mRNA_3622 (mRNA) Tribonema minus UTEX_B_3156
|
Overview
Homology
BLAST of jgi.p|Trimin1|347240 vs. uniprot
Match: A0A836C8F4_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836C8F4_9STRA) HSP 1 Score: 940 bits (2430), Expect = 0.000e+0 Identity = 836/836 (100.00%), Postives = 836/836 (100.00%), Query Frame = 2
Query: 38 MSPFNMLQSMMPGAQGPPTSMQMGGPFPSYPHLQQHAMGGPALPPPPVFTPWNSLAPPQTMPHQGIPPYATSTSISTSTSARTGSSKAPHPPVPQQAPLPXXXXXXXXXXXAPPFVPSPPPKELYEGDFRGLGRGGRSAEATAAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXKRASDVPPDVRAAQSRDRNREHARNTRLRKKAYVEELKKTVDELAHDRDAAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAQRAWLDIADNTLQLRHPALSVAAACAXXXXXXXXQRSGXXXXXXXXXXXXXXXXPRGAQQIVAELTRLDAALAEICCSGGXXRVRXXXXXXXXXXXXXDGSVSSGGVRLAYSLDREGAAMGACVVMAPWRAVTENAVARGASEEISMTGGMLKATFTPSNKLTALDLAFDTAALAEALSRALPPSAAVTNTSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXQYGGSGRRHVLDEVNGTVDDCVRNRVIAAVSEGRAASACFRSGTPCAGGSGXXXXXXXXXXXXXXRGALQHLRVFPMADGSAAGTVHFVGMLQVMSDMYQSSAPXXXXXXXXXXXXXXXXXXXXXXXXXGNRGXXXXXXXXXXXXXXXXXXXXXSAESTSDFSFLGDGCSSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRAWLGDGGSAALAPYALAGDGGCGXXXXXXXXXXXXXXXXXXXXXXXXPRGFGAALDGSSGGGAISVLAPQPYGIGEDMCGDXXXXXXXXXXXXGGFFDSGAASPPLGMDVVARCGDGSDAAXXXXXXXXXXXVGCVSL 2545
MSPFNMLQSMMPGAQGPPTSMQMGGPFPSYPHLQQHAMGGPALPPPPVFTPWNSLAPPQTMPHQGIPPYATSTSISTSTSARTGSSKAPHPPVPQQAPLPXXXXXXXXXXXAPPFVPSPPPKELYEGDFRGLGRGGRSAEATAAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXKRASDVPPDVRAAQSRDRNREHARNTRLRKKAYVEELKKTVDELAHDRDAAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAQRAWLDIADNTLQLRHPALSVAAACAXXXXXXXXQRSGXXXXXXXXXXXXXXXXPRGAQQIVAELTRLDAALAEICCSGGXXRVRXXXXXXXXXXXXXDGSVSSGGVRLAYSLDREGAAMGACVVMAPWRAVTENAVARGASEEISMTGGMLKATFTPSNKLTALDLAFDTAALAEALSRALPPSAAVTNTSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXQYGGSGRRHVLDEVNGTVDDCVRNRVIAAVSEGRAASACFRSGTPCAGGSGXXXXXXXXXXXXXXRGALQHLRVFPMADGSAAGTVHFVGMLQVMSDMYQSSAPXXXXXXXXXXXXXXXXXXXXXXXXXGNRGXXXXXXXXXXXXXXXXXXXXXSAESTSDFSFLGDGCSSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRAWLGDGGSAALAPYALAGDGGCGXXXXXXXXXXXXXXXXXXXXXXXXPRGFGAALDGSSGGGAISVLAPQPYGIGEDMCGDXXXXXXXXXXXXGGFFDSGAASPPLGMDVVARCGDGSDAAXXXXXXXXXXXVGCVSL
Sbjct: 1 MSPFNMLQSMMPGAQGPPTSMQMGGPFPSYPHLQQHAMGGPALPPPPVFTPWNSLAPPQTMPHQGIPPYATSTSISTSTSARTGSSKAPHPPVPQQAPLPXXXXXXXXXXXAPPFVPSPPPKELYEGDFRGLGRGGRSAEATAAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXKRASDVPPDVRAAQSRDRNREHARNTRLRKKAYVEELKKTVDELAHDRDAAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAQRAWLDIADNTLQLRHPALSVAAACAXXXXXXXXQRSGXXXXXXXXXXXXXXXXPRGAQQIVAELTRLDAALAEICCSGGXXRVRXXXXXXXXXXXXXDGSVSSGGVRLAYSLDREGAAMGACVVMAPWRAVTENAVARGASEEISMTGGMLKATFTPSNKLTALDLAFDTAALAEALSRALPPSAAVTNTSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXQYGGSGRRHVLDEVNGTVDDCVRNRVIAAVSEGRAASACFRSGTPCAGGSGXXXXXXXXXXXXXXRGALQHLRVFPMADGSAAGTVHFVGMLQVMSDMYQSSAPXXXXXXXXXXXXXXXXXXXXXXXXXGNRGXXXXXXXXXXXXXXXXXXXXXSAESTSDFSFLGDGCSSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRAWLGDGGSAALAPYALAGDGGCGXXXXXXXXXXXXXXXXXXXXXXXXPRGFGAALDGSSGGGAISVLAPQPYGIGEDMCGDXXXXXXXXXXXXGGFFDSGAASPPLGMDVVARCGDGSDAAXXXXXXXXXXXVGCVSL 836
BLAST of jgi.p|Trimin1|347240 vs. uniprot
Match: A0A836CJP7_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CJP7_9STRA) HSP 1 Score: 137 bits (345), Expect = 1.860e-29 Identity = 143/421 (33.97%), Postives = 178/421 (42.28%), Query Frame = 2
Query: 584 KRASDVPPDVRAAQSRDRNREHARNTRLRKKAYVEELKKTVDELAHDRDAAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAQ---------RAWLDIADNTLQLRHPALSVAAACAXXXXXXXXQRSGXXXXXXXXXXXXXXXXPRGAQQIVAELTRLDAALAEICCSGGXXRVRXXXXXXXXXXXXXDGSVSSGGVRLAYSLDREGAAMGACVVMAPWRAVTENAVARGASEEISMTGGMLKATFTPSNKLTALDLAFDTAALAEALSRALPPSAAVTNTSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXQYGGSGRRHVLDEVNGTVDDCVRNRVIAAVSEGRAASACFRSGTPCAGGSGXXXXXXXXXXXXXXRGALQHLRVFPMADGSAAGTVHFVGMLQVMSD 1819
+R S + D RA SRDRNREHARNTRLRKKAYVEELKKTV+EL RD AA ++ RAW + D+ L+H L+ + G ++AEL L A L + S R VRLAY++D G +G +MAPWRA T AVA GA E+ M GGML+ATFTP N+L +L + FDTA A ALS A+P +A XX RH LDE+ + AV E R+AS CFR+ SG XXXXXXXXXXXX LQ L+VFPM+ T+HFVG+LQ++ +
Sbjct: 221 RRLSALTADERAQASRDRNREHARNTRLRKKAYVEELKKTVEELERHRDWAAREAVISAQRRAEADALRLRVVEAFLELRGGGGSKGGAAAADEARAWRPLVDDAFVLQHAGLTCGGGGSKSPASSRLT---------------------GIPHVLAELAELRALLDGVAGSSAAAAPRRDRAAARALPLPR--------VRLAYAVDAAGMTVGGTTLMAPWRATTVGAVACGARAELVMNGGMLRATFTPQNRLASLHMVFDTAPFAAALSAAVPSRSAPPTAXXXGTAVVSSDSDASGRRCSGSSGGAECSVTAAALPARRS------RHPLDEI------------VDAVRERRSASVCFRASP-----SGGAXXXXXXXXXXXXXAPLQSLQVFPMS-AQGPDTLHFVGVLQMLPE 588
BLAST of jgi.p|Trimin1|347240 vs. uniprot
Match: A0A835ZEZ9_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZEZ9_9STRA) HSP 1 Score: 117 bits (293), Expect = 4.260e-23 Identity = 229/480 (47.71%), Postives = 257/480 (53.54%), Query Frame = 2
Query: 584 KRASDVPPDVRAAQSRDRNREHARNTRLRKKAYVEELKKTVDELA--------HDRDAAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAQRAWLDIADNTLQLRHPALSVAAACAXXXXXXXXQRSGXXXXXXXXXXXXXXXXPRGAQQIVAELTRLDAALAEICCSGGXXRVRXXXXXXXXXXXXXD---------GSVSSGG--VRLAYSLDREGAAMGACVVMAPWRAVTENAVARGASEEISMTG-------------------------GMLKATFTPSNKLTALDLAFDTAALAEALSRALPPSAAVTNTSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXQ-------YGGSGRRHVLDEVNGTVDDCVRNRVIAAVSEGRAASACFRSGTPCAGGSGXXXXXXXXXXXXXXR-------------------GALQHLRVFPMADGSAAGTVHFVGMLQVM 1813
+R DV PDVR ++RDRNRE+ARNTR RKKAY+EELK+TV+ LA XXXXXXXXXXX AQ+ W IAD+ L LRHPAL++ A XXXXXXXXX G ++A L + DAAL +I +GG X XXXXXXXXXXXXX G + SG V+L Y L+ A A VMAPW AVTE A AR E+ MT GMLKATF+ +KLTAL+L FDTAA A +L R LP XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX Y G RHVLDEV +AAVSEG A+ACFR P A G XXXXXXXXXXXXXX G HL VFP+A SA GT FVG+LQVM
Sbjct: 288 RRGGDVAPDVRLRRTRDRNRENARNTRARKKAYLEELKRTVNSLAAXXXXXXXXXXXXXXXXXXXXXXXXXRMSALQRCLAMLSSGTFGSSRAQQQWCAIADDGLLLRHPALAIVARHRRLCRQRDRAXXXXXXXXXXXXAADPASALHGVPCVMAALLQFDAALRDI--AGGSXXXXXXXXXXXXXXXXXXXXXXXXXXXGGIGSGSPEVKLVYVLNAADAVSSADTVMAPWSAVTEGAAARARGGEVFMTALLSMXXXXXXXXXXXXXXXXXXXXDGMLKATFSAQSKLTALELVFDTAAFAASLERLLPAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXYSGV-PRHVLDEV------------LAAVSEGHTATACFR---PEASGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGSDGPWHHLHVFPLA--SAPGTRRFVGVLQVM 747
BLAST of jgi.p|Trimin1|347240 vs. uniprot
Match: A0A7S0C2V5_9STRA (Hypothetical protein n=1 Tax=Proboscia inermis TaxID=420281 RepID=A0A7S0C2V5_9STRA) HSP 1 Score: 79.7 bits (195), Expect = 1.410e-11 Identity = 76/265 (28.68%), Postives = 110/265 (41.51%), Query Frame = 2
Query: 584 KRASDVPPDVRAAQSRDRNREHARNTRLRKKAYVEELKKTVDELAHDRDAAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAQ-RAWLDIADNTLQLRHPALSVAAACAXXXXXXXXQRSGXXXXXXXXXXXXXXXXPRGAQQIVAELTRLDAALAEICCSGGXXRVRXXXXXXXXXXXXXDGSVSSGGVRLAYSLDREGAAMGACVVMAPWRAVTENAVARGASEEISMTGGMLKATFTPS-NKLTALDLAFDTAALAEAL 1372
+R + PD RA Q+RDRNREHARNTRLRKKAYVEELK+T+ E+ RD+A + W I ++ P + RGAQ+++ + + L AAL I + +++ V ++Y D M C+ + W A+T AV +GA+ EI G L+ATF+PS NKLT+ ++ FDT + +E L
Sbjct: 241 RRRLHLTPDERARQNRDRNREHARNTRLRKKAYVEELKRTLTEMVAQRDSAELDRRHVAQREMEQREVRFRVMEEFLKLRGSNEPNMQRWSAIFESCFTFTLPLTNFRKVVKHNNASQPI------------LTHKYEQLLRGAQEVMTDASYLAAALEMI---------------GKGTLPWANNAMTGNKVFISYDCDSSRFLMDDCIGVMDWSAITVGAVNQGATAEIVWKGS-LRATFSPSTNKLTSAEIIFDTKSFSEQL 477
BLAST of jgi.p|Trimin1|347240 vs. uniprot
Match: A0A6V2QQD8_9STRA (Hypothetical protein n=2 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A6V2QQD8_9STRA) HSP 1 Score: 78.6 bits (192), Expect = 4.610e-11 Identity = 74/264 (28.03%), Postives = 102/264 (38.64%), Query Frame = 2
Query: 593 SDVPPDVRAAQSRDRNREHARNTRLRKKAYVEELKKTVDELAHDRDAAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAQRA-WLDIADNTLQLRHPALSVAAACAXXXXXXXXQRSGXXXXXXXXXXXXXXXXPRGAQQIVAELTRLDAALAEICCSGGXXRVRXXXXXXXXXXXXXDGSVSSGGVRLAYSLDREGAAMGACVVMAPWRAVTENAVARGASEEISMTGGMLKATFTP-SNKLTALDLAFDTAALAEALSR 1378
+++ PD RA Q+RDRNREHARNTRLRKKAYVEELK+T+ EL RDA+ A W+ I ++ P + A G G+ LT A+ + GV L Y DR+ M + W A T AV +G+ E+++ G M ++TF+P SNKL +DL FDT +++ L R
Sbjct: 532 ANLTPDERAKQNRDRNREHARNTRLRKKAYVEELKRTLTELVSQRDASELERRHSSQRDLEQREVRFRVMEEFLKLRGRNELNVARWVAILEDNFVFTLPKTDYRKSVAAKSMTRQVSVDGGINSSTTPIAA-------GSMSFEQTLTGAGEAMEDASFLSALLDTLGHGKNAMHPEWAHAAQQVKAGVCLVYHCDRKKFLMDGTTAVLEWTATTVGAVNQGSPSELTLKGSM-RSTFSPASNKLITVDLLFDTGLVSQQLKR 787
BLAST of jgi.p|Trimin1|347240 vs. uniprot
Match: A0A7S2XIY1_9STRA (Hypothetical protein n=1 Tax=Attheya septentrionalis TaxID=420275 RepID=A0A7S2XIY1_9STRA) HSP 1 Score: 76.6 bits (187), Expect = 7.100e-11 Identity = 77/261 (29.50%), Postives = 103/261 (39.46%), Query Frame = 2
Query: 587 RASDVPPDVRAAQSRDRNREHARNTRLRKKAYVEELKKTVDELAHDRDAAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAQRA-WLDIADNTLQLRHPALSVAAACAXXXXXXXXQRSGXXXXXXXXXXXXXXXXPRGAQQIVAELTRLDAALAEICCSGGXXRVRXXXXXXXXXXXXXDGSVSSGGVRLAYSLDREGAAMGACVVMAPWRAVTENAVARGASEEISMTGGMLKATFTP-SNKLTALDLAFDTAALA 1363
R +++ PD RA Q+RDRNREHARNTRLRKKAYVEELK T+ EL RD A A W I ++ P A ++SG +++A+ +L A L I G R+ + V + YS DR M C + W A T AV GA E+ G +++A F+P SNKL + L FDT ++A
Sbjct: 107 RRANLTPDERARQNRDRNREHARNTRLRKKAYVEELKSTLTELVAQRDRAELERRQTAQRELEQREVRFRVMEEFLHLRGRNEPTAARWSAILEDGFTFTLPVTHFRAMAKADLKGKALRKSGTIRDSNQYEQVFT-----SVAEVMADSAQLGAFLGSI---GMNNRL----------------ATDKAIVSIEYSCDRSKFFMDGCNAVLDWTATTIGAVHNGAGSELKFRG-IIRAKFSPESNKLVSASLDFDTGSIA 342
BLAST of jgi.p|Trimin1|347240 vs. uniprot
Match: A0A7S2SKT6_9STRA (Hypothetical protein (Fragment) n=1 Tax=Eucampia antarctica TaxID=49252 RepID=A0A7S2SKT6_9STRA) HSP 1 Score: 71.6 bits (174), Expect = 3.820e-9 Identity = 37/50 (74.00%), Postives = 42/50 (84.00%), Query Frame = 2
Query: 587 RASDVPPDVRAAQSRDRNREHARNTRLRKKAYVEELKKTVDELAHDRDAA 736
R +++ PD RA Q+RDRNREHARNTRLRKKAYVEELKKT+ EL RDAA
Sbjct: 200 RRANLTPDERARQNRDRNREHARNTRLRKKAYVEELKKTLTELVAQRDAA 249
BLAST of jgi.p|Trimin1|347240 vs. uniprot
Match: A0A6U9VFM9_9STRA (Hypothetical protein n=2 Tax=Pseudo-nitzschia australis TaxID=44445 RepID=A0A6U9VFM9_9STRA) HSP 1 Score: 70.1 bits (170), Expect = 1.630e-8 Identity = 77/265 (29.06%), Postives = 106/265 (40.00%), Query Frame = 2
Query: 587 RASDVPPDVRAAQSRDRNREHARNTRLRKKAYVEELKKTVDELAHDRDAAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAQRA-WLDIADNTLQLRHPALSVAAACAXXXXXXXXQRSGXXXXXXXXXXXXXXXXPRGAQQIVAELTRLDAALAEICCSGGXXRVRXXXXXXXXXXXXXDGSVSSGGVRLAYSLDREGAAMGACVVMAPWRAVTENAVARGASEEISMTGGMLKATFTP-SNKLTALDLAFDTAALAEALS 1375
R S++ PD RA Q+RDRNREHARNTRLRKKAYVEELK T+ L RDAA A A W I ++ L P +S + R+G G +++ + + L + G +R LAY+ DR M CV M W A T+ A G E+ + G ++A F+P SNKL ++ ++FDT A+ L+
Sbjct: 408 RRSNLTPDERARQNRDRNREHARNTRLRKKAYVEELKATLSALVTQRDAAELEKRHASQRELEQREVRFRVLEEFLKLRGRNEANAARWAAILEDKFTLTMPVVSFRSMV---HSNDSSHRTGNVCEQVLT----------GVTEVMNDSSFFSNFLQSLG-KNGSNELRT----------------------LAYNCDRSNFFMDNCVAMFDWTATTQGA--SGQRGELFLKG-QIRAKFSPASNKLISVMMSFDTGAIISQLN 633
BLAST of jgi.p|Trimin1|347240 vs. uniprot
Match: A0A1Z5J7X6_FISSO (Uncharacterized protein n=2 Tax=Fistulifera solaris TaxID=1519565 RepID=A0A1Z5J7X6_FISSO) HSP 1 Score: 68.9 bits (167), Expect = 3.340e-8 Identity = 35/50 (70.00%), Postives = 41/50 (82.00%), Query Frame = 2
Query: 587 RASDVPPDVRAAQSRDRNREHARNTRLRKKAYVEELKKTVDELAHDRDAA 736
R ++ PD RA Q+RDRNREHARNTRLRKKAYVEELK+T+ EL RDA+
Sbjct: 321 RRQNLTPDERARQNRDRNREHARNTRLRKKAYVEELKRTLTELVAQRDAS 370
BLAST of jgi.p|Trimin1|347240 vs. uniprot
Match: B7FNT6_PHATC (Predicted protein n=2 Tax=Phaeodactylum tricornutum TaxID=2850 RepID=B7FNT6_PHATC) HSP 1 Score: 68.9 bits (167), Expect = 3.370e-8 Identity = 36/50 (72.00%), Postives = 40/50 (80.00%), Query Frame = 2
Query: 587 RASDVPPDVRAAQSRDRNREHARNTRLRKKAYVEELKKTVDELAHDRDAA 736
R ++ PD RA Q+RDRNREHARNTRLRKKAYVEELK T+ EL RDAA
Sbjct: 312 RRQNLTPDERARQNRDRNREHARNTRLRKKAYVEELKHTLTELVAQRDAA 361 The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|347240 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following exon feature(s) are a part of this mRNA:
The following three_prime_UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following five_prime_UTR feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
spliced messenger RNA >mRNA_3622 ID=mRNA_3622|Name=jgi.p|Trimin1|347240|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=2910bp|location=Sequence derived from alignment at Contig_9:1276181..1283836- (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon. CGGGGGGCTTGGTGAGCGAGGAGAGGGGCAGCCTGGCATGTCACCATTCAback to top protein sequence of jgi.p|Trimin1|347240 >Trimin1|347240|estExt_Genemark1.C_Ctg_90131 ID=Trimin1|347240|estExt_Genemark1.C_Ctg_90131|Name=jgi.p|Trimin1|347240|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=837bp MSPFNMLQSMMPGAQGPPTSMQMGGPFPSYPHLQQHAMGGPALPPPPVFTback to top mRNA from alignment at Contig_9:1276181..1283836- Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_3622 ID=mRNA_3622|Name=jgi.p|Trimin1|347240|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=7656bp|location=Sequence derived from alignment at Contig_9:1276181..1283836- (Tribonema minus UTEX_B_3156 )back to top Coding sequence (CDS) from alignment at Contig_9:1276181..1283836- >mRNA_3622 ID=mRNA_3622|Name=jgi.p|Trimin1|347240|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=2511bp|location=Sequence derived from alignment at Contig_9:1276181..1283836- (Tribonema minus UTEX_B_3156 )back to top |