_3635_7exon_3635_7Tribonema minus UTEX_B_3156 exonContig_9 1396389..1396829 +
exon_3635_8exon_3635_8Tribonema minus UTEX_B_3156 exonContig_9 1397312..1397329 +
exon_3635_9exon_3635_9Tribonema minus UTEX_B_3156 exonContig_9 1397703..1397862 +
exon_3635_10exon_3635_10Tribonema minus UTEX_B_3156 exonContig_9 1398862..1398899 +
exon_3635_11exon_3635_11Tribonema minus UTEX_B_3156 exonContig_9 1400241..1400396 +
exon_3635_12exon_3635_12Tribonema minus UTEX_B_3156 exonContig_9 1400874..1400924 +
exon_3635_13exon_3635_13Tribonema minus UTEX_B_3156 exonContig_9 1401518..1401581 +
exon_3635_14exon_3635_14Tribonema minus UTEX_B_3156 exonContig_9 1402582..1402641 +
exon_3635_15exon_3635_15Tribonema minus UTEX_B_3156 exonContig_9 1403469..1403530 +
exon_3635_16exon_3635_16Tribonema minus UTEX_B_3156 exonContig_9 1404346..1404411 +
exon_3635_17exon_3635_17Tribonema minus UTEX_B_3156 exonContig_9 1404915..1404968 +
exon_3635_18exon_3635_18Tribonema minus UTEX_B_3156 exonContig_9 1405136..1405775 +


The following five_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
UTR5_3635UTR5_3635Tribonema minus UTEX_B_3156 five_prime_UTRContig_9 1390717..1390813 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
CDS_3635CDS_3635Tribonema minus UTEX_B_3156 CDSContig_9 1390814..1390835 +


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
UTR3_3635UTR3_3635Tribonema minus UTEX_B_3156 three_prime_UTRContig_9 1405304..1405775 +


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>mRNA_3635 ID=mRNA_3635|Name=jgi.p|Trimin1|347247|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=2519bp|location=Sequence derived from alignment at Contig_9:1390717..1405775+ (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon.  
GCTGTCTATGTAGCACAAACAACTGCACTTCTGAGCGTTCATCAGTGGGA
GCGTCACCATCTTGGTTGACCACAGACATCATCAGGGATTCCTGGGCATG
GTGCCAACATCCGCGGGTGAGGAGAAGGGGGGCGTCGCCAAGCGCAAGGT
GGCGCTGGTCCTGGGGTACGTGGGCACGGACTTCAGCGGCCTGCAGATAG
ACAGGAACTCAGGCGTGAGGACGGTGGAGAGCGAGATGGAGACGGCGCTA
TTCAACGCCGGCGTCATTAAGGAATCGAACTACGGCGATCTGAGTAAAAT
TGGGTGGAGCCGGACGAGCCGCATCCCGCTGGACGGCTTTGTCAACATTG
CGTACGCCTCAAGGACAGACAAGGGCGTCCACGCCGCAAAGACGGTTGTC
GTCGCCAAGCTGCTGGTTGACCAGACGCAGTTCTGCGCAGCGGGCCTCAA
CGCGCCGCTCAAGGCGGCGATCAACGCGTGCCTGCCGCCGGACCTGCGCG
TCTTCAGCGTCTGCAAGGTCCCCAAGGGGTTCCGCGGGCGCGGAGAGTGC
TCGTGGCGCGACTATGAGTATTACCTGCCGGCGTCACTGCTCACAGATGA
CAAAGCGACAGCCAAGTTCGGCGAGCTGCTGCGGCTCTTTGAGGGGACGC
ACAGCTTCCACAACTTCATCAGCATGAAGGGTCGCGAGCTGCGGCAGACC
AGAAAGGAGGTCACGCTGAAAAAGTGGGCAGCGTACGACCGCCGAAACCG
CACAGCCGCCGCCGCCGCCGACGACCAATCCGATCATGTGCCTGAAGCTT
CCGTCGGCCAATCAGACGACAACGCTGATGTCGTCAGCCAATCAGAAGCG
TCAGATGCTCCCGTCGGCCAGTCAGACGCCGCCGCTGATGCCGTGAGCCA
ATCAGAAGCGTCGGACGCGTCGAACGAGCCAGTCGAGGAGGTTCAGGAGG
AGGGGGACGAGGGGGAAGGTGCGGCGGCGGGGGGGGAGGGGGCAGCGGGC
GGGGAGGGGGTCGTGATGCGCAACATCATGAAGGAGATGACCAGCAGCAT
TTACAGGATGGAGTTGGAGGGGGCTCCGCTTAGTGTGGGGGGGTCGCCGG
AGCCGTTCTTACGCGTGAATGTGCGCGGCCAGAGCTTCCTCTACAACCAG
AGCTTCCTCTACGACCAGATCCGCCTGATGGTCGGCGCGGCTCTCGCAGA
GGCCAATGGCGTGGTGCCAGCGGGGTGGGTAGCGGCAGGGCTGGAGACCC
CCTGCACGCTCCACTTCCCCCTGGTCCCTCCGCAGGGGCTGCTGCTCGTG
TCGCAGGGGTTCACCGCCAGCAAATCAGGCAACGCTGCCGTGTTGGAGCC
GAAGCATCTTTCCGAGGTCGGCGGAACCGTCACGCAGTACGTGGGCGGCC
CACGCCTGCTGTGCAAGGGGCGCTTGCAGGCGCTCATGGGGGAAGACGAC
GTGAAGGAAGCGGAGGCGTTCCGCGACGCGAAAATACTGCCGCGCATTGC
ATCATCATGGATGGAGATAAATGCGGAGGCATTTCGCGACACGCACATAC
TGGCGCGCATCGCCTGCTCGTGGAGCGGGCAGGACTGGCTGGCGTGGGCC
CGCGAGAACAACTCGTTGCGGCCGGGAGCTGAGACAGATGCGCTGCTTGA
GGCGGTGCAATCATACGTGGGGGCGTCGCAGGAGCGGCAGGACGCTGAGG
CAACCAAGGAGGCCTTCTACAGGACGCGCGCGTTTGAGCGCGAGAGCGCT
TTGCTTAAGGAGTGCCTGCCGAAGGGCTTTGTGACAGCGGTCATATCGCG
CTTCAACATGCTGCCCGGCAACAAGGTGATGGCCGTGGAGAAAGCGCTCG
TGATCCGCATGAGGCAGGATAGCTGCCAGGTGACGGCGGTGCAGAAAGCG
CTGGTGAGCCGCATGAAGCAAGACACCGACCCCGCTCTGCCGCGCCTGGC
AACAATCGACCAGCTGCTCGCTGCCGTAGAGCGCATCGGACTCGAAACCA
TCGCCGCAGAGGGCGGCTTTCAGCCCGGCGTGGCGGCGCAGGCGTAGCAT
GAGCGCTCAGCAACCGTTTTTGCCGGGCCACTCACCGCCACGCCATAATA
TTTGAGGCGGCAGAAGCATGGAGCGGCAGCAGCATGGCCTAAAATTTAGC
AGCAGCTGGGTGGCGGTGTCGGGAAGTGGAGGTTTTGGGCGCTGCGGCGC
TGTTGCTGTTGAGCGCTGCCACTTTGTACTTCCAGTTGATGTTCACAAGC
GCAGCGTTCATACGGTAGCACTACGTAGTACTGCTGCTGGAAATTCGGCA
GCGCGCTACAGGATGCCTATGCCGCCGCGTGCCGCATTGTAGCAGGTACA
ACGCGGCTATCAGCAGTTGCAATGATCTTCATCTCTGGGTCCTGAACAGA
TGAGCCTGTGCAGAAAATGGCACACGTCTGTGATCACAGGAGGCGCATCA
ACCGTTGCGCGTGTTACAGCATCACATGTTTAAATCAATACACGGTCTGG
AGTGCTGCTGGTGTCAAAG
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protein sequence of jgi.p|Trimin1|347247

>Trimin1|347247|estExt_Genemark1.C_Ctg_90145 ID=Trimin1|347247|estExt_Genemark1.C_Ctg_90145|Name=jgi.p|Trimin1|347247|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=650bp
MVPTSAGEEKGGVAKRKVALVLGYVGTDFSGLQIDRNSGVRTVESEMETA
LFNAGVIKESNYGDLSKIGWSRTSRIPLDGFVNIAYASRTDKGVHAAKTV
VVAKLLVDQTQFCAAGLNAPLKAAINACLPPDLRVFSVCKVPKGFRGRGE
CSWRDYEYYLPASLLTDDKATAKFGELLRLFEGTHSFHNFISMKGRELRQ
TRKEVTLKKWAAYDRRNRTAAAAADDQSDHVPEASVGQSDDNADVVSQSE
ASDAPVGQSDAAADAVSQSEASDASNEPVEEVQEEGDEGEGAAAGGEGAA
GGEGVVMRNIMKEMTSSIYRMELEGAPLSVGGSPEPFLRVNVRGQSFLYN
QSFLYDQIRLMVGAALAEANGVVPAGWVAAGLETPCTLHFPLVPPQGLLL
VSQGFTASKSGNAAVLEPKHLSEVGGTVTQYVGGPRLLCKGRLQALMGED
DVKEAEAFRDAKILPRIASSWMEINAEAFRDTHILARIACSWSGQDWLAW
ARENNSLRPGAETDALLEAVQSYVGASQERQDAEATKEAFYRTRAFERES
ALLKECLPKGFVTAVISRFNMLPGNKVMAVEKALVIRMRQDSCQVTAVQK
ALVSRMKQDTDPALPRLATIDQLLAAVERIGLETIAAEGGFQPGVAAQA*
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mRNA from alignment at Contig_9:1390717..1405775+

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_3635 ID=mRNA_3635|Name=jgi.p|Trimin1|347247|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=15059bp|location=Sequence derived from alignment at Contig_9:1390717..1405775+ (Tribonema minus UTEX_B_3156 )
GCTGTCTATGTAGCACAAACAACTGCACTTCTGAGCGTTCATCAGTGGGA
GCGTCACCATCTTGGTTGACCACAGACATCATCAGGGATTCCTGGGCATG
GTGCCAACATCCGCGGGTGGTGCCGCAACGTCGCTTGCGTTCGCCCCAGC
AGTTTTTCAACCGTTGTATTTGCAAGCTTGCAACCAGAACGGCATCGCTG
TTCTGATGGCATGTAGAATAGGACAGGTGCTACTGCGACGACCACACAGA
GGCTACAACAGCGGCGGAGGCAGGATGCGAGTGCGTGTATATAGCACAGG
CGAGCAAGCGTCTTCTGTCATCAACGAGCTCGATGTGGAAGAGCACAAAG
GTACAAGCCACAAACGCGAACTTCACCCAAACTTCACCGCGTCCAGAGTC
GTACACAGCAAAAAGAGCTTTCTGTAGTACGTGTTTCGCTTGCGTGTTTT
GTCAACTTTTTTTGTTCCATTGGCACAGAAAAGGCACCGAGGTCCGCCCC
GCCCACCGTTGGGCCACTTCAAGCCGATACCACAGGCAGGCCACCATTGC
TTTCAAGCTACAAGCGCTTGCTCTGACGCCCCCCTGTCGGTCATCCCCCG
CTAAAACCGCTGCCGCGCAGAGGAGAAGGGGGGCGTCGCCAAGCGCAAGG
TGGCGCTGGTCCTGGGGTACGTGGGCACGGACTTCAGCGGCCTGCAGATA
GACAGGAACTCAGGCGTGAGGACGGTGGAGAGCGAGATGGAGACGGCGCT
ATTCAACGCCGGCGTCATTAAGGAATCGAACTACGGCGATCTGAGTAAAA
TTGGGTGGAGCCGGACGAGCCGGTGAGAGCCCGCACAGTGGGTGCATTTT
GTACTTCTTATTGATTCGCGCTCAGGGCGCGAAAAAGCCCCAGATGAATG
GTATCTAAGCTTGCTGTCCGGAATGAACATGTCGTGTGACAGTCTGAAAG
TGTCTCAATGACAACCACTCAAACGACGCCGCCACGAAATGGCACAGTGG
GTACGGTGGCGATGCTGCAGTAGTGCAAGTCAGTCTGGTCAAACAGTCAG
CACGATGCATTTGCTGGAATGCCTTAGGGGCCTACAATGACCGGAGCAAA
ACCGCGTGAAGCCGGACGAGCCAATGCAGGGTTACTTCCCTAACCCATAG
CACCAACCTAGTACTCCATGCACTCAGCGCTTGAATTTAATTAAACTGGC
CTCAACACCGCATTCCATTGGCAGAGTCGTGCGTAGCAGGAGGAGCTGGT
TAGAGCGGCTTCCGTGCTCACGACACCAGCAGTGCACATCCCTCATGCTG
CACACCGGACGTACTCAAAATTGGCTCCTGGCTGTTGTTGCTGGGGTGCT
TGCTTGGCTTGGGGCATCTTGAGCAAAGCTGCGTGGAGTCGCCGAAGGAG
TCAGTGGAGCTTGGGCGCCAACAGCAGCAGCAGAGTGCTCAACTTCTCCG
CTCCAGCCATCTGCTGAATCTAGTTGATGCAGTATGAGACTGCCTTCGCC
AAAAGTTTTCCTTACGGGTGGCGAGCCTGTTGTACCGTCGCAAAATGCAG
TCTCGGCAATCCGTGTTGGTGTGTTGCCAATGCCAACGGCTGCGGCATCC
TCACCGAACGGCAACTGACGCGTGCCGCACCAATCAGCAGCCTTGTACGT
CATAATGCGCAGCATCCCGCTGGACGGCTTTGTCAACATTGCGTACGCCT
CAAGGTCTGCAAACTTCAAAACCTGTACACCCCACCTCAAGATCTGCAGA
CTTCAAAACCTGTACACCCTACTTCAGCCCGTGCGTGCGCATACGCTTTG
TCTGACGGCAATCAGGAAGGCAAAGGTCAAGGCGATCATTGCACCTTCGC
CGTTGTCGCGAAGCTGCTGGTGAAGCAGACCCAGTAGCGCCGCCACCAGG
ACCAGCAGCACGTACCTCAAAGAGTTACACCTTCAGCCCCCCCCCCCCCC
AACAAAAAATTCCCGCACCCAGCGCATACGTCACGAACCTCCCATGATCG
TACGTCAAACTCCAACACGAACGCCCTTGCGTTTTACCCGCTATCAGGAC
AGACAAGGGCGTCCACGCCGCAAAGACGGTTGTCGTCGCCAAGCTGCTGG
TTGACCAGACGCAGTTCTGCGCAGCGGGCCTCAACGCGCCGCTCAAGGCG
GCGATCAACGCGTGCCTGCCGCCGGACCTGCGCGTCTTCAGCGTCTGCAA
GGTACTTCAAGTCGTGACATGGCCGTTGCAACTTCAACAGTGATGTTCTG
CACAGTTGACCTGTTCTGCACAGCCGACCTTCGCGTCATCACGCATCTGT
GCGCTGTGCCAAACTTCAAGTGTGACTTCCGCGAACTTTCACTTCAAGGT
GGGTGGCACGAGGACGTGGCGTTGAAACTTCAATGTTGATGTTCTGCACA
GCCACCTCGACCGCGGACCTATGCACGTGGACGCAGCGCACCTATGTGTA
GGGCTGCAGCGTGTGTGCGCAATGCTAACTCTAAACCCAGCCCTAACCCT
TGGAGAGGAATGCGCGCACACGCCTGTTAGCTGCAGCAAAGTGCATGTGC
ATACGCATGCATATTTCAGCACGTATACATTCCCAGCAGGCATTCATGCA
TACCCCGGAACGCGAACCTGCCTGCAGCGGCACATGGCATGAGCTATGAG
TTGGCGCCCGCATGCAGCCGCGCTGCACAGCTTCGCATCGTTTTGAGGCG
CTCTTGCGAGCCGCGATGCCACGGGCTTTTGCCGCAGGTCATGCCGGCGG
CAGCTTTCACGAGCGCAGCAGCCGCCAACGCTGCTGGTACGACCGGCTAG
GGTTAGTAGTAGGTAACCCTAACCCCAACCCTAGGGTTAGGTAACATCCA
CCCTAAGCCTAAACCTAACCCTGATTCACGCTGCTGGTGCGGAAATGGCA
TCCCCACCCCATCCCCACCCGCAGATCGATAGTTCAAGCTTGCGGTCAGC
GCCGGGATGCTGCTGAGCATTCAGCTATAGAGAAGCAATTGCCTCTAAGC
GCAGTAGGGAGCGATGTGGCCGACGCGCTTACTTGCGCTAACCCTAACCC
TAACCCTACACTGCTTCCTGCGCGTTGTCTGCCGTGGCCAGGTCCCCAAG
GGGTTCCGCGGGCGCGGAGAGTGCTCGTGGCGCGACTATGAGTATTACCT
GCCGGCGTCACTGCTCACAGGTATGTATGTGATAATGCATTGTACGGTAC
ATACCACTTTGTGGCGAGGACTACCTGCCCGCGTCACTGCTTGCAGGTAT
GTATATATCAAAGCTCAACATGTAGGTACTCATTATCAGTCATACCACTT
TGTGGCGCGACTATGAGTACTTCCTGCCCACGTCACTGCCCACAGATATG
TATATACATATGAAAGCTATGTACGTAGGTATTCGCTATGATTCATACCA
CTTTGTGGCATTGCGTGCGCATTGCAGCCGGTGCCGTTGAGGCGCCATTG
CAATTGGTGACGTGCCAATTTTTGACAGCAAAACGCACATTTCAAAACTC
ATGTCTCACCATGTCTCCCGGTACGCCTGCACATGGCTGCGTGGGATGGG
CATCTGAGATAGCTTGCAAGACATGCAGTGCGCCTCGATCTGCTGAGCAC
TGGGGGCATTGTGTCCTTAAGCCACTGCTAACTTCTCTGCATCGTTGATT
GAATATATATAATATATATGTATATATTGTGCATCTAATTTTTACCCACA
ACTGCTGCTACTACTGTTACCAATGCCACAACTCCCACTTCTGCCACTAC
ACTACACATCAAACCACAACACGGTACGGCACGTTGTGGGATTTTTTCCC
AGTCGCAATGATCGGCTACTACATCGCTGCACCGTCTTGACAATAGAGCC
ACTGCGCTGGGAAGGCGGTGGCCGCTTCGGTTAGGGTTAGGGGTAGGCAC
CAAGGTTAGGGTTAGGGGTAGAGTTAGCACCAAAAATCGCGTTGTCTGAT
CGATCTGAGCGCTGTCTTTTTCGCTCTGCGCCCTGCTCTACCACCATGCT
GCCATGCATTGCTTTCTGGGTCAGGTGTGCGCATATTCACGCATGCTCAA
TTTTGCATGCTCGTTTTTGTGGTACCGGTACAGGCGCGTCCGCCACTGTG
CACATTTGATCACGCTCATCAACAGCATCTCCTGTGCGCGCTTGTCTGTC
ATTCACAAACCCGATCTGCAATGCGGCCGGCAGATGACAAAGCGACAGCC
AAGTTCGGCGAGCTGCTGCGGCTCTTTGAGGGGACGCACAGCTTCCACAA
CTTCATCAGCATGAAGGGTCGCGAGCTGCGGCAGACCAGAAAGGAGGTGC
GCTTATTAGCGTCGATGGCGCGTGGTGCTGCGATGCAACAGCTTGTTGTC
GTTTATGTAGCTGTTGCATCAGAGCCTCATGCCAGAAAGCCGGTGTGCTG
CCTGGTGCGTGCGCAAACGCGGTGTCGCGCGATGCTGTGACGCGGCGGGT
GGCCGCATATCGTAGGCCATCATGTATCGCGTAGCATTAGACTAGGGTTT
TGTACCAGAAAGCAGGTGCGCATCAAGGTTTGGTACCAGAAAGCAGGTGC
GCTACTTGAGCGTCTGCGCAATCATTGGGGTGCGTTATGCTGTGATGCAA
CGGGTTGCCGCAGCTCGTTGGCAACTATGTATCCCGTAGCATTAGGGCTT
GTTGTCAGGAAGCAGGCGCGCTACTTAGAGCGTCTGCGCAAACGCGGTGG
CGCGCGATGCTGTGACGCAGCAGGCCATTGCGGCTCAATGGCATCTGTGT
ATGGCGTCCAGAACGATAGATTCCGGCCCTAGCATTAGGGCTTGTTACCG
AAAAACAAGTGCTGTGCGACCACGGGGCGCATGATGCTGTAGCCGCAACG
CTGTGCGCTGCCGTGTTTGGCAGACGCAGCTTGTTGCTGTCCTTGTGAGG
GTTTCAGGCACTGCCAAAACTCGAACCCTGGACCGAGGGTTTGCTGCACC
ATCAAACTCTGACCCTAGACCTATAGGGTTTGGTGCCATGATTAGACGTG
ACGCCCTAGTTCCTTGCTCATCATCCCCCCCCCCTCCCCCCCATATACTG
TCCGTGTGTTCATGAGGTTCGCTTGCATCGGATTTGTGAAACACATATCG
CAACAATTCATGAACAGTTCATGCCGATGTTATGTCTGTGTCCATGTGAA
CCGGGAAGCAGCTGTGCGACATCCATCTCAGGATGCTTGACATAGAAGCA
TGTCGCACTTCAGACTTCGCGCCATTGGTATCAAAAAGTTGCTGGACCCA
TCTCTCGCAGTGCAATTACTGGTGCTTGCCGCTGGCAGCCACTCAGTCTT
TCCCGCACCTTTGGCGCATCGTTCTTTCACGGCAGCCATCCCAATCAGAC
ATTTCTGGGGGCAGGATCAGTCCATGGTTAACCTCAACTTCACTACAACC
ATGACCCTCAGCATTAGGTCTGGGCGAGGTTTAACCCTAATTGAGCAGCT
GATGACCCCTCAGCGTTGGGTCTCTTTGAGGGTTAACCCTAGCTCAGCAG
CTTATGACCCCTCACCATTAGGTCTGGGTGAGGTTTAATCGTATCTCAGC
AGCTTCATGCCCCCTTAGCATGAGGTCTGGGTGAGGTTTAGCCCTAACTC
AGCAACTCACCATTAGGTCTGGGTGAGATTTAACCCTTACCGAGCACCCG
CACGCTCTCGCTGTGTGGCCAGGTCACGCTGAAAAAGTGGGCAGCGTACG
ACCGCCGAAACCGCACAGCCGCCGCCGCCGCCGACGACCAATCCGATCAT
GTGCCTGAAGCTTCCGTCGGCCAATCAGACGACAACGCTGATGTCGTCAG
CCAATCAGAAGCGTCAGATGCTCCCGTCGGCCAGTCAGACGCCGCCGCTG
ATGCCGTGAGCCAATCAGAAGCGTCGGACGCGTCGAACGAGCCAGTCGAG
GAGGTTCAGGAGGAGGGGGACGAGGGGGAAGGTGCGGCGGCGGGGGGGGA
GGGGGCAGCGGGCGGGGAGGGGGTCGTGATGCGCAACATCATGAAGGAGA
TGACCAGCAGCATTTACAGGATGGAGTTGGAGGGGGCTCCGCTTAGTGTG
GGGGGGTCGCCGGAGCCGTTCTTACGCGTGAATGTGCGCGGCCAGAGCTT
CCTCTACAACCAGGTATGTATATATGTATGCGCACTGCGGGCAGCGCTGT
CAGCCACGTGTCAGTTTGCCAGTTCAGGTGTACTGCCAGTTCAGATGAAC
TCTCGTGTTCTGCTTGTCAAAAGCGCTGGCTCATCGGAGCCGTTCATTCG
CGTGAACATGCGCGGCGAGAGCTTCCTCTGCAACCAGGTGTGTGTGCGGA
TAAGCGCGGCAGTGCCAGCGTTCTTAGCCATCACGTATGGTCAGTTTGAC
ATGAGTGCCAGTTCAGGTGAACTCCTGTACTGCTTGTCCAAAGCGCTGGC
TCATCGGAGCCGTTCATACGCGTGAATGTGCGCGGCCAGAGCTTCCTCTT
GGAATCCTCTACAATCAGGTTTGCAAACGCATGCGCACTGCAGGCAGCGC
TGTCAGCCACGTGTGCTACCAGATCAGATGTACTGCTGTTCTGCTTGTGA
AAGGGGGCACCGCAGCCATTTTCACGTGTAAACGTGTGCGGACAGAGCTT
CCTCTACGACCAGGTATGTATACGTATGCGCTTCCGCCGCTGCAGATCCG
CCTGGCAGTCGGCACAGCTTGAGCTTCGCTCCAACATAATGTCATCTGGG
CTGGCTTGCTGCTCATTTATGGGATCGTGAAGCGCTGCGATCCTATGCGC
TTTGGCGTGCGCCGCTGCCGCTGCCTGACGATCGGCATGGTTTGATGTTA
GGGTTAGACTTGCGGTTAGCAACGCTCCACCGATAGTCTCTCAGACAGCC
TGGCTTGCTAACAACAGTGCGCAACGCTGCCCCAGTGACTCTCAGACAGC
CTGGCTTGCCAATAACAGTCGTTCAACGCTGCCCCAGTGACCAGCTGTTC
ACCGTGATGCGCTGCGCACTGCCGCCGCCGCTGCAGATCCGCCTGATGGT
CGGCGCGGCTCTCGCAGAGGCCAATGGCGTGGTGCCAGCGGGGTGGGTAG
CGGCAGGGCTGGAGACCCCCTGCACGCTCCACTTCCCCCTGGTCCCTCCG
CAGGGGCTGCTGCTCGTGTCGCAGGGGTTCACCGCCAGCAAATCAGGTGA
ACTTCATATTTGAAGTGGTACGCTCTGTAATAATATTCGTTCCCATGCAG
AGGCTGCTGCTCGTGTCGCAGGGGTTTGCCCCGCTGGCAAAGCAGGTGTG
CGGCGCTGCTGAGAACTTCATATCTGAAGTTGTACGCTCCACTTTTGCTG
CTCGCCCTCCGCGTGGGCTGCTGCCTGTGTCGCGGAGGGGTTCACTGCCG
GCACACTGGAGATGCACCCATTTGCGGCAGTCCCCACCCAGTGTAAGGAT
TAGGTTTACGGTCTAAGCCTTTGCTCTCAGGAGTGGTGTGTTTGCTGGTC
TTGATCTCCAGCAAGTTGCTCAGCTGGTAGGGTTTTGCCCGCTGGCGGAT
CTGTCGATTGCCGAAACACCAAAGCATGGTCCACTGAAAAGTGTCATCTG
CCCAATGCAGTGTATTAGATCAGGAACAATGTGCATGCACAGCGGGGGGC
TCAAATTGGCAACTTCAATCGCGAGAGTACCTTGAAGGTGGAGGCTTCGC
ACCAACAGCCGCTCGCACCGACAAGGTGCCTTTTGTGTAATCATGCCAAT
GGTGCTACAGTGCTGGGGGTTTGCGATGATGTTGATAGGGTTGTCGTGTT
GGCGGAACCCCTCAACCCTCATCCTAACATTAACCCTAATGCAGCACAGT
GTCCTCACAATGACATCTCCTCACAGGTATCGTTACCATACATTTGGCGC
GACTGCAATGTTCCAGTCACAGATGACCTCTGCACATGCATGTGATTGAT
AACGCAAACTGCACCTCCCAAGCAACAGAGCACCAGAGAGAGTGGTGCAC
CATGCGTGCACTATGTTCTGTGGGGACATGAAGTGCAGCAGCAGCAGCAG
CAGCAGCAGTGCTCGGGATATCAACAACTTCACCTTGTGTTTTACTGTAG
ACATGTCACCTACTTGAATATGCACATCAGCTGCGTGTAAGCTCATGACA
GTATGCTCCGCATATCCACTGCCTATGCCTGCTGGTGCTCTTCAGGCAAC
GCTGCCGTGTTGGAGCCGAAGCATCTTTCCGAGGTATGCTCAGTTGGCGG
TACATGTGGAGTGCGTCTGCAGTACCGTTTGCTTGAAGTGTCAGGAAACC
GGCCGTGCACATCATTGAAGCGTCAACCACGCAATGTCTTTGCCACATAG
CTTTCAGGTTGTTCACGACTGCGCAGTCAGCGCACGGCCACAAATCTAGC
ATTGGATTGGTGGAAGGCACTTGAGGCTAACCACACGTTGTCACCTACGA
TCTTCTGGTTCGTTTCGATTGGACCTGTTGCACATCTTGCACAGGAGCAC
AAGAATTCTAGGCAGATGAAGGTCATGTGAGCACAGCAGTGCCTGCTTTT
TTTAAACAACTTGATCACGCCAGATGTATGTTACGCCAGATGGATGGTAA
TCGTTGCCCAGCGTCATTCAAGCATCATGAAATCACATACATAGATGTTT
GCCCACTGCGGAGCCATGTTCATGCGCCGTGAATTCGTGCTCATCCACCA
GGAATTCAATCACTTTTGCCAGGCCAGATCGGCGCACCATCTCCCACTGC
GGATCATGCCTGAGTCATAAAAAATCCACCGTGAATTGTGAGGCATCCAT
TCATTCACGCGTGCCGCGCCAGGTCGGCGACAATGTCGCCAACTGCGAAT
GGTCGTTCAGTCAACTTGAATCTACCGTTAATTCATGAGGCATTCATTCA
CTCACTCGTGCCACGCCAGGCCGGCGGCACCGTTCCCCACTGCAAACCCT
CGTTTGCCCACCATCAATTCACGTTCATTCATGAGGCATTCATTCATTCG
CTCGTGCCGCACCAGGTCGGCGGCACCGGCACCGGCACCAGCTGCGGATT
GTCATTCATTCATCATGAGTTTACTGGTTCCATGAGGCATTTATTCATTC
ACTCGTGCTGCGCCAGGTCAGCGGCACCGTCACGCACTGTGGATCGTCGT
TCACCCACCTGCTATGAATTCACATTCATCAATTATGAATTCTTTCACTT
GTGCCGTGCCAGGATGACGGCACCATCACGAATGCGGATCATCGTTCAGC
CACTGTAAATTCACGATCGATGACCATGAATTCATTCACTCGGGCCGCGC
CAGGTCGGTGGCACTGTCACGCACTGCGACTCGTCATTCACCCACCATGA
GTTGTCGCGTTTGTTGATCATGAACTCTTTCACTCCTGCCGTGCCAGTGC
AGCAGCACTGCCGCACATCCTGGTGGTCATTCACCCACCATGAGTCATGT
TCATTAACTATGAATTCATTCACTCATGCCGCGCCAGGTTGGCGGCACCG
TCATGCACTACGGAGCGGCATCCACCCACGATGAATTCACATTTGTTCAT
CATGAATTCATTCACTCGTGCCAGGTCGGCGGAACCGTCACGCAGTACGT
GGGCGGCCCACGCCTGCTGTGCAAGGGGCGCTTGCAGGCGCTCATGGGGG
AAGACGACGTGAAGGAAGCGGAGGCGTTCCGCGACGCGAAAATACTGCCG
CGCATTGCATCATCATGGATGGAGATAAATGTGAGTCGTGTAGTGCAGTG
TACGCTTTGCTGCCAGTAAAGTGCAGTTGAAGTAGTATTTGAAGTTTAAT
GTTTCAGCGCTCATGAGGGAAGACGACGTGAAGGAGGCGGAAGCATTTCG
CGACACGCACATACTGCCGCGCATTGCATCGTCATGGATTGACATTAACG
TCAGTGGAGTGTGCAGTGTTCATTGTGAATGAGTGTATGAATGAGTTAGT
GTCCACTGCGGGCAAAAATGCGGTTGATGGAGAAGTTGAAGTTTCTTGCC
GCAACGCTCACGTTGTAAGCTGACGTTGCGGGAACGGAGGCGTTCCGCGA
CGTGCACATACCGCGGCGCATCGCCTCGTCATGGATGGACATCAATGCGA
GTTGCGTGTAGTGCAGTGTCCGCTCTGATAAATGGACTGCCAGTATAGCA
CAGTTGAAGTAGTAACTGAAGTTTCTGATTTCAGCGCTCACGGTGCACGT
GGCGGAGGCGGAGGCATTTCGCGACACGCACATACTGGCGCGCATCGCCT
GCTCGTGGGTGGCATGAAAAATGCAAGTGTCGACCGGTCAAGTTGAAGTG
AAGTTGCAGACCAGGTCGCACGTAGTCTATACGCATACACATGCAGCGGG
TCGCGTCGTCGTTGTGCACAGATCTCAACGTGAACGTTAGCTAATATCTT
CCCCTTGAAGCATTTTATTCGCCTAGAAATGAGCAAGTCATATTTTCTTC
TATCATTTTTTTCCTTTTTTTTTGCCTCAAGACACTCATATGATATGGGT
AGGGCTCTGGAAGTGCTGTTAGTGTTTGCATCATTGACGCAGTACAACAA
AGTCATGATCTGACAGAGCTGCCGCTCATCGCCATGACAACATAACATTT
CCCCCTGCCACATGTCTACCAATTCAAAATCTGCTGCTGTTTTTGTTTTC
ATATATGCTTATGTTTGAGCACTCCTTGTGGGTACTGCGGACAGGACGCG
AGAAAGGGTTGCGCGAGACAACTCATAATTCATACGGCGCGAAAAAAACT
GCAAGTGATTTCACCAGTGACACAGTACAACAAAGTCATGATCTGCTGAA
ACTGTCGTTCATCGCCGTGCGCCGCATTCGCGCGCTGCGTTCGCTGCGCA
GAGCGGGCAGGACTGGCTGGCGTGGGCCCGCGAGAACAACTCGTTGCGGC
CGGGAGCTGAGACAGGTATGTGCAATGACAGGGTGTAGGCGTAGGGCTAG
GGTTAAGGCTGCGGCTAGCGGTAGGGCACACATTGCGACTGGGAGCTGAG
AGGTCGGCGCAAATAATACAAGGGAGCAGGAGTAGGGCTAGGGCTAGGGT
TGAGGCTTTAAATAGAGCTAAAACCAAAAGGGCAGGGGTAGGGCTACGTG
TAAGGCCAGGGTAGGGCTAGATCTAAGGGGGCAGGGGTAGGGCTACGTGT
AGGGCTAGGGTTGGGGCTAGTCATAGGGCTAGCACTGGGGGGTAGGGCTT
CGGGTAGGGCTAGAATTGGGGCTATTTTCTGGGCTACAACTAAGGCGGCA
GAGGTGCGCTAGGGCGAGGGCTAGGATTGGGGGGCTAGAATCAGCGTCAG
GCCGGGGAGCTGAGATGGGTCCGTGACGTGGCGTAGTTGGGATCGAAATT
GCTGTTTGGGCTAGGGCCAGGATTCATGCAATGTTAGGGTTGGTGTTAGG
GTTTGCGTGACACGTGCCATCTGAGCCCGTAGCATGACCTAACCCTGGCG
AGGAGGGGAGGAGGGGTAGGGTTAGGGTTTAGGCTAGGCCCGCACCGCAG
GCGTGATGCGTCGAAGTGTGAGGGGTAGGCTTAGGGTTGAAACTTGCGTG
TGCGCACCAGTTCGCTTAGAAGGGTCAGCGCAGAGGGCCAAGAAACCTAG
ATCATGTCGGGTCATGAGCTACCATGCTTGTTGAAAGATGAGTGCAGTCT
GCATCGGCTGCATGCACATATCTGAAGTAGTGCATGAACTGGTGAACTAG
GTAGCAGTGCACAAACCGCAGCACGCGAGCTGCCCGTACTCTGTGATGTC
GCTTCATGCGGGACACGAGCTCATCACATTCGGTCAGCAGATCACCAGCC
TGAATTGTGCTGCTTCGCTGCAGATGTGCAAGACTAATCATTTCAACGTG
CAGCTGTGGCTGAGTGACATTCTCCCTGGTGTTGCACACGTTGTTTGCGC
ATGTCTGGTTTCCAGATGCGCTGCTTGAGGCGGTGCAATCATACGTGGGG
GCGTCGCAGGAGCGGCAGGACGCTGGCAAGTCAACTTCAAGTCATTATTC
ACAACTTCAAGTCACTTTCAACAATGTCGTTCATCTTCAAATCCCAATCA
GCATTGTTGTAGGTCTTTGCATTTAAATCAGCATTGTCATAGACCTGTGC
TTACTCAGAGCCAGCCGGCCGTCCGGCACTCGCACGCTGTTGTGCTCATG
TGCAGCTGTTTACGCGGTACCCAGTGATTAGAACGCTCAAAACAATACGC
GATCGGGAACAGTAATGAAGCGCCAAAGAATGCGTTTCTTCACCAGACTG
AGCGTGATTGATGTGCGTTGACGCGTTTGCGCACAAGGCTATGCACTACA
ACTGGCAAGTGCTAGTGAGCAGAAACAGGCTCGCAGCCTGCAGCAGAGCC
CTTTTGCGTAAGCGTCTTGCTTTGAGTGCTCCTAAACAAATCACGCAGCC
CATGTGATTGTATTTGATTGGCTTACAAGGTCTCTGGCGTAAACATTCAG
CTCATCACACATCTTAGCCAAATTGTTTCAGTTCTCTGGCTTGGCGCATG
CCTGCGTGGCCTGCTGACAAGATTTTACGGGAAGTCGTGTGCCGAATCAA
TGGCACCACAGTGCAGAGCGCTTGTGGCAAAACGTGAAGAAGGACTGAGG
CGCTTCGCTGCGTGCAAATAGTTCACTTGAAAAACCTTCGCGAAGTGTAT
GCATATGGTATGCGCGCATGCGCATGCTTCTGGCGTGCCTTTCACAATGG
CTACTAACATAAGGCACCTTCCATCTGCTGTGATTTGCGCTGAGCCCCCC
CCTCCCATTCCACCCCCCTCACCCCTCCCGATGTTTCGTTTTCCCGCTGC
AGAGGCAACCAAGGAGGCCTTCTACAGGACGCGCGCGTTTGAGCGCGAGA
GCGCTTTGCTTAAGGTACATTCGTATGCGCTCCGTATCGCATGCAACTTG
CAATCATTGTTATTGTAAGGCAGCGTGGTGCTGACGGTTGTGTGGAGCTC
TGCTTGATAGGTCCACACGCAGAGTGACAGCGAGACACAGCTGGTGCTGA
GCACTGCTGACAGCGGTCAAGGTACGTATGTATGCGTTCCGTAGCGCGAA
TGCGCACTCTGCACTACAAAACGGCAGGTATGGCAAAGGCGCTCTGGGGG
GCTGCTGCCCAGTCATACCGCAGATGGCAAGAGTCAGTGCTGCGTCTCTG
CCGATTGTGGACAGATTACAAGTCACTAATTACTTTTTGTTGAACGAAAC
ACGCCGCTGCTTGATCTTGCAGCAGGACTGGGCTCGGGAGCATGCCTGTA
AAATGCATGGTCTGGAGTTCAACCCTGACCCTAATCCTAACTCTAGCCCT
AACCCTAAGTGGAGCAGCGCTCAAAACTGCGGAGGGTCTCTTGCGAGAAA
GCAGAAAAGTAGACTGGGGAGCATGCTCGCGAGGCGGGCCGATTGCAACG
ATTGCAATGCCTTTATACCCCCGCCCTCTGATGCCCACCGTAATTTTTTT
TTGCTTGCAAGCGTGTGCAACAGCAGTCAGTTTACGCGCCACGCAGCCCG
CCGGCTGCTCATGGTTCATCTGCCATGCACGTTGTGATATATGTGTACAT
GCCTGCCTGTTCCGTGCTCGCTTGCTCGCGCCGCTGCTATACGCTCGAAC
GTGCTTCTATTCTTCTGCGCAGATCAGCGCGCATTGAGACAATGTTGCTG
AGCACTGCTGCCTCACTGCCGCGCTGCAGGAGTGCCTGCCGAAGGGCTTT
GTGACAGCGGTCATATCGCGCTTCAACATGCTGCCCGGCAACAAGGTGAG
ACGGTCGTTGGCGGCTAGGGTTGAGCACTGACTTCAACCGTAGGTGCTGC
AATAAATATAATACTCAGGGAGTGCCTGCCGAAAGGCTTCGTAGCAGCGC
TCATATCGCGCTTCAACATGCTGCCCGGCAATAAGGTGAGACCGCTGTCG
GCGGCTAGGGTTGATCACTGACTTTGACAACAGGAGGTGCTGTACTAAAT
CTCAACAATTGCTGTGCACTCTGCGTCATCACAGTCAAAGTTTCGTTGTG
CCTCAAGCGCGCACTGATGCTCTCTTCACACGCCATCACGAGCCTGGGCA
TTGTCCTTTACACCAGCAAGCATGACAGTTGCTCATTGCTAGACATCGGA
TCGCATGTCACTTATGCCGACTCGTGCCCGCAGTGCCTGCTTTCCCCTGG
CATGTCTGAACCTGACGCCATGGCTCTGTGTGCGTGTGCATCATGTTTGC
CTGTGCGCGTGCCTAATCCTAACCTCACCCTTACCTTAATGCCCTCAGGT
GATGGCCGTGGAGAAAGCGCTCGTGATCCGCATGAGGCAGGATAGCTGCC
AGGTGCTTGAACCGCTCTCCCTTCCCCTGCCCTACAAGATGACAAGACGC
AATTGCTTCACAAACACAACACAGAAAAATTTGCCCGCCCCACCCTGCCC
GCTGTCGCCAACAAAATGGAACCTGAACATCATGCCTCTCTGTGCATGTG
CTCCTGCGCATTTCCTCAGGTGACGGCGGTGCAGAAAGCGCTGGTGAGCC
GCATGAAGCAAGACACCGACCCCGCTCTGCCGCGCCTGGCAACAATCGAC
CAGCTGCTCGCTGCCGTAGAGCGCATCGGACTCGAAACCATCGCCGCAGA
GGGCGGCTTTCAGCCCGGCGTGGCGGCGCAGGCGTAGCATGAGCGCTCAG
CAACCGTTTTTGCCGGGCCACTCACCGCCACGCCATAATATTTGAGGCGG
CAGAAGCATGGAGCGGCAGCAGCATGGCCTAAAATTTAGCAGCAGCTGGG
TGGCGGTGTCGGGAAGTGGAGGTTTTGGGCGCTGCGGCGCTGTTGCTGTT
GAGCGCTGCCACTTTGTACTTCCAGTTGATGTTCACAAGCGCAGCGTTCA
TACGGTAGCACTACGTAGTACTGCTGCTGGAAATTCGGCAGCGCGCTACA
GGATGCCTATGCCGCCGCGTGCCGCATTGTAGCAGGTACAACGCGGCTAT
CAGCAGTTGCAATGATCTTCATCTCTGGGTCCTGAACAGATGAGCCTGTG
CAGAAAATGGCACACGTCTGTGATCACAGGAGGCGCATCAACCGTTGCGC
GTGTTACAGCATCACATGTTTAAATCAATACACGGTCTGGAGTGCTGCTG
GTGTCAAAG
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Coding sequence (CDS) from alignment at Contig_9:1390717..1405775+

>mRNA_3635 ID=mRNA_3635|Name=jgi.p|Trimin1|347247|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=1950bp|location=Sequence derived from alignment at Contig_9:1390717..1405775+ (Tribonema minus UTEX_B_3156 )
ATGGTGCCAACATCCGCGGGTGAGGAGAAGGGGGGCGTCGCCAAGCGCAA
GGTGGCGCTGGTCCTGGGGTACGTGGGCACGGACTTCAGCGGCCTGCAGA
TAGACAGGAACTCAGGCGTGAGGACGGTGGAGAGCGAGATGGAGACGGCG
CTATTCAACGCCGGCGTCATTAAGGAATCGAACTACGGCGATCTGAGTAA
AATTGGGTGGAGCCGGACGAGCCGCATCCCGCTGGACGGCTTTGTCAACA
TTGCGTACGCCTCAAGGACAGACAAGGGCGTCCACGCCGCAAAGACGGTT
GTCGTCGCCAAGCTGCTGGTTGACCAGACGCAGTTCTGCGCAGCGGGCCT
CAACGCGCCGCTCAAGGCGGCGATCAACGCGTGCCTGCCGCCGGACCTGC
GCGTCTTCAGCGTCTGCAAGGTCCCCAAGGGGTTCCGCGGGCGCGGAGAG
TGCTCGTGGCGCGACTATGAGTATTACCTGCCGGCGTCACTGCTCACAGA
TGACAAAGCGACAGCCAAGTTCGGCGAGCTGCTGCGGCTCTTTGAGGGGA
CGCACAGCTTCCACAACTTCATCAGCATGAAGGGTCGCGAGCTGCGGCAG
ACCAGAAAGGAGGTCACGCTGAAAAAGTGGGCAGCGTACGACCGCCGAAA
CCGCACAGCCGCCGCCGCCGCCGACGACCAATCCGATCATGTGCCTGAAG
CTTCCGTCGGCCAATCAGACGACAACGCTGATGTCGTCAGCCAATCAGAA
GCGTCAGATGCTCCCGTCGGCCAGTCAGACGCCGCCGCTGATGCCGTGAG
CCAATCAGAAGCGTCGGACGCGTCGAACGAGCCAGTCGAGGAGGTTCAGG
AGGAGGGGGACGAGGGGGAAGGTGCGGCGGCGGGGGGGGAGGGGGCAGCG
GGCGGGGAGGGGGTCGTGATGCGCAACATCATGAAGGAGATGACCAGCAG
CATTTACAGGATGGAGTTGGAGGGGGCTCCGCTTAGTGTGGGGGGGTCGC
CGGAGCCGTTCTTACGCGTGAATGTGCGCGGCCAGAGCTTCCTCTACAAC
CAGAGCTTCCTCTACGACCAGATCCGCCTGATGGTCGGCGCGGCTCTCGC
AGAGGCCAATGGCGTGGTGCCAGCGGGGTGGGTAGCGGCAGGGCTGGAGA
CCCCCTGCACGCTCCACTTCCCCCTGGTCCCTCCGCAGGGGCTGCTGCTC
GTGTCGCAGGGGTTCACCGCCAGCAAATCAGGCAACGCTGCCGTGTTGGA
GCCGAAGCATCTTTCCGAGGTCGGCGGAACCGTCACGCAGTACGTGGGCG
GCCCACGCCTGCTGTGCAAGGGGCGCTTGCAGGCGCTCATGGGGGAAGAC
GACGTGAAGGAAGCGGAGGCGTTCCGCGACGCGAAAATACTGCCGCGCAT
TGCATCATCATGGATGGAGATAAATGCGGAGGCATTTCGCGACACGCACA
TACTGGCGCGCATCGCCTGCTCGTGGAGCGGGCAGGACTGGCTGGCGTGG
GCCCGCGAGAACAACTCGTTGCGGCCGGGAGCTGAGACAGATGCGCTGCT
TGAGGCGGTGCAATCATACGTGGGGGCGTCGCAGGAGCGGCAGGACGCTG
AGGCAACCAAGGAGGCCTTCTACAGGACGCGCGCGTTTGAGCGCGAGAGC
GCTTTGCTTAAGGAGTGCCTGCCGAAGGGCTTTGTGACAGCGGTCATATC
GCGCTTCAACATGCTGCCCGGCAACAAGGTGATGGCCGTGGAGAAAGCGC
TCGTGATCCGCATGAGGCAGGATAGCTGCCAGGTGACGGCGGTGCAGAAA
GCGCTGGTGAGCCGCATGAAGCAAGACACCGACCCCGCTCTGCCGCGCCT
GGCAACAATCGACCAGCTGCTCGCTGCCGTAGAGCGCATCGGACTCGAAA
CCATCGCCGCAGAGGGCGGCTTTCAGCCCGGCGTGGCGGCGCAGGCGTAG
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