mRNA_3630 (mRNA) Tribonema minus UTEX_B_3156

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
Namejgi.p|Trimin1|97613
Unique NamemRNA_3630
TypemRNA
OrganismTribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Homology
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BLAST of jgi.p|Trimin1|97613 vs. uniprot
Match: A0A835YHM5_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YHM5_9STRA)

HSP 1 Score: 271 bits (693), Expect = 1.150e-88
Identity = 195/195 (100.00%), Postives = 195/195 (100.00%), Query Frame = 1 
Query:   91 MQEAGGEERVFKYSLPKEPPPDDITRARXXXXXARSRGLLRGVLAITRAARVLAGGTAAAAVDAVHAGRQQARDGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXARLAAALSTGGVDGGRASLTAMIAQGRGGMRAAGRTLGRARILLRRRGAAAAAAGEGVAGDEFALELEDEDGEFESPGRLEERRGLNGVM 675
            MQEAGGEERVFKYSLPKEPPPDDITRARXXXXXARSRGLLRGVLAITRAARVLAGGTAAAAVDAVHAGRQQARDGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXARLAAALSTGGVDGGRASLTAMIAQGRGGMRAAGRTLGRARILLRRRGAAAAAAGEGVAGDEFALELEDEDGEFESPGRLEERRGLNGVM
Sbjct:    1 MQEAGGEERVFKYSLPKEPPPDDITRARXXXXXARSRGLLRGVLAITRAARVLAGGTAAAAVDAVHAGRQQARDGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXARLAAALSTGGVDGGRASLTAMIAQGRGGMRAAGRTLGRARILLRRRGAAAAAAGEGVAGDEFALELEDEDGEFESPGRLEERRGLNGVM 195
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BLAST of jgi.p|Trimin1|97613 vs. uniprot
Match: A0A835YHZ6_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YHZ6_9STRA)

HSP 1 Score: 174 bits (441), Expect = 5.280e-50
Identity = 152/216 (70.37%), Postives = 160/216 (74.07%), Query Frame = 1 
Query:   85 RVMQEAGGEERVFKYSLPKEPP--PDDITRARXXXXXARSRGLLRGVLAITRAARVLAGGTAAAAVDAVHAGRQQARDGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX----------------ARLAAALSTGGVDGGRASLTAMIAQGRGGMRAAGRTLGRARILLRRRGAAAAA-AGEGVAGDEFALELEDEDGEFESPGRLEERRGLNGVM 675
            +VMQEAGGEERVFKYSLPK+PP  PDDITR+R      RSRGLLRGVLA+ RAARV+AG        AVHA        XXXXXXXXXXXXXXXXXXXXXXXXXXXXXX                ARL AALSTGG+DGGRASLTAMIAQG GGMRAAG+ LGRARILL RRGAA     GEG AGDEFA EL DED E ESPG+LEERRG NGVM
Sbjct:   22 QVMQEAGGEERVFKYSLPKDPPSPPDDITRSRAAAAAPRSRGLLRGVLAVMRAARVVAGXXXXXXXXAVHAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXIIARLTAALSTGGIDGGRASLTAMIAQGCGGMRAAGKMLGRARILLSRRGAAXXXXGGEGAAGDEFAPELGDEDDELESPGQLEERRGPNGVM 237
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BLAST of jgi.p|Trimin1|97613 vs. uniprot
Match: A0A835YIA7_9STRA (P-loop containing nucleoside triphosphate hydrolase protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YIA7_9STRA)

HSP 1 Score: 62.0 bits (149), Expect = 2.520e-7
Identity = 30/30 (100.00%), Postives = 30/30 (100.00%), Query Frame = 1 
Query:    1 RALDVADLPALRPATLQQLDDVVDVEFPRV 90
            RALDVADLPALRPATLQQLDDVVDVEFPRV
Sbjct:  310 RALDVADLPALRPATLQQLDDVVDVEFPRV 339
The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|97613 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
A0A835YHM5_9STRA1.150e-88100.00Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A835YHZ6_9STRA5.280e-5070.37Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A835YIA7_9STRA2.520e-7100.00P-loop containing nucleoside triphosphate hydrolas... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Contig_9contigContig_9:1371712..1374770 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Tribonema minus UTEX_B_31562021-06-17
Properties
Property NameValue
ProteomeIdTrimin1|97613|CE97612_113
Hectar predicted targeting categoryother localisation
TranscriptId97935
TrackFilteredModels1
ProteinId97613
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|97613gene_3630Tribonema minus UTEX_B_3156 geneContig_9 1371712..1374770 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|97613Trimin1|97613|CE97612_113Tribonema minus UTEX_B_3156 polypeptideContig_9 1372868..1374578 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
exon_3630_1exon_3630_1Tribonema minus UTEX_B_3156 exonContig_9 1371712..1371798 +
exon_3630_2exon_3630_2Tribonema minus UTEX_B_3156 exonContig_9 1372865..1373116 +
exon_3630_3exon_3630_3Tribonema minus UTEX_B_3156 exonContig_9 1374240..1374770 +


The following five_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
UTR5_3630UTR5_3630Tribonema minus UTEX_B_3156 five_prime_UTRContig_9 1371712..1371798 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
CDS_3630CDS_3630Tribonema minus UTEX_B_3156 CDSContig_9 1372868..1373116 +


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
UTR3_3630UTR3_3630Tribonema minus UTEX_B_3156 three_prime_UTRContig_9 1374579..1374770 +


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>mRNA_3630 ID=mRNA_3630|Name=jgi.p|Trimin1|97613|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=870bp|location=Sequence derived from alignment at Contig_9:1371712..1374770+ (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon.  
CGAGCGCTCGACGTCGCCGATCTCCCTGCGCTGCGGCCGGCGACGCTGCA
GCAGCTCGACGACGTTGTCGACGTGGAGTTCCCGCGGGTGATGCAGGAGG
CGGGCGGCGAGGAGCGCGTGTTCAAATACTCGCTGCCCAAGGAGCCGCCG
CCGGACGACATCACGCGCGCGCGCGCCGCCGCCGCCGCTGCGCGCTCGCG
CGGCCTGCTGCGCGGCGTGCTCGCCATAACGCGTGCCGCGCGCGTGCTGG
CCGGCGGCACCGCCGCCGCCGCCGTCGATGCGGTCCACGCGGGGCGGCAG
CAGGCGCGTGACGGCGCTGCTGCCGCGCCAGCGCCGAGGAAGCAGCGGCG
CTCCGTCACAACGCTGCTGCTCCTGCTGCCGGCGCTGCTGACCGCGGCGA
TAATCGCGCGCCTCGCGGCAGCGCTCAGCACTGGCGGCGTCGACGGCGGC
CGCGCGTCGTTGACCGCCATGATCGCGCAAGGCCGAGGCGGCATGCGCGC
AGCGGGAAGAACGCTGGGGCGCGCGCGCATTTTGCTGCGCCGTAGAGGCG
CTGCTGCCGCTGCTGCTGGGGAGGGGGTAGCGGGGGATGAGTTTGCGCTG
GAATTGGAGGATGAAGATGGCGAATTTGAGTCGCCAGGGCGGTTGGAAGA
GCGCAGGGGCCTCAATGGTGTGATGTAGTATTGCGGCAAGGAGCGCTGTG
CGCGCGCGGCTCTGAAGACTTCAGGGCGAGGGCGCAGGCCTGCATTCTAT
ATCGTGCGGTAGTGAGTGAATAGGTGCAGAGTTGACGCTGCAGCACGCCA
AGTGCCGCATCCTGTTTGATTTCATAGCACACAATCATACAGCAGGCAGC
CAAATGGAGGTGGTGTGCGA
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protein sequence of jgi.p|Trimin1|97613

>Trimin1|97613|CE97612_113 ID=Trimin1|97613|CE97612_113|Name=jgi.p|Trimin1|97613|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=196bp
MQEAGGEERVFKYSLPKEPPPDDITRARAAAAAARSRGLLRGVLAITRAA
RVLAGGTAAAAVDAVHAGRQQARDGAAAAPAPRKQRRSVTTLLLLLPALL
TAAIIARLAAALSTGGVDGGRASLTAMIAQGRGGMRAAGRTLGRARILLR
RRGAAAAAAGEGVAGDEFALELEDEDGEFESPGRLEERRGLNGVM*
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mRNA from alignment at Contig_9:1371712..1374770+

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_3630 ID=mRNA_3630|Name=jgi.p|Trimin1|97613|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=3059bp|location=Sequence derived from alignment at Contig_9:1371712..1374770+ (Tribonema minus UTEX_B_3156 )
CGAGCGCTCGACGTCGCCGATCTCCCTGCGCTGCGGCCGGCGACGCTGCA
GCAGCTCGACGACGTTGTCGACGTGGAGTTCCCGCGGGTGAGCGCTGCCA
CGTAGCACTGTTCATTGAGCGCTGCTGCGGCACGCGGGGCGCGTTTCGAG
CGCTGCTGAACGACCCGCTGAATGGCCTGCTGCGCTGCAGCAGCCGCGGC
CGCTGACCGCTGCTTTGCTGAGCGCTGCTTCAGCCAAGGCCAGGTTGGGC
AGCAATCAGGGTGCCTTGAAGCTGCTGCCGCGCCGCTGTGTGACACCACG
TGCCGCCGCCGCCGCTGCCGCCAGAGCAGTACACACCTTATCCCCACACG
CACACTGCACTGTCAGCGGCGTTACGTTATTGTGGCAGGTGATGTGAGAG
GCGGGAGGAGGGAGCGCGTCTTCTAAGTTACCCTCTGCTGCATCTCGAAG
TTGCGACGCACCGCTGCTGCACGCCGCCACGCCGCCGCCATTGCTGCACG
CTCTCACCTCAATGCACCCGCACATCAACTCGCGAGCACTTCTCCACCGG
CTCAAGCGCATGCATTCCTTTCGCGGCGCTGAGCATTTGGTGCAGGAGGC
GGGCGGCAAGGAGCGCGTCTTGAAGTACTTTCCGTCACATCTATGAAATT
GCGATGCACCGCTTTTGCAAGACGCCACGCGCCGCCGCTGCCGCCAAAAC
TGCACGCATCCGCAAGCAACCCCCTCTCCGCCGGCCTTAGCGCATTCCCT
TCTTGCCCCTGCTTGCGGCACTGCGCAGGTGATGCGGGAGGCGGGCGGCG
AGGAGCGCGTCCTCAAGTACTCTCTGTGCCGCATGTTCAAGTTGTGACGC
ACCGCTGCTGCTCGCCGCCGCCAATGCTGCGCAATCTCACTTCCATGCAC
GCACACATCAATTCACAGGCGCCTCTCAAGCGCATTCTCCTTGCTCGCGG
CGCTATCGCAGGTGATGCAGGAGGCGGGCGGCGTGGAGCGCGTCTTCAAG
TACTCGCTGCTGCATCTTGAAGTTGCCACACCACGCCGCCGCCGCCGCTG
CCGTCAAACTTCATGCATCCGCAAGCAATCACCTCTCCGCCGGCCCAAGC
TCATTCATTCAATCAAAGTTCCCGTCTTGCCCCCTGCGTGCGGCGTTGGG
CAGGTGATGCAGGAGGCGGGCGGCGAGGAGCGCGTGTTCAAATACTCGCT
GCCCAAGGAGCCGCCGCCGGACGACATCACGCGCGCGCGCGCCGCCGCCG
CCGCTGCGCGCTCGCGCGGCCTGCTGCGCGGCGTGCTCGCCATAACGCGT
GCCGCGCGCGTGCTGGCCGGCGGCACCGCCGCCGCCGCCGTCGATGCGGT
CCACGCGGGGCGGCAGCAGGCGCGTGACGGCGCTGCTGCCGCGCCAGCGC
CGAGGGTGCGTTCACGTGCACCGTATTGTTTTGTTGCCGTGCTCTCTGTG
TGCGGGCGTTTCGCGAGTGCGAGGGGATGGCTGGGTGCTGTCGCGCAGTC
CTCAAGTTTCATTTGAAAGATTTTGTGTCAGCAGCACACAATCGTGCTGC
TTTGTGTAGTCTTCAACTTTGCGGTTCGAATAAGATTCTCTGTCAGCAGT
ACTCACATATTTTTGGCGATGCGCGCTGGCAGGCGGCACTGCTGCCGCCG
CCGTCGATGCAGTTGACGTAGGGCGGCAGCGGGCTGCGACTGCGCTGCTA
CTGCTGCGGCGGCGCCGAAAATGCCGGAGTAGTAGTAGTGGTTCAATTCA
AAACGGCTGGTACGCTTTTGTGCATGTGCAACTTTGCCACTGTGCAAGAG
AAGGTGTTCAAGTGAAAGTTACATAGTGGTCGATGTGCGCGCCGCAAGCG
GTTGCCGTCGATGCCGTCATTACGGAACGGCACTAGGCGCCGTTGCCAAA
GGCTCTGTGACATTCAAAATAATGCTGGTAGGTATGCAGTGGCGACTTGG
TAACGTATACTGTATGTGAGCGATTTACCGCTGCAGTCAATGCCGTGCAC
GCGGCGGCAGCAGCAGAGGCGCGACGGTGCCGCTGCCCCTGCGTCGCCGG
CGCCAAGGGGTACTGTGACGCATCAGCGCTGGTCCGCTTTCGTTCATAAT
CTTGACGCTTGCCAGTGCCTACAAGCTGTCTTCAGGTTCTACTCGATGGG
CGTGGTGCTGTCATGCAGTTCACGCCTCTGGCGGTTCATATATTCATTGT
GAGCTTTGTCAGCGGCATGCGCTTTTGTGGCGCTGACAAACAGTGCGCGA
CGTTGACTGTACAACCGGAATTTGCTGGAGCGGCGCACGCCTTGGCTCTG
TTACGGTGTTCTGGCGGCACGCTTGGCTGGCCTGGTGCCCAACAATCTGC
TAGTGCCGGCGCCGCCGCCGCCGCGATTCTCACGCACCCGCCGCCGTCTT
GCCGTCACACCAGTCCATCGTCGCTGCGCGCCGCAATCGCCGTCACCATT
TCGCATACTTCGAAGTACTGCTTCTCCCGCATCTCACAACTGGCGCACTG
ACGCAAAACGTTCGCTTGCCGCCAGCAGAAGCAGCGGCGCTCCGTCACAA
CGCTGCTGCTCCTGCTGCCGGCGCTGCTGACCGCGGCGATAATCGCGCGC
CTCGCGGCAGCGCTCAGCACTGGCGGCGTCGACGGCGGCCGCGCGTCGTT
GACCGCCATGATCGCGCAAGGCCGAGGCGGCATGCGCGCAGCGGGAAGAA
CGCTGGGGCGCGCGCGCATTTTGCTGCGCCGTAGAGGCGCTGCTGCCGCT
GCTGCTGGGGAGGGGGTAGCGGGGGATGAGTTTGCGCTGGAATTGGAGGA
TGAAGATGGCGAATTTGAGTCGCCAGGGCGGTTGGAAGAGCGCAGGGGCC
TCAATGGTGTGATGTAGTATTGCGGCAAGGAGCGCTGTGCGCGCGCGGCT
CTGAAGACTTCAGGGCGAGGGCGCAGGCCTGCATTCTATATCGTGCGGTA
GTGAGTGAATAGGTGCAGAGTTGACGCTGCAGCACGCCAAGTGCCGCATC
CTGTTTGATTTCATAGCACACAATCATACAGCAGGCAGCCAAATGGAGGT
GGTGTGCGA
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Coding sequence (CDS) from alignment at Contig_9:1371712..1374770+

>mRNA_3630 ID=mRNA_3630|Name=jgi.p|Trimin1|97613|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=588bp|location=Sequence derived from alignment at Contig_9:1371712..1374770+ (Tribonema minus UTEX_B_3156 )
ATGCAGGAGGCGGGCGGCGAGGAGCGCGTGTTCAAATACTCGCTGCCCAA
GGAGCCGCCGCCGGACGACATCACGCGCGCGCGCGCCGCCGCCGCCGCTG
CGCGCTCGCGCGGCCTGCTGCGCGGCGTGCTCGCCATAACGCGTGCCGCG
CGCGTGCTGGCCGGCGGCACCGCCGCCGCCGCCGTCGATGCGGTCCACGC
GGGGCGGCAGCAGGCGCGTGACGGCGCTGCTGCCGCGCCAGCGCCGAGGA
AGCAGCGGCGCTCCGTCACAACGCTGCTGCTCCTGCTGCCGGCGCTGCTG
ACCGCGGCGATAATCGCGCGCCTCGCGGCAGCGCTCAGCACTGGCGGCGT
CGACGGCGGCCGCGCGTCGTTGACCGCCATGATCGCGCAAGGCCGAGGCG
GCATGCGCGCAGCGGGAAGAACGCTGGGGCGCGCGCGCATTTTGCTGCGC
CGTAGAGGCGCTGCTGCCGCTGCTGCTGGGGAGGGGGTAGCGGGGGATGA
GTTTGCGCTGGAATTGGAGGATGAAGATGGCGAATTTGAGTCGCCAGGGC
GGTTGGAAGAGCGCAGGGGCCTCAATGGTGTGATGTAG
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