mRNA_3558 (mRNA) Tribonema minus UTEX_B_3156

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
Namejgi.p|Trimin1|347207
Unique NamemRNA_3558
TypemRNA
OrganismTribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Homology
[Close]
BLAST of jgi.p|Trimin1|347207 vs. uniprot
Match: A0A836C8D6_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836C8D6_9STRA)

HSP 1 Score: 259 bits (662), Expect = 4.800e-87
Identity = 122/122 (100.00%), Postives = 122/122 (100.00%), Query Frame = 2 
Query:   71 MERWNTTGARYACKWWPFAGAPWADMCRRSTQKPRRSARQHQHTITMCSRRRIPQRLVTRWCCAMPCIGVTTAVMVTELPRPTASPSRHESNNLEAKAQRQHDGWGMVAGLLQRTDAKRFRT 436
            MERWNTTGARYACKWWPFAGAPWADMCRRSTQKPRRSARQHQHTITMCSRRRIPQRLVTRWCCAMPCIGVTTAVMVTELPRPTASPSRHESNNLEAKAQRQHDGWGMVAGLLQRTDAKRFRT
Sbjct:    1 MERWNTTGARYACKWWPFAGAPWADMCRRSTQKPRRSARQHQHTITMCSRRRIPQRLVTRWCCAMPCIGVTTAVMVTELPRPTASPSRHESNNLEAKAQRQHDGWGMVAGLLQRTDAKRFRT 122
The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|347207 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A836C8D6_9STRA4.800e-87100.00Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Contig_9contigContig_9:663088..665364 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Tribonema minus UTEX_B_31562021-06-17
Properties
Property NameValue
ProteomeIdTrimin1|347207|estExt_Genemark1.C_Ctg_90061
Hectar predicted targeting categorysignal anchor
TranscriptId347529
TrackFilteredModels1
ProteinId347207
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|347207gene_3558Tribonema minus UTEX_B_3156 geneContig_9 663088..665364 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|347207Trimin1|347207|estExt_Genemark1.C_Ctg_90061Tribonema minus UTEX_B_3156 polypeptideContig_9 663153..663600 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
exon_3558_3exon_3558_3Tribonema minus UTEX_B_3156 exonContig_9 663088..663500 -
exon_3558_2exon_3558_2Tribonema minus UTEX_B_3156 exonContig_9 663580..663622 -
exon_3558_1exon_3558_1Tribonema minus UTEX_B_3156 exonContig_9 665317..665364 -


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
UTR3_3558UTR3_3558Tribonema minus UTEX_B_3156 three_prime_UTRContig_9 663088..663152 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
CDS_3558CDS_3558Tribonema minus UTEX_B_3156 CDSContig_9 663580..663600 -


The following five_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
UTR5_3558UTR5_3558Tribonema minus UTEX_B_3156 five_prime_UTRContig_9 665317..665364 -


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>mRNA_3558 ID=mRNA_3558|Name=jgi.p|Trimin1|347207|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=504bp|location=Sequence derived from alignment at Contig_9:663088..665364- (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon.  
ATGTCCATCCTGCGACTCCCCGGCGGCCCGGCGGATCCCCTATTTCAGTA
CAAGGCGCAGGAAAACGCCGATGGAAAGGTGGAACACGACGGGCGCGCGC
TACGCCTGCAAATGGTGGCCATTCGCAGGAGCGCCATGGGCAGATATGTG
CCGGAGGTCCACGCAGAAGCCGCGCCGTAGCGCGCGGCAGCACCAGCACA
CCATCACCATGTGCAGCCGGAGGCGGATACCGCAGCGTTTGGTCACTCGA
TGGTGCTGCGCTATGCCGTGCATTGGCGTGACCACGGCTGTAATGGTAAC
TGAGCTGCCGCGGCCGACGGCGAGTCCGTCACGCCATGAGAGCAACAACT
TGGAAGCTAAAGCGCAGCGACAGCATGACGGGTGGGGTATGGTGGCGGGC
CTGCTGCAAAGAACAGACGCAAAGCGCTTCCGCACCTAGCCACGTGTAGG
AGAACAAGCACGCTGCAAGAAGCTGGTGTTCCGCACCCCCGCAACCTACG
CGCC
back to top

protein sequence of jgi.p|Trimin1|347207

>Trimin1|347207|estExt_Genemark1.C_Ctg_90061 ID=Trimin1|347207|estExt_Genemark1.C_Ctg_90061|Name=jgi.p|Trimin1|347207|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=123bp
MERWNTTGARYACKWWPFAGAPWADMCRRSTQKPRRSARQHQHTITMCSR
RRIPQRLVTRWCCAMPCIGVTTAVMVTELPRPTASPSRHESNNLEAKAQR
QHDGWGMVAGLLQRTDAKRFRT*
back to top

mRNA from alignment at Contig_9:663088..665364-

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_3558 ID=mRNA_3558|Name=jgi.p|Trimin1|347207|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=2277bp|location=Sequence derived from alignment at Contig_9:663088..665364- (Tribonema minus UTEX_B_3156 )
ATGTCCATCCTGCGACTCCCCGGCGGCCCGGCGGATCCCCTATTTCAGGT
CCCGTTTTTTTTTCAATTCAAATCCAAGGCTTGCCAACCACCTTCACTGA
GGCACTTACCATATTATGGACTAGTCCCAGCATACCATTCAGTGCGTGTT
TGCAGCTGTGCGCCCAGGTGTTTTCGATACAACGCATCGCATTTTCAACT
TGTCGGCTCTGATCCTCAAACGTATCAAGCTCAAGCCTGTAGCAAAATGT
ACAAGTAGGTGATTAACCAATAGGTGGAGTTTTTAAATACACTGGCAATG
TGCAGTTTTCACACCGGTTTCTTGATGTTATCCTGCGCGTTTGCACTTTC
TATGAATTCTCACTCAGGGCGCATTTGTACTTTTTATTAATTCTCGCTCA
GGGCGCGAAAAAGCCCAGATGATGGTCTAAATTGATGCTGCTGTACGGAA
TCTGTGTGTCGTGTGACTTTTGAACGTGTCTCAACGACAACCACTCAAAC
GGCGCCGCCGCCAAATGGCATCTCGGGACTTTTCATGGAAATCCACTGGG
CGGATATTCAAATGCTTCATGATTGCAATGAACCCCGCTGTGCGCTCTTG
AAACCTGTACGGTGGGCACAGGAGCTTGTCCGGTTTCGTTCTCAATGGAG
TGAGCGCATTATTGGCCTGACATTGCTGAACGTCACGACTTCATGGGAGG
TGTCCGCAAGATGAAAGCGTTGCACTGCATTTCAGCTGGGCCCCGCAATC
GGGCGCTGTGCGCGCCCAGGTGTTGTCGACGCAACGCATCTCGGTGTCGT
ACAGGTACCGAGATGCGTTGCATCGGCAACACCTGGGCGCACAGCTGAAT
TGAAGCTGTTTTACACCTCCGAGTCGCTGCTGTCTAGCCCTGGACAGCTG
TGTGGAGCGGGCAGTGCTCAGCACGCCAGACCGCCAAGAAGAACCACTTA
TTCGCGTCAGTTTGTCGCGAATTGCTCTCCACTCGCCACAGCGGCATTTG
GTCACCGGTGTCTTAGGTGTGATTGGCGGTGAAGCGCATTGACGATCAGT
CCTAGATGGCATCGTCAAATGGCGTCCCCCCCCCCACACTACGTCCTCCA
ACACGTCGTGCGTTTGAGTCACTACTGTGATATTAGAAGTCAAACCTTTC
TCTTTGCAAGTGCTGTAGTCGCAAGAGAAAAACAATACAGTGCAGGCGTC
CATATCAATTCGTTTGTGCAAAACAAATTCTGCAACGGCAGCATGTTGTT
GCAGACGTTGTGACCAATAGCAAGCCTCAACCCGCATTGCGTAATGCCCA
CAAGGTTGAGATTGTTGACAGAGGGGATCTGAGCAGGTGTGTACAGCAAC
TGTCACTCCATTGTGCCAATGATGCTGAAAGGGCATCAGGCACAGCTACA
CCCCCCCCCCCCCCCACGTACAGTGCCAGCCTGAGGGTTTCTGCAAGCTG
TCACGCGCTAAAGCAGCGGACGATACGCAGTGATTGTCTGGCGCAGCAGG
CATGCACATCGCTCCCGCCGACGCACGTGTGCGCCGCTGCTGCTTGCATC
ACGCGCTGGCACATGCGCGTACCAACGCTTGGCGTATGGAATGGCTGTAC
CTACATAAATATACAGTTGGCTGTTGGAAAGTGCCCATTGGCAATCATTG
CCCTACTGAAGGCCTCCATGATGACTAGTTCACCGCAAACGCATGCGCGG
ATACCAACATGAAAGGGACTCTCCCCCCCCCCCCTCCTCAAGTACAAGGC
GCAGGAAAACGCCGATGGAAAGGTGGAACACGACGGTGCAATGAAAGGGA
CGGCATCATGGATAGTACATGCGCACGTGCGAAAGCCTGAATGCTGAGCG
CTGCTGCCTCCAAGGGCGCGCGCTACGCCTGCAAATGGTGGCCATTCGCA
GGAGCGCCATGGGCAGATATGTGCCGGAGGTCCACGCAGAAGCCGCGCCG
TAGCGCGCGGCAGCACCAGCACACCATCACCATGTGCAGCCGGAGGCGGA
TACCGCAGCGTTTGGTCACTCGATGGTGCTGCGCTATGCCGTGCATTGGC
GTGACCACGGCTGTAATGGTAACTGAGCTGCCGCGGCCGACGGCGAGTCC
GTCACGCCATGAGAGCAACAACTTGGAAGCTAAAGCGCAGCGACAGCATG
ACGGGTGGGGTATGGTGGCGGGCCTGCTGCAAAGAACAGACGCAAAGCGC
TTCCGCACCTAGCCACGTGTAGGAGAACAAGCACGCTGCAAGAAGCTGGT
GTTCCGCACCCCCGCAACCTACGCGCC
back to top

Coding sequence (CDS) from alignment at Contig_9:663088..665364-

>mRNA_3558 ID=mRNA_3558|Name=jgi.p|Trimin1|347207|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=369bp|location=Sequence derived from alignment at Contig_9:663088..665364- (Tribonema minus UTEX_B_3156 )
ATGGAAAGGTGGAACACGACGGGCGCGCGCTACGCCTGCAAATGGTGGCC
ATTCGCAGGAGCGCCATGGGCAGATATGTGCCGGAGGTCCACGCAGAAGC
CGCGCCGTAGCGCGCGGCAGCACCAGCACACCATCACCATGTGCAGCCGG
AGGCGGATACCGCAGCGTTTGGTCACTCGATGGTGCTGCGCTATGCCGTG
CATTGGCGTGACCACGGCTGTAATGGTAACTGAGCTGCCGCGGCCGACGG
CGAGTCCGTCACGCCATGAGAGCAACAACTTGGAAGCTAAAGCGCAGCGA
CAGCATGACGGGTGGGGTATGGTGGCGGGCCTGCTGCAAAGAACAGACGC
AAAGCGCTTCCGCACCTAG
back to top