mRNA_3586 (mRNA) Tribonema minus UTEX_B_3156

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
Namejgi.p|Trimin1|347223
Unique NamemRNA_3586
TypemRNA
OrganismTribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Homology
BLAST of jgi.p|Trimin1|347223 vs. uniprot
Match: A0A835YR45_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YR45_9STRA)

HSP 1 Score: 981 bits (2537), Expect = 0.000e+0
Identity = 491/491 (100.00%), Postives = 491/491 (100.00%), Query Frame = 1
Query:    1 MLYTYCTPSMLTKAPPKTPPPQNSGDLTDAAAELPLLEVEQDCIKAILRQLACDAADTAPVPGVATLNTAMAMLQQRLTALKAANDCHNFDSLAQHANATATSEVFSSTHLLGTIMSFAAPGAFLFVATVSRRVGAVAMQVASVHGAGSVCVTGIDAALSSASRLALALVSTGFTDLVQLLSSNETRLPCPCGSLGKLESLQAVESMQLAGMHVCSEVLIGAAIKCNIGHLRSISAAESWPPHYFYVLCNAAAMFGHIGTLNFLLEHGRQLFSDQRLRLPTPDDASTWGYKGAIVFTDAHGTDHALTLVDAAAMADDASVLRWLHARHPPLQFTRITMTLAAGCGGLPTMKWLRAQGCSHDINEVAKTLLQMRQGAATPPKMEWVRSCGGGDWSAQGMTDMLVEALTHSSPALARWLRAEGARWPTDLAEVVMTKPGPVEPRTLLWAVQQGCPFDLWTSEVCEVLSERSAEAAAVKLALHDLGCPCGCPRP 1473
            MLYTYCTPSMLTKAPPKTPPPQNSGDLTDAAAELPLLEVEQDCIKAILRQLACDAADTAPVPGVATLNTAMAMLQQRLTALKAANDCHNFDSLAQHANATATSEVFSSTHLLGTIMSFAAPGAFLFVATVSRRVGAVAMQVASVHGAGSVCVTGIDAALSSASRLALALVSTGFTDLVQLLSSNETRLPCPCGSLGKLESLQAVESMQLAGMHVCSEVLIGAAIKCNIGHLRSISAAESWPPHYFYVLCNAAAMFGHIGTLNFLLEHGRQLFSDQRLRLPTPDDASTWGYKGAIVFTDAHGTDHALTLVDAAAMADDASVLRWLHARHPPLQFTRITMTLAAGCGGLPTMKWLRAQGCSHDINEVAKTLLQMRQGAATPPKMEWVRSCGGGDWSAQGMTDMLVEALTHSSPALARWLRAEGARWPTDLAEVVMTKPGPVEPRTLLWAVQQGCPFDLWTSEVCEVLSERSAEAAAVKLALHDLGCPCGCPRP
Sbjct:    1 MLYTYCTPSMLTKAPPKTPPPQNSGDLTDAAAELPLLEVEQDCIKAILRQLACDAADTAPVPGVATLNTAMAMLQQRLTALKAANDCHNFDSLAQHANATATSEVFSSTHLLGTIMSFAAPGAFLFVATVSRRVGAVAMQVASVHGAGSVCVTGIDAALSSASRLALALVSTGFTDLVQLLSSNETRLPCPCGSLGKLESLQAVESMQLAGMHVCSEVLIGAAIKCNIGHLRSISAAESWPPHYFYVLCNAAAMFGHIGTLNFLLEHGRQLFSDQRLRLPTPDDASTWGYKGAIVFTDAHGTDHALTLVDAAAMADDASVLRWLHARHPPLQFTRITMTLAAGCGGLPTMKWLRAQGCSHDINEVAKTLLQMRQGAATPPKMEWVRSCGGGDWSAQGMTDMLVEALTHSSPALARWLRAEGARWPTDLAEVVMTKPGPVEPRTLLWAVQQGCPFDLWTSEVCEVLSERSAEAAAVKLALHDLGCPCGCPRP 491          
BLAST of jgi.p|Trimin1|347223 vs. uniprot
Match: A0A835YKQ3_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YKQ3_9STRA)

HSP 1 Score: 517 bits (1332), Expect = 1.500e-178
Identity = 289/427 (67.68%), Postives = 316/427 (74.00%), Query Frame = 1
Query:  211 MAMLQQRLTALKAANDCHNFDSLAQHANATATSEVFSSTHLLGTIMSFAAPGAFLFVATVSRRVGAVAM-QVASVHGAGSVCVTGIDAALSSASRLALALVSTGFTDLVQLLSSNETRLPCPCGSLGKLESLQAVESMQLAGMHVCSEVLIGAAIKCNIGHLRSI---------------------------------------SAAESWPPHYFYVLCNAAAMFGHIGTLNFLLEHGRQLFSDQRLRLPTPDDASTWG-YKGAIVFTDAHGTDHALTLVDAAAMADDASVLRWLHARHPPLQFTRITMTLAAGCGGLPTMKWLRAQGCSHDINEVAKTLLQMRQGAATPPKMEWVRSCGGGDWSAQGMTDMLVEALTHSSPALARWLRAEGARWPTDLAEVVMTKPGPVEPRTLLWAVQQGCPFDL 1368
            M  LQQRLTALK A DCH+  S A HANATA SEVFSSTHLLG IMS+AAPG FLFVATVSRRVGAVA+ QVASVHGAG+VC T I AAL SASRLALAL STGF DLVQL   +ET   C C  LG+LES+QAVESMQ+AG+HVCS+VL+GAA KCNIG+L S+                                         AESWPP++FY+LCNAAA+ GHIGTL FLL  GR LFSDQRL  PT DDAS W  +KGA++ T A GTDH L+LVDAA    +  VLRWLHAR PPLQFT ITMT+AA  GGLPTMKWLRA GC HDINEVA+TLL    GAATPPKMEWVRSC GGDWS QGM+DMLV+AL HSSPALA WLRAEGARWP+ LAEVVMTKP  V  RTLLWAVQQGCPF L
Sbjct:    1 MVTLQQRLTALKDAVDCHDRASPAPHANATAASEVFSSTHLLGNIMSYAAPGDFLFVATVSRRVGAVAIAQVASVHGAGAVCTTKIYAALGSASRLALALESTGFADLVQLRDGHETA-DCLCERLGELESMQAVESMQVAGIHVCSDVLVGAATKCNIGYLHSLWCGPLGKPQLCRDICYAICAQTSGFGDDGAVLSWVAPQLPIAESWPPYFFYMLCNAAALSGHIGTLKFLLLRGRPLFSDQRL--PTLDDASMWANHKGALMCTVADGTDHVLSLVDAALRDKNVRVLRWLHARQPPLQFTDITMTVAALLGGLPTMKWLRAHGCPHDINEVARTLLLSCGGAATPPKMEWVRSCSGGDWSVQGMSDMLVQALAHSSPALACWLRAEGARWPSTLAEVVMTKP--VALRTLLWAVQQGCPFGL 422          
BLAST of jgi.p|Trimin1|347223 vs. uniprot
Match: A0A836CDR0_9STRA (GPS domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CDR0_9STRA)

HSP 1 Score: 486 bits (1251), Expect = 3.160e-163
Identity = 274/513 (53.41%), Postives = 338/513 (65.89%), Query Frame = 1
Query:   76 DLTDAAAELPLLEVEQDCIKAILRQLACDAADTAPVPGVATLNTAMAMLQQRLTALKAANDCHNFDSLAQHANATATSEVFSSTHLLGTIMSFAAPGAFLFVATVSRRVGAVAM-QVASVHGAGSVCVTGIDAALSSASRLALALVSTGFTDLVQLLSSNETRLPCPCGSLGKLESLQAVESMQLAGMHVCS-EVLIGAAIKCNIGHLRSI---------------------------------------SAAESWPPHYFYVLCNAAAMFGHIGTLNFLLEHGRQLFSDQR-------LRLPTPDDASTWGYKGAIVFTDAHGTDHALTLVDAAAMADDASVLRWLHARHPPLQFTRITMTLAAGCGGLPTMKWLRAQGCSHDINEVAKTLLQMRQGAATPPKMEWVRSCGGGDWSAQGMTDMLVEALTHSSPALARWLRAEGARWPTDLAEVVMTKPGPVEPRTLLWAVQQGCPFDLWTSEVCEVLSERSAEAAAVKLALHDLGCPCGCPR 1470
            DL DAA ELPL+EVEQ+ ++A+LRQLA DA++ AP+PGVA+L  AMA L +RL ++KAA D     S    A+   TSEV SST LLG+I+SF  PG FLF+ATVSRRVGAV +  VASV+GA S+ +T ++AAL+S SRLALA     FT +V L S     +P  C  LG++   QA+E+++  G++    +VL+GAA KCN+G ++S+                                        A  +WP +Y +VLCNAAAM+G + TL FL  HG  LF +QR       +     DD        + ++ DA  T H +TL+DAAAM+DDA+ L WL +R P L+FT +TM LAA  GGLPT+KWLRA  C HDIN +A  LL+     ATPPK+ WVRSCGGGDWSAQGMTDMLVEAL HS+PALA WLRAEGARWP DLAEVV TK   V PR LLWAVQQGCPF  W+SE+CEVLSE SA+AAAVKLALHDLGCPC CPR
Sbjct:  123 DLADAAVELPLIEVEQEGVQAMLRQLAPDASELAPIPGVASLYAAMATLDRRLASMKAAIDSREHASQRMRADTDVTSEVLSSTPLLGSILSFTGPGDFLFLATVSRRVGAVGIAHVASVYGADSLLMTELNAALTSTSRLALAQ-GDKFTHMVHLCSQQP--MPRACELLGEMGCAQAIEALREGGLYTGGGDVLVGAARKCNVGLVQSLWAGPLNKPELPEPICRAIGLQAAKRGDDGTVLSWLAPQLRAGTAWPAYYHHVLCNAAAMYGRLNTLEFLFAHGLTLFGEQRPVSLDDNVNAGADDDDRIVIAPPSAIYVDASATKHVVTLLDAAAMSDDAAALHWLQSRQP-LEFTGVTMQLAAQWGGLPTLKWLRAHECPHDINAIASILLKSHFVVATPPKLAWVRSCGGGDWSAQGMTDMLVEALAHSTPALAHWLRAEGARWPADLAEVVRTKVEVVRPRNLLWAVQQGCPFGRWSSEICEVLSEHSAQAAAVKLALHDLGCPCTCPR 631          
BLAST of jgi.p|Trimin1|347223 vs. uniprot
Match: A0A836CKN3_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CKN3_9STRA)

HSP 1 Score: 310 bits (793), Expect = 1.560e-96
Identity = 212/515 (41.17%), Postives = 260/515 (50.49%), Query Frame = 1
Query:   70 SGDLTDAAAELPLLEVEQDCIKAILRQLACDAADTAPVPGVATLNTAMAMLQQRLTALKAANDCHNFDSLAQHANATATSEVFSSTHLLGTIMSFAAPGAFLFVATVSRRVGAVAMQVASVHGAGSVCVTGIDAALSSASRLALALVSTGFTDLVQLLSSNETRLPCPCGSLGKLESLQAVESMQLAGMHVCSEVLIGAAIKCNIGHLRSI----------------------------------SAAE-----SWPPHYFYVLCNAAAMFGHIGTLNFLLEHGRQLF--------SDQRLRLPTPDDASTWGYKGAIVFTDAHGTDHALTLVDAAAMADDASVLRWLHARHPPLQFTRITMTLAAGCGGLPTMKWLRAQGCSHDINEVAKTLLQMRQGAATPPKMEWVRSCGGGDWSAQGMTDMLVEALTHSSPALARWLRAEGARWPTDLAEVVMTKPGPVEPRTLLWAVQQGCPFDLWTSEVCEVLSERSAEAAAVKLALHDLGCPCGCPRP 1473
            S DL  AAA+LP+   E   IK +LR L  DA   AP+ G+    T+ A L         A  C                                             R    A  VASV  A SV +T   AA  S SRL LAL+ST FTD +  LS       C   +LG+L SL+ V+ M  AG++V +EVLIGAA  CNI  L S+                                   AA+     +WP H+   +CN AAM+ +I TL FLL  G  LF        SD R  LP            A+VF D  GT+H LT+VDAAAMA + +VL+WLH++H   +FT ITM  AA    LP++KWL  QGC++DIN++ + +L       TPP + WVRS GGGDWS QGMTDML  AL  S+P LARWLR EGA WP +LA++V      V+P T+LWAVQ GCPF  WT+ VCE L   SA   AVK ALHDLGCPC CPRP
Sbjct:   21 SADLEAAAADLPVFTTEVQSIKVLLRHLYPDAVGAAPMRGLGLDITSSARL--------CARGCER-----------------------------------------CMRPVLYAACVASVRKATSVHLTKFSAAAVSQSRLNLALLSTKFTDALPTLSFPARYSLCL--ALGELGSLEVVQRMAQAGLNVGAEVLIGAADTCNIADLHSLWVGVLSQQDVDLEICIEIGVSLARFGDDGSCLSWLAAQLRRPSAWPAHFINEVCNLAAMWANIPTLQFLLARGPALFGTLGTLFLSDIRSTLPND----------ALVFVDLGGTEHVLTVVDAAAMAANPTVLQWLHSQHAA-EFTSITMQEAASNAVLPSLKWLHQQGCAYDINQILQLVLVSVY--VTPPAVAWVRSFGGGDWSPQGMTDMLATALLRSTPGLARWLRVEGAPWPQNLAQLVNRAGNYVKPLTILWAVQHGCPFGRWTTRVCERLESSSASGGAVKRALHDLGCPCACPRP 471          
BLAST of jgi.p|Trimin1|347223 vs. uniprot
Match: A0A836CE86_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CE86_9STRA)

HSP 1 Score: 306 bits (784), Expect = 2.870e-96
Identity = 171/337 (50.74%), Postives = 207/337 (61.42%), Query Frame = 1
Query:  493 LALALVSTGFTDLVQLLSSNETRLPCPCGSLGKLESLQAVESMQLAGMHVCSEVLIGAAIKCNIGHLRSISAA------------------------------------ESWPPHYFYVLCNAAAMFGHIGTLNFLLEHGRQLFSDQR-LRLPTPDD-ASTWGYK-GAIVFTDAHGTDHALTLVDAAAMADDASVLRWLHARHPPLQFTRITMTLAAGCGG-LPTMKWLRAQGCSHDINEVAKTLLQMRQGAATPPKMEWVRSCGGGDWSAQGMTDMLVEALTHSSPALARWLRAEGARWPTDLAEVVMTKPGPVEPRTLLWAVQQGCPFDLWTSEV 1383
            LALAL S GF++LVQ L +   +       LG+LES+QAVESM  AG  +  +VL GAA  CN GHL S+ A                                      +WPP+Y ++LCN AA+ G++ TL FL+  GR LF DQR L L    D A  W    G ++  D  G +H + LVDAAA   DA+VLRWLH+R P LQFT ITM +AA  GG LPT+KWL AQGC HDINEV + L++       PP +EWVRSCGGGDWSAQGMT MLVEAL H +P LARWLRAEGA+WP DL++VV+ K   V PR LLWA+QQGCPF  WT E+
Sbjct:    1 LALALDSAGFSELVQSLYA--IKGGTISSGLGQLESVQAVESMVRAGTRIAIDVLAGAAGTCNAGHLTSLWAGVLGRPPLPDDVCFEIGLQAAQWGDSISVLSWLAPQLPTWPPYYVHILCNVAAVHGYVDTLEFLMARGRWLFGDQRALTLSDLADLADRWRSDIGTLIHVDTDGDEHIVALVDAAAAFSDATVLRWLHSRQP-LQFTSITMKVAAARGGGLPTLKWLYAQGCPHDINEVCEGLMRCNLSGVAPPMLEWVRSCGGGDWSAQGMTSMLVEALAHMTPTLARWLRAEGAQWPADLSDVVVAKVDSVHPRNLLWAIQQGCPFGRWTFEL 334          
BLAST of jgi.p|Trimin1|347223 vs. uniprot
Match: A0A835ZG85_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZG85_9STRA)

HSP 1 Score: 303 bits (776), Expect = 5.060e-94
Identity = 203/477 (42.56%), Postives = 258/477 (54.09%), Query Frame = 1
Query:   76 DLTDAAAELPLLEVEQDCIKAILRQLACDAADTAPVPGVATLNTAMAMLQQRLTALKAANDCHNFDSLAQHANATATSEVFSSTHLLGTIMSFAAPGAFLFVATVSRRVGAVAMQVASVHGAGSVCVTGIDAALSSASRLALALVSTGFTDLVQLLSSNETRLPCPCGSLGKLESLQAVESMQLAGMHVCSEVLIGAAIKCNIGHLRSIS--AAE-----SWPPHYFYVLCNAAAMFGHIGTLNFLLE--HGRQLFSD-QRLRLPTPDDAS-TWGYKGAIVFTDAHGTDHALTLVDAAAMADDASVLRWLHARHPPLQFTRITMTLAAGCGGLPTMKWLRAQGCSHDINEVAKTLLQMRQGAATPPKMEWVRSCGGGDWSAQGMTDMLVEALTHSSPALARWLRAEGARWPTDLAEVVMTKPGPVEPRTLLWAVQQGCPFDLWTSEVCEVLSERSAEAAAVKLALHDLGCPCGCPRP 1473
            DL DAAAE+P L  E   I+A+LRQL  DAA   P+ G+A+L+TA+A L QRL AL+AA D     +        A + VF+S  LL  IM+FA  G FLFVA V    G +A+ +  VH A                         GF    +LL           GS+G L S+  V +           V +  A +   G   +++  AA+     SWP H+   LCN AA +G I TL FLL    G+ LF     L L      S +   + A+ +TD  G  H ++LVDAAA+   ASVL WL +  P   FT ITM  AA  G +P ++WLRA GC HDIN +   LL      ATPP MEWVR+C GGDWS +G+ DMLV AL   +P LARWLR +GA WP +LA +V    G V+   +LWAV++GCPF  W+SEVC VL+  S +A A K ALHDLGCPC CPRP
Sbjct:   36 DLADAAAEVPTLVAEHQSIRAVLRQLYPDAAGAPPLRGLASLSTAVAALDQRLAALQAALDSRGRPAQRARTGDAAVTLVFASGELLADIMAFAGRGEFLFVAPV----GTLAL-LQRVHAA-------------------------GFPVHEELLIG-----AARTGSVGHLHSVWGVLTDHEVETDTWCRVGLQLAKRGEEGSSAALAWLAAQRRPPLSWPAHFTNALCNTAARYGCITTLRFLLSPTQGQLLFGPLTALSLAYVKSRSCSSAMRDALRYTDITGKAHVMSLVDAAALGYCASVLAWLRSEQPNFNFTSITMEAAAYWGWMPALEWLRAHGCPHDINTICTALLH--SAIATPPHMEWVRACNGGDWSPRGVADMLVTALMCGTPTLARWLRQQGAPWPKNLAGIVKVLGGSVKVHMVLWAVREGCPFGRWSSEVCAVLT--SPQAMAAKHALHDLGCPCDCPRP 473          
BLAST of jgi.p|Trimin1|347223 vs. uniprot
Match: A0A835YMG8_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YMG8_9STRA)

HSP 1 Score: 298 bits (762), Expect = 4.360e-92
Identity = 200/501 (39.92%), Postives = 258/501 (51.50%), Query Frame = 1
Query:  109 LEVEQDCIKAILRQLACDAADTAPVPGVATLNTAMAMLQQRLTALK-AANDCHNFDSLAQHANATATSEVFSSTHLLGTIMSFAAPGAFLFVATVSRRVGAVAMQVASVHGAGSVCVTGIDAALSSASRLALALVSTGFTDLVQLLSSNETRLPCPCGS-LGKLESLQAVESMQLAGMHVCSEVLIGAAIKCNIGHLRSISA---------------------------------------AESWPPHYFYVLCNAAAMFGHIGTLNFLLEHGRQLFSDQRLRLPTPDDASTW-----GYKGAIVFTDAHGTDHALTLVDAAAMADDASVLRWLHARHPPLQFTRITMTLAAGCGGLPTMKWLRAQGCSHDINEVAKTLLQMRQGAATPPKMEWVRSCGGGDWSAQGMTDMLVEALTHSSPALARWLRAEGARWPTDLAEVVMTKPGPVEPRTLLWAVQQGCPFDLWTSEVCEVLSERSAEAAAVKLALHDLGCPCGCPRP 1473
            + V  + IK +LR L  DAA   P+ G+A+L+ A+  L QRL A++ A  D        +   ++A +EV ++  LL + +SF     +LF+A                                  SRL LALVS  FT    +LSS      C   S LG+  S++AVE MQ AG+ +  EVL GAA  C+   L+SI A                                       A++W P Y  +L N AA +G   TL FLL  G++LF      +   D  +TW        G   + D  G    +TL DAAA ADD +VLRWL +R   L FT ITM +AA    LP++ WLRAQGC HD+ +V + LL  R+  ATPP + WVR  G GDWS Q M  ML  A+ + +PALAR LRAEGA WP DLAE+V T+   V P+T+LWAVQQGCPF  WT+EVCE+L +      AVK ALHDLGCPC CPRP
Sbjct:    1 MAVAVESIKVVLRHLHPDAAGFTPMRGLASLSAALRTLDQRLAAVQEAVGDGRRRQ--YRRTESSAATEVLTNNELLASTLSFVGACEYLFIAP---------------------------------SRLNLALVSGEFT---YVLSSLRLTARCELSSALGEAGSVEAVERMQQAGLDIEEEVLNGAAKSCDSSSLQSIWAGPLGSQELDAPRCYEIGIRLAIFGDDGSALSWLAPQLPKAQAWSPCYINILSNYAAAWGRTSTLQFLLARGQELFGALGA-VSLADHENTWPLTDKDMDGVWTYRDEEGAKQVMTLTDAAAAADDTAVLRWLQSRRA-LAFTGITMQVAAANARLPSLTWLRAQGCPHDMAQVCRQLLGSRR--ATPPAVAWVRRYGTGDWSPQCMRGMLASAMLNGTPALARRLRAEGAPWPEDLAELVATEIEDVRPQTILWAVQQGCPFGRWTTEVCELLDDDREGGGAVKRALHDLGCPCACPRP 459          
BLAST of jgi.p|Trimin1|347223 vs. uniprot
Match: A0A835YSQ3_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YSQ3_9STRA)

HSP 1 Score: 276 bits (707), Expect = 2.760e-85
Identity = 140/254 (55.12%), Postives = 169/254 (66.54%), Query Frame = 1
Query:  712 ESWPPHYFYVLCNAAAMFGHIGTLNFLLEHGRQLFSDQRLRLPTPDDASTWGYKGAIVFTDAHGTDHALTLVDAAAMADDASVLRWLHARHPPLQFTRITMTLAAGCGGLPTMKWLRAQGCSHDINEVAKTLLQMRQGAATPPKMEWVRSCGGGDWSAQGMTDMLVEALTHSSPALARWLRAEGARWPTDLAEVVMTKPGPVEPRTLLWAVQQGCPFDLWTSEVCEVLSERSAEAAAVKLALHDLGCPCGCPRP 1473
            ESWP  Y   LCNAAA +G   TL+FLL  G+QLF    L   + DD        A++  D  GT+H  TL DAAA A   +VL+WL +RH  L+FT +TM +AA    LP MKWL+AQGC HDINEV   ++ MR G  T P ++WV+SCGGGDWS QGM  +L  AL++ +P L RWLRAEGARWP DLAEVV T+   V+P  +LWAVQQGCPF  WT+EVC+ L     + AAVK  LHDLGCPC CPRP
Sbjct:  104 ESWPARYINALCNAAAQWGRTSTLDFLLARGQQLFG--ALGTASLDDDEVRRASWALMCFDVEGTEHVRTLTDAAATAYSVAVLQWLQSRHA-LEFTGMTMLMAASNAALPNMKWLQAQGCPHDINEVC--IMLMRVGG-TEPLLDWVQSCGGGDWSPQGMARLLRSALSNDTPGLPRWLRAEGARWPEDLAEVVTTEIEEVKPSMILWAVQQGCPFGRWTTEVCDSLVRSHPDGAAVKRTLHDLGCPCACPRP 351          
BLAST of jgi.p|Trimin1|347223 vs. uniprot
Match: A0A835Z7G5_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z7G5_9STRA)

HSP 1 Score: 249 bits (637), Expect = 1.890e-76
Identity = 129/239 (53.97%), Postives = 158/239 (66.11%), Query Frame = 1
Query:  760 MFGHIGTLNFLLEHGRQLFSDQRLRLPTPDDASTWGYKGAIVFTDAHGTDHALTLVDAAAMADDASVLRWLHARHPPLQFTRITMTLAAGCGG-LPTMKWLRAQGCSHDINEVAKTLLQMRQGAATPPKMEWVRSCGGGDWSAQGMTDMLVEALTHSSPALARWLRAEGARWPTDLAEVVMTKPGPVEPRTLLWAVQQGCPFDLWTSEVCEVLSERSAEAAAVKLALHDLGCPCGCPRP 1473
            M+G I TL FLLE G+ LF          D      YK   +F D  GT HA TL D A MA+DA+VL+WL +R+  +QFT  TM +AA  G  L  +KWLRAQGC HDI+++ + +L        PP M WVRSCGGGDWS QGMTDML +AL +++PALARWLRAEGA+WP DLAEVV +K   +    +LWA+QQGCPF  WT++VC +L +      AVK ALHDLGCPC CPRP
Sbjct:    1 MWGQITTLQFLLEGGQALFGSLGT-FCLSDVKDDMQYKACCLFRDVDGTQHARTLSDTATMANDAAVLQWLQSRNA-VQFTSKTMLVAADGGAVLANLKWLRAQGCPHDIDKICQIVLDTPW--TPPPVMAWVRSCGGGDWSPQGMTDMLAKALLNNTPALARWLRAEGAQWPKDLAEVVTSKADILISSNILWALQQGCPFGRWTTQVCGLLEKSHDSGGAVKRALHDLGCPCACPRP 235          
BLAST of jgi.p|Trimin1|347223 vs. uniprot
Match: A0A835YI32_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YI32_9STRA)

HSP 1 Score: 245 bits (626), Expect = 1.930e-75
Identity = 117/170 (68.82%), Postives = 134/170 (78.82%), Query Frame = 1
Query:  880 IVFTDAHGTDHALTLVDAAAMADDASVLRWLHARHPPLQFTRITMTLAAGCGGLPTMKWLRAQGCSHDINEVAKTLLQMRQGAATPPKMEWVRSCGGGDWSAQGMTDMLVEALTHSSPALARWLRAEGARWPTDLAEVVMTKPGPVEPRTLLWAVQQGCPFDLWTSEVCE 1389
            +++ D  G  H +TLVDAAA  DDASVLRWLHAR P L+FT ITM LAA  GGLPT+KWLR+QGC HD+N++A+ LL+ R GAATPPK+ WVRSCGG DWSA+GMTDMLV AL H +PALARWLR EGARWP DL EVV T    ++   LLWAVQQGCPF  WTSEVCE
Sbjct:    1 MLYEDIKGARHVVTLVDAAAAFDDASVLRWLHARQP-LEFTDITMQLAARGGGLPTLKWLRSQGCPHDMNDIARVLLKSRHGAATPPKLAWVRSCGGCDWSARGMTDMLVAALAHGTPALARWLRVEGARWPADLTEVVKTNVKRIKTCNLLWAVQQGCPFGRWTSEVCE 169          
The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|347223 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 20
Match NameE-valueIdentityDescription
A0A835YR45_9STRA0.000e+0100.00Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A835YKQ3_9STRA1.500e-17867.68Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A836CDR0_9STRA3.160e-16353.41GPS domain-containing protein n=1 Tax=Tribonema mi... [more]
A0A836CKN3_9STRA1.560e-9641.17Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A836CE86_9STRA2.870e-9650.74Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A835ZG85_9STRA5.060e-9442.56Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A835YMG8_9STRA4.360e-9239.92Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A835YSQ3_9STRA2.760e-8555.12Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A835Z7G5_9STRA1.890e-7653.97Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A835YI32_9STRA1.930e-7568.82Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Contig_9contigContig_9:884295..887058 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Tribonema minus UTEX_B_31562021-06-17
Properties
Property NameValue
ProteomeIdTrimin1|347223|estExt_Genemark1.C_Ctg_90089
Hectar predicted targeting categoryother localisation
TranscriptId347545
TrackFilteredModels1
ProteinId347223
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|347223gene_3586Tribonema minus UTEX_B_3156 geneContig_9 884295..887058 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
exon_3586_3exon_3586_3Tribonema minus UTEX_B_3156 exonContig_9 884295..885149 -
exon_3586_2exon_3586_2Tribonema minus UTEX_B_3156 exonContig_9 885680..886312 -
exon_3586_1exon_3586_1Tribonema minus UTEX_B_3156 exonContig_9 886983..887058 -


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
UTR3_3586UTR3_3586Tribonema minus UTEX_B_3156 three_prime_UTRContig_9 884295..884382 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
CDS_3586CDS_3586Tribonema minus UTEX_B_3156 CDSContig_9 886983..887058 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|347223Trimin1|347223|estExt_Genemark1.C_Ctg_90089Tribonema minus UTEX_B_3156 polypeptideContig_9 884383..887058 -


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>mRNA_3586 ID=mRNA_3586|Name=jgi.p|Trimin1|347223|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=1564bp|location=Sequence derived from alignment at Contig_9:884295..887058- (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon.  
ATGCTGTACACGTACTGCACACCCTCCATGCTCACTAAAGCCCCCCCCAA
GACGCCACCCCCCCAGAATTCTGGAGATCTGACCGATGCTGCGGCAGAGC
TGCCCCTCCTGGAGGTCGAACAGGACTGCATCAAGGCCATTCTGCGGCAG
CTGGCGTGCGATGCTGCTGACACGGCGCCTGTCCCAGGTGTGGCCACCTT
GAATACTGCGATGGCGATGCTTCAGCAGCGCCTCACCGCCTTGAAAGCTG
CAAACGACTGCCACAATTTTGACAGCCTGGCGCAGCATGCAAATGCCACA
GCGACGTCGGAGGTATTCAGCAGCACGCACCTGCTCGGCACCATTATGTC
ATTTGCGGCCCCGGGTGCTTTCCTGTTCGTCGCCACGGTCAGCAGGAGGG
TGGGGGCCGTAGCCATGCAAGTCGCGTCCGTCCATGGAGCCGGCTCGGTG
TGCGTGACGGGAATCGATGCTGCGCTGTCGTCCGCTTCGAGGCTCGCGCT
CGCGCTGGTCAGCACCGGGTTTACCGATCTCGTTCAGCTGCTCAGCAGTA
ATGAGACAAGGTTGCCGTGCCCCTGCGGAAGCCTCGGAAAGCTGGAGTCC
CTGCAGGCGGTTGAGAGCATGCAGCTCGCAGGGATGCATGTTTGCAGCGA
GGTGCTCATAGGCGCGGCAATCAAGTGCAACATCGGCCACCTGCGTTCAA
TCTCGGCAGCCGAGTCATGGCCACCCCACTACTTCTACGTGCTCTGCAAC
GCGGCTGCCATGTTCGGCCATATTGGCACCCTCAACTTCCTACTGGAGCA
TGGCCGGCAGCTGTTCAGCGATCAACGCCTTCGCCTTCCAACCCCGGATG
ACGCGAGCACGTGGGGGTACAAGGGGGCGATCGTGTTCACAGACGCACAT
GGCACCGACCACGCCTTGACTCTGGTGGATGCAGCGGCCATGGCCGACGA
CGCCAGCGTGCTCCGCTGGCTGCATGCGCGGCACCCACCCCTTCAATTCA
CCCGCATTACCATGACGTTGGCGGCTGGGTGCGGAGGGCTGCCCACGATG
AAGTGGCTGCGTGCACAGGGGTGCTCTCACGACATCAACGAGGTCGCCAA
GACCCTGCTGCAGATGCGCCAAGGCGCAGCAACGCCGCCAAAAATGGAGT
GGGTCAGGAGCTGCGGCGGAGGCGACTGGAGCGCGCAGGGGATGACGGAC
ATGCTGGTGGAGGCGTTGACGCACAGCTCTCCCGCTCTCGCCCGCTGGCT
GCGCGCGGAAGGCGCTCGCTGGCCGACGGACCTGGCGGAGGTCGTGATGA
CCAAGCCCGGCCCGGTGGAACCGCGCACCTTGCTCTGGGCGGTGCAGCAG
GGCTGCCCTTTTGACCTGTGGACCAGCGAGGTGTGCGAGGTGTTGAGCGA
GCGCTCGGCAGAGGCAGCTGCCGTCAAGCTTGCGCTGCACGACCTCGGCT
GCCCCTGCGGCTGTCCGCGCCCGTAGAGTACACTCCTGGAGTTGAAGCGC
TAGAGCGGGGTCGCATTGCGCCGGTATGAGCGCACGGCATAAGAAAGGTC
TACTCAGATTTCAC
back to top

protein sequence of jgi.p|Trimin1|347223

>Trimin1|347223|estExt_Genemark1.C_Ctg_90089 ID=Trimin1|347223|estExt_Genemark1.C_Ctg_90089|Name=jgi.p|Trimin1|347223|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=492bp
MLYTYCTPSMLTKAPPKTPPPQNSGDLTDAAAELPLLEVEQDCIKAILRQ
LACDAADTAPVPGVATLNTAMAMLQQRLTALKAANDCHNFDSLAQHANAT
ATSEVFSSTHLLGTIMSFAAPGAFLFVATVSRRVGAVAMQVASVHGAGSV
CVTGIDAALSSASRLALALVSTGFTDLVQLLSSNETRLPCPCGSLGKLES
LQAVESMQLAGMHVCSEVLIGAAIKCNIGHLRSISAAESWPPHYFYVLCN
AAAMFGHIGTLNFLLEHGRQLFSDQRLRLPTPDDASTWGYKGAIVFTDAH
GTDHALTLVDAAAMADDASVLRWLHARHPPLQFTRITMTLAAGCGGLPTM
KWLRAQGCSHDINEVAKTLLQMRQGAATPPKMEWVRSCGGGDWSAQGMTD
MLVEALTHSSPALARWLRAEGARWPTDLAEVVMTKPGPVEPRTLLWAVQQ
GCPFDLWTSEVCEVLSERSAEAAAVKLALHDLGCPCGCPRP*
back to top

mRNA from alignment at Contig_9:884295..887058-

Legend: polypeptideexonCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_3586 ID=mRNA_3586|Name=jgi.p|Trimin1|347223|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=2764bp|location=Sequence derived from alignment at Contig_9:884295..887058- (Tribonema minus UTEX_B_3156 )
ATGCTGTACACGTACTGCACACCCTCCATGCTCACTAAAGCCCCCCCCAA GACGCCACCCCCCCAGAATTCTGGAGGTGAGCGCGAGAAGACCCATATAC ATTAGATGGTTGTTCAGAAAGCAACCACAAGTGCCCCATCAGCTGCTGTG TAGGCTCCTTGTGTTTCAAGTGATACTTCAATCGTGCACTGTTTATCATC CACGAATCATTGTGCCTGATCCTGTGAGGGTTTTGGCAACTCGTGCCTTA ACTGATTAAAGTGATCAAGCTTGACTATGTGTTGGTGGACATGCGCCGTC AACAATTCTGCTACTACAGTCCTGTACAGCCGACCAACTTCCACTTGACT TCACCTGTTGAAGTGTTGACGAAGCAGAAGAAGAAGTGTGGAGTTTTTGA GTTCGGCAGCATGGCAGAAGGTGTGGAGCATCGTCAGCATGTGCTGTCAT CGGCGTTGATGCGCTTTGACAGGCTCATCAGCAGGCGATGGTTGACTTCC AAGTTTGATCCAGCCAATGCGTCGCCACAAGGTATGTGCTCGCAACATGA CCGGCTGCTTCAGATCATAGGCAATGCAATGGGGGCGCCTCACTCAGAGA TCACACAGCTGCCCTAGATGAGTGTGGTTCAGTCATGTCGAGGCTCGTTC CACCTCGCGTTTTGCATTCACAGCTGCCAAGTTCAATGCACTTGAGCCTG GCAAGCCACCCGGCACTCAATGCCTCGCCCTGCGCTCTGCCTGCAGATCT GACCGATGCTGCGGCAGAGCTGCCCCTCCTGGAGGTCGAACAGGACTGCA TCAAGGCCATTCTGCGGCAGCTGGCGTGCGATGCTGCTGACACGGCGCCT GTCCCAGGTGTGGCCACCTTGAATACTGCGATGGCGATGCTTCAGCAGCG CCTCACCGCCTTGAAAGCTGCAAACGACTGCCACAATTTTGACAGCCTGG CGCAGCATGCAAATGCCACAGCGACGTCGGAGGTATTCAGCAGCACGCAC CTGCTCGGCACCATTATGTCATTTGCGGCCCCGGGTGCTTTCCTGTTCGT CGCCACGGTCAGCAGGAGGGTGGGGGCCGTAGCCATGCAAGTCGCGTCCG TCCATGGAGCCGGCTCGGTGTGCGTGACGGGAATCGATGCTGCGCTGTCG TCCGCTTCGAGGCTCGCGCTCGCGCTGGTCAGCACCGGGTTTACCGATCT CGTTCAGCTGCTCAGCAGTAATGAGACAAGGTTGCCGTGCCCCTGCGGAA GCCTCGGAAAGCTGGAGTCCCTGCAGGCGGTTGAGAGCATGCAGCTCGCA GGGATGCATGTTTGCAGCGAGGTGCTCATAGGCGCGGCAATCAAGTGCAA CATCGGCCACCTGCGTTCAATCTCGGCAGGTCCGCTCGGCAAGCCTCAGC TGTCCAGTAGTGTGTGCTACAGGAGAGAATTTTTTGGAGCAATCCCCGGA TACTAAAAGGCACCACAGGACATCAATGCAATGATCGAGTTGAAGATCGC ACAATCATTTGACTGAACAGCAACAGTTCGCTTCAGGATGCTGTACGGAC GGTGATGCAACCGTCAAACTTCAAATTGAAGATGATGGTCAATACTGAGC GTGACAGTTGATGTTAAACTTCAACTTGAAGTTGTACTTCAATTACAGTA GCGTCTCGAGTCAAGTTTGTCCAATTTGAAGTTTGAAGATTGCACCATCA TCCGCAGAGCGAGCTGAAGCGAACTGTTGATGTTCGGTCAAATGGTTGTG CAATCTTCAACTTGATCATTGCATTAATGTCCTGTGGTGCCTTTTAGTAT CCAGGGATTGCCCCAAATAATTCTCTCCTCTACGCGATTGGGCTGGAGAC TGCCAATTTCGGCGACGATGGCACAGTGCTGTCGTGGGTTGCGCCGCATT TTCCCCTAGCCGAGTCATGGCCACCCCACTACTTCTACGTGCTCTGCAAC GCGGCTGCCATGTTCGGCCATATTGGCACCCTCAACTTCCTACTGGAGCA TGGCCGGCAGCTGTTCAGCGATCAACGCCTTCGCCTTCCAACCCCGGATG ACGCGAGCACGTGGGGGTACAAGGGGGCGATCGTGTTCACAGACGCACAT GGCACCGACCACGCCTTGACTCTGGTGGATGCAGCGGCCATGGCCGACGA CGCCAGCGTGCTCCGCTGGCTGCATGCGCGGCACCCACCCCTTCAATTCA CCCGCATTACCATGACGTTGGCGGCTGGGTGCGGAGGGCTGCCCACGATG AAGTGGCTGCGTGCACAGGGGTGCTCTCACGACATCAACGAGGTCGCCAA GACCCTGCTGCAGATGCGCCAAGGCGCAGCAACGCCGCCAAAAATGGAGT GGGTCAGGAGCTGCGGCGGAGGCGACTGGAGCGCGCAGGGGATGACGGAC ATGCTGGTGGAGGCGTTGACGCACAGCTCTCCCGCTCTCGCCCGCTGGCT GCGCGCGGAAGGCGCTCGCTGGCCGACGGACCTGGCGGAGGTCGTGATGA CCAAGCCCGGCCCGGTGGAACCGCGCACCTTGCTCTGGGCGGTGCAGCAG GGCTGCCCTTTTGACCTGTGGACCAGCGAGGTGTGCGAGGTGTTGAGCGA GCGCTCGGCAGAGGCAGCTGCCGTCAAGCTTGCGCTGCACGACCTCGGCT GCCCCTGCGGCTGTCCGCGCCCGTAGAGTACACTCCTGGAGTTGAAGCGC TAGAGCGGGGTCGCATTGCGCCGGTATGAGCGCACGGCATAAGAAAGGTC TACTCAGATTTCAC
back to top

Coding sequence (CDS) from alignment at Contig_9:884295..887058-

>mRNA_3586 ID=mRNA_3586|Name=jgi.p|Trimin1|347223|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=1476bp|location=Sequence derived from alignment at Contig_9:884295..887058- (Tribonema minus UTEX_B_3156 )
ATGCTGTACACGTACTGCACACCCTCCATGCTCACTAAAGCCCCCCCCAA
GACGCCACCCCCCCAGAATTCTGGAGATCTGACCGATGCTGCGGCAGAGC
TGCCCCTCCTGGAGGTCGAACAGGACTGCATCAAGGCCATTCTGCGGCAG
CTGGCGTGCGATGCTGCTGACACGGCGCCTGTCCCAGGTGTGGCCACCTT
GAATACTGCGATGGCGATGCTTCAGCAGCGCCTCACCGCCTTGAAAGCTG
CAAACGACTGCCACAATTTTGACAGCCTGGCGCAGCATGCAAATGCCACA
GCGACGTCGGAGGTATTCAGCAGCACGCACCTGCTCGGCACCATTATGTC
ATTTGCGGCCCCGGGTGCTTTCCTGTTCGTCGCCACGGTCAGCAGGAGGG
TGGGGGCCGTAGCCATGCAAGTCGCGTCCGTCCATGGAGCCGGCTCGGTG
TGCGTGACGGGAATCGATGCTGCGCTGTCGTCCGCTTCGAGGCTCGCGCT
CGCGCTGGTCAGCACCGGGTTTACCGATCTCGTTCAGCTGCTCAGCAGTA
ATGAGACAAGGTTGCCGTGCCCCTGCGGAAGCCTCGGAAAGCTGGAGTCC
CTGCAGGCGGTTGAGAGCATGCAGCTCGCAGGGATGCATGTTTGCAGCGA
GGTGCTCATAGGCGCGGCAATCAAGTGCAACATCGGCCACCTGCGTTCAA
TCTCGGCAGCCGAGTCATGGCCACCCCACTACTTCTACGTGCTCTGCAAC
GCGGCTGCCATGTTCGGCCATATTGGCACCCTCAACTTCCTACTGGAGCA
TGGCCGGCAGCTGTTCAGCGATCAACGCCTTCGCCTTCCAACCCCGGATG
ACGCGAGCACGTGGGGGTACAAGGGGGCGATCGTGTTCACAGACGCACAT
GGCACCGACCACGCCTTGACTCTGGTGGATGCAGCGGCCATGGCCGACGA
CGCCAGCGTGCTCCGCTGGCTGCATGCGCGGCACCCACCCCTTCAATTCA
CCCGCATTACCATGACGTTGGCGGCTGGGTGCGGAGGGCTGCCCACGATG
AAGTGGCTGCGTGCACAGGGGTGCTCTCACGACATCAACGAGGTCGCCAA
GACCCTGCTGCAGATGCGCCAAGGCGCAGCAACGCCGCCAAAAATGGAGT
GGGTCAGGAGCTGCGGCGGAGGCGACTGGAGCGCGCAGGGGATGACGGAC
ATGCTGGTGGAGGCGTTGACGCACAGCTCTCCCGCTCTCGCCCGCTGGCT
GCGCGCGGAAGGCGCTCGCTGGCCGACGGACCTGGCGGAGGTCGTGATGA
CCAAGCCCGGCCCGGTGGAACCGCGCACCTTGCTCTGGGCGGTGCAGCAG
GGCTGCCCTTTTGACCTGTGGACCAGCGAGGTGTGCGAGGTGTTGAGCGA
GCGCTCGGCAGAGGCAGCTGCCGTCAAGCTTGCGCTGCACGACCTCGGCT
GCCCCTGCGGCTGTCCGCGCCCGTAG
back to top