mRNA_3550 (mRNA) Tribonema minus UTEX_B_3156

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
Namejgi.p|Trimin1|159407
Unique NamemRNA_3550
TypemRNA
OrganismTribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Homology
BLAST of jgi.p|Trimin1|159407 vs. uniprot
Match: A0A835YI61_9STRA (Histone acetyltransferase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YI61_9STRA)

HSP 1 Score: 273 bits (698), Expect = 5.880e-93
Identity = 133/133 (100.00%), Postives = 133/133 (100.00%), Query Frame = 1
Query:    1 EGDLSVRVLASGTRTCDVPIIIQHMFRAGLGADLPCTISYTIKAIGLFARIDGVDVCVVMLYAYEYGPSAPARNAKSVYAAYVDSVEYVYPDAVRSHIYQEVIGVYLEHTRRVRCETAYLWSAPAWQAVSYVW 399
            EGDLSVRVLASGTRTCDVPIIIQHMFRAGLGADLPCTISYTIKAIGLFARIDGVDVCVVMLYAYEYGPSAPARNAKSVYAAYVDSVEYVYPDAVRSHIYQEVIGVYLEHTRRVRCETAYLWSAPAWQAVSYVW
Sbjct:    1 EGDLSVRVLASGTRTCDVPIIIQHMFRAGLGADLPCTISYTIKAIGLFARIDGVDVCVVMLYAYEYGPSAPARNAKSVYAAYVDSVEYVYPDAVRSHIYQEVIGVYLEHTRRVRCETAYLWSAPAWQAVSYVW 133          
BLAST of jgi.p|Trimin1|159407 vs. uniprot
Match: A0A835YHF1_9STRA (Histone acetyltransferase (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YHF1_9STRA)

HSP 1 Score: 199 bits (506), Expect = 1.040e-59
Identity = 100/132 (75.76%), Postives = 107/132 (81.06%), Query Frame = 1
Query:    4 GDLSVRVLASGTRTCDVPIIIQHMFRAGLGADLPCTISYTIKAIGLFARIDGVDVCVVMLYAYEYGPSAPARNAKSVYAAYVDSVEYVYPDAVRSHIYQEVIGVYLEHTRRVRCETAYLWSAPAWQAVSYVW 399
            GDLSVRVLASG +  DVPIII HMFRAG G DLP    YT+KAIGL ARIDGVDVCV+++Y YEYG  APA N KSVY AYVDSVEYVYPDAVRS +YQEVIG YLEH RR+  ETAYLWSAPA Q  SYVW
Sbjct:  275 GDLSVRVLASGNKIYDVPIIIWHMFRAGPGDDLPPAFDYTVKAIGLCARIDGVDVCVLIVYVYEYGADAPACNRKSVYVAYVDSVEYVYPDAVRSQLYQEVIGAYLEHARRLGFETAYLWSAPARQVGSYVW 406          
BLAST of jgi.p|Trimin1|159407 vs. uniprot
Match: A0A836C832_9STRA (Histone acetyltransferase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836C832_9STRA)

HSP 1 Score: 161 bits (407), Expect = 2.770e-43
Identity = 78/118 (66.10%), Postives = 93/118 (78.81%), Query Frame = 1
Query:   49 DVPIIIQHMFRAGLGADLPCTISYTIKAIGLFARIDGVDVCVVMLYAYEYGPSAPARNAKSVYAAYVDSVEYVYPDAVRSHIYQEVIGVYLEHTRRVRCETAYLWSAPAWQA-VSYVW 399
            DVP II+  FRAG GA+LP  I Y IKAIGLFA IDGVDVCV+M+Y YEYGP APA NA+SVY AYVDS+EY+YP AVRS +YQE+I  YLEH R +  +TAYLWS+P   A ++Y+W
Sbjct:  788 DVPAIIRRAFRAGPGAELPPAIDYIIKAIGLFALIDGVDVCVLMVYVYEYGPDAPACNARSVYIAYVDSIEYLYPGAVRSQLYQELIAAYLEHARLLGYDTAYLWSSPPQMASINYIW 905          
BLAST of jgi.p|Trimin1|159407 vs. uniprot
Match: A0A836C8R2_9STRA (Histone acetyltransferase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836C8R2_9STRA)

HSP 1 Score: 139 bits (351), Expect = 9.580e-36
Identity = 70/91 (76.92%), Postives = 77/91 (84.62%), Query Frame = 1
Query:    7 DLSVRVLASGTRTCDVPIIIQHMFRAGLGADLPCTISYTIKAIGLFARIDGVDVCVVMLYAYEYGPSAPARNAKSVYAAYVDSVEYVYPDA 279
            DLSVRVLASGT T +VP+IIQ  FRAG GADLP  I Y IKAIGLFA IDGVDVCV+M+Y YEYGP+AP+ NAKSVY AYVDSVEY+YP A
Sbjct:  652 DLSVRVLASGTATHNVPLIIQRAFRAGPGADLPPAIDYIIKAIGLFALIDGVDVCVLMVYVYEYGPNAPSCNAKSVYVAYVDSVEYLYPGA 742          
BLAST of jgi.p|Trimin1|159407 vs. uniprot
Match: A0A835ZGH1_9STRA (Histone acetyltransferase (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZGH1_9STRA)

HSP 1 Score: 113 bits (282), Expect = 1.830e-26
Identity = 55/135 (40.74%), Postives = 85/135 (62.96%), Query Frame = 1
Query:    4 GDLSVRVLASGTRTCDVPIIIQHMFRAGLGAD----LPCTISYTIKAIGLFARIDGVDVCVVMLYAYEYGPSAPARNAKSVYAAYVDSVEYVYPDAVRSHIYQEVIGVYLEHTRRVRCETAYLWSAPAWQAVSYV 396
            G +S+RV++S T T DV  +++  F+ G GA     +P  +SY  KA+ +F  IDG +VC+  +Y  E+G  AP+ NA+ VY AY+DSVEY  P A R+H+Y E++  YL+  RR    TA++WS P  +  +++
Sbjct:  432 GSISIRVVSSITATHDVSSVVRRTFKPGGGAPPGACIPRELSYASKALCMFQCIDGAEVCLFSMYVQEHGADAPSFNARRVYVAYLDSVEYFRPRAARTHVYHEILAAYLDWARRRGFRTAHIWSCPPQRGNNFI 566          
BLAST of jgi.p|Trimin1|159407 vs. uniprot
Match: A0A6H5L4V8_9PHAE (Histone acetyltransferase n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L4V8_9PHAE)

HSP 1 Score: 97.4 bits (241), Expect = 6.630e-21
Identity = 48/136 (35.29%), Postives = 82/136 (60.29%), Query Frame = 1
Query:   10 LSVRVLASGTRTCDVPIIIQHMF--RAGLGA-----DLPCTISYTIKAIGLFARIDGVDVCVVMLYAYEYGPSAPARNAKSVYAAYVDSVEYVYPDAVRSHIYQEVIGVYLEHTRRVRCETAYLWSAPAWQAVSYV 396
            LS+R++++   TC+V  +++  F  + GLG      ++P  + Y  KA+ +F R+DGV+VC+  +Y  EYG  AP  NA+  Y +Y+DSVEY  P   R+ +Y E++  YL+  RR   + A++WS P  +  +++
Sbjct: 1399 LSIRLISNVEATCEVHSVLRETFCCKDGLGVGPNKNEVPELLKYRSKALSMFQRVDGVEVCLFSMYVQEYGADAPYFNARRAYISYLDSVEYFRPRKHRTAVYHEILVAYLDWLRRRGFKAAHIWSCPPQRGNNFI 1534          
BLAST of jgi.p|Trimin1|159407 vs. uniprot
Match: T1EHT7_HELRO (Histone acetyltransferase n=1 Tax=Helobdella robusta TaxID=6412 RepID=T1EHT7_HELRO)

HSP 1 Score: 94.0 bits (232), Expect = 7.720e-20
Identity = 43/131 (32.82%), Postives = 80/131 (61.07%), Query Frame = 1
Query:    4 GDLSVRVLASGTRTCDVPIIIQHMFRAGLGADLPCTISYTIKAIGLFARIDGVDVCVVMLYAYEYGPSAPARNAKSVYAAYVDSVEYVYPDAVRSHIYQEVIGVYLEHTRRVRCETAYLWSAPAWQAVSYV 396
            G++++RVL+S  +T +V    + + R   G ++P +  YT K+I  F  IDG  +C   ++  EYG ++PA NA+ +Y AY+DSV +  P  +R+ +Y E++  YL++ +++   TA++W+ P  +   Y+
Sbjct:  269 GEVTIRVLSSSEKTVEV----KPLMRGRHGDEMPDSFPYTAKSIFAFEEIDGCSICFFGMHVQEYGSNSPAPNARRIYIAYLDSVNFFQPKHMRTPVYHEILIGYLDYVKKLGYATAHIWACPPSEGDDYI 395          
BLAST of jgi.p|Trimin1|159407 vs. uniprot
Match: A0A7S3P7Q9_9STRA (Histone acetyltransferase n=1 Tax=Amphora coffeiformis TaxID=265554 RepID=A0A7S3P7Q9_9STRA)

HSP 1 Score: 90.1 bits (222), Expect = 2.310e-18
Identity = 49/139 (35.25%), Postives = 80/139 (57.55%), Query Frame = 1
Query:   10 LSVRVLASGTRTCDVPIIIQHMFRAGLGAD------LPCTISYTIKAIGLFARIDGVDVCVVMLYAYEYGPSA----PARNAKSVYAAYVDSVEYVYPDAVRSHIYQEVIGVYLEHTRRVRCETAYLWSAPAWQAVSYV 396
            ++VRV++   +   VP ++++ FR   G +      LP  + Y  KAI LF +IDG DVC+ ++Y +EY  +A    P   +K VY AY+DSVE+  P  +R+ +Y E++  YL   R    E+A++W+ P  +  S+V
Sbjct:  488 VTVRVVSDCEKHFRVPDVVRNHFRVATGEEGSDKGSLPPHVQYRSKAIALFQKIDGFDVCIFIMYVHEYEENATEGQPRSGSKRVYIAYLDSVEHFRPRRLRTSVYHEILVAYLATARLRGYESAHIWACPPSRGNSFV 626          
BLAST of jgi.p|Trimin1|159407 vs. uniprot
Match: A0A1Z5KD26_FISSO (Histone acetyltransferase n=2 Tax=Fistulifera solaris TaxID=1519565 RepID=A0A1Z5KD26_FISSO)

HSP 1 Score: 86.3 bits (212), Expect = 5.120e-17
Identity = 49/140 (35.00%), Postives = 78/140 (55.71%), Query Frame = 1
Query:    1 EGDLSVRVLASGTRTCDVPIIIQHMFRAGLGADLPCT-ISYTIKAIGLFARIDGVDVCVVMLYAYEYG-------PSAPARNAKSVYAAYVDSVEYVYPDAVRSHIYQEVIGVYLEHTRRVRCETAYLWSAPAWQAVSYV 396
            E  ++VRV++   R  +VP +I+  F       +P   + Y  KA+ LF +IDG+DVC+  +Y  EY         S+P    K VY AY+DSVE+  P + R+ +YQE++  YL   R+   +TA++W+ P  +  S+V
Sbjct:  487 EKTVTVRVISDCARAFNVPDVIRKHFCMPTTQGMPPQRVHYRSKALVLFQKIDGLDVCIFCMYVQEYDGRDEYEEASSPVDTKKRVYIAYIDSVEHFQPRSCRTKVYQELLVSYLASARKRGYDTAHIWACPPSRGNSFV 626          
BLAST of jgi.p|Trimin1|159407 vs. uniprot
Match: A0A250XAH2_9CHLO (Histone acetyltransferase n=1 Tax=Chlamydomonas eustigma TaxID=1157962 RepID=A0A250XAH2_9CHLO)

HSP 1 Score: 86.3 bits (212), Expect = 5.260e-17
Identity = 45/141 (31.91%), Postives = 75/141 (53.19%), Query Frame = 1
Query:   10 LSVRVLASGTRTCDVPIIIQHMFRAGLGADLPCTISYTIKAIGLFARIDGVDVCVVMLYAYEYGPSAPARNAKSVYAAYVDSVEYVYPDAVRSH------------IYQEVIGVYLEHTRRVRCETAYLWSAPAWQAVSYV 396
            +SVRV+ +  + C+V    +  F+   G+D P   +Y  + I LF  ++GVDVC+ ++Y  EYG   PA N   VY +Y+DSV+Y  PD + +H            +Y +++  YL + +R+  E  Y+W+ P      Y+
Sbjct: 1197 MSVRVVNNIIKKCEV----KSRFQEAFGSDYPQEFAYRQRVIVLFQTMEGVDVCLFVMYVQEYGQDCPAPNKNVVYLSYLDSVKYFRPDNIVAHGCPNPKTSLRTFVYHQLLVGYLSYVKRLGYEQMYIWACPPMAGDDYI 1333          
The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|159407 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A835YI61_9STRA5.880e-93100.00Histone acetyltransferase n=1 Tax=Tribonema minus ... [more]
A0A835YHF1_9STRA1.040e-5975.76Histone acetyltransferase (Fragment) n=1 Tax=Tribo... [more]
A0A836C832_9STRA2.770e-4366.10Histone acetyltransferase n=1 Tax=Tribonema minus ... [more]
A0A836C8R2_9STRA9.580e-3676.92Histone acetyltransferase n=1 Tax=Tribonema minus ... [more]
A0A835ZGH1_9STRA1.830e-2640.74Histone acetyltransferase (Fragment) n=1 Tax=Tribo... [more]
A0A6H5L4V8_9PHAE6.630e-2135.29Histone acetyltransferase n=1 Tax=Ectocarpus sp. C... [more]
T1EHT7_HELRO7.720e-2032.82Histone acetyltransferase n=1 Tax=Helobdella robus... [more]
A0A7S3P7Q9_9STRA2.310e-1835.25Histone acetyltransferase n=1 Tax=Amphora coffeifo... [more]
A0A1Z5KD26_FISSO5.120e-1735.00Histone acetyltransferase n=2 Tax=Fistulifera sola... [more]
A0A250XAH2_9CHLO5.260e-1731.91Histone acetyltransferase n=1 Tax=Chlamydomonas eu... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Contig_9contigContig_9:554550..554951 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Tribonema minus UTEX_B_31562021-06-17
Properties
Property NameValue
ProteomeIdTrimin1|159407|e_gw1.9.119.1
BRITEko00000,ko00001,ko01000,ko03000,ko03029,ko03036
KEGG Pathwayko04024,ko04066,ko04068,ko04110,ko04310,ko04330,ko04350,ko04520,ko04630,ko04720,ko04916,ko04919,ko04922,ko05016,ko05152,ko05161,ko05164,ko05165,ko05166,ko05167,ko05168,ko05169,ko05200,ko05203,ko05206,ko05211,ko05215,map04024,map04066,map04068,map04110,map04310,map04330,map04350,map04520,map04630,map04720,map04916,map04919,map04922,map05016,map05152,map05161,map05164,map05165,map05166,map05167,map05168,map05169,map05200,map05203,map05206,map05211,map05215
KEGG koko:K04498
EC2.3.1.48
Descriptionprotein propionyltransferase activity
COG categoryK
Max annot lvl33208|Metazoa
EggNOG OGsCOG5076@1|root,KOG1778@2759|Eukaryota,38G23@33154|Opisthokonta,3BAGN@33208|Metazoa,3CRQD@33213|Bilateria
Evalue1.27e-20
Seed ortholog6412.HelroP130363
Hectar predicted targeting categoryother localisation
TranscriptId159729
TrackFilteredModels1
ProteinId159407
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|159407gene_3550Tribonema minus UTEX_B_3156 geneContig_9 554550..554951 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
exon_3550_1exon_3550_1Tribonema minus UTEX_B_3156 exonContig_9 554550..554951 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
CDS_3550CDS_3550Tribonema minus UTEX_B_3156 CDSContig_9 554550..554951 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|159407Trimin1|159407|e_gw1.9.119.1Tribonema minus UTEX_B_3156 polypeptideContig_9 554550..554951 -


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>mRNA_3550 ID=mRNA_3550|Name=jgi.p|Trimin1|159407|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=402bp|location=Sequence derived from alignment at Contig_9:554550..554951- (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon.  
GAGGGGGACCTGAGCGTGCGCGTGCTGGCAAGCGGCACTAGGACTTGTGA
CGTGCCGATTATCATTCAGCACATGTTCAGGGCGGGGCTTGGTGCGGATC
TGCCCTGTACCATCAGCTACACCATAAAGGCCATTGGGCTGTTTGCGCGC
ATCGACGGCGTAGATGTGTGCGTTGTGATGTTGTACGCATACGAGTACGG
CCCCAGCGCTCCTGCTCGCAACGCTAAGTCCGTGTATGCAGCGTACGTCG
ACAGCGTCGAGTACGTATACCCGGACGCGGTTCGCAGCCATATATACCAG
GAGGTAATTGGCGTCTACCTCGAACACACCCGCAGGGTGAGATGTGAGAC
CGCATATTTGTGGAGTGCCCCGGCTTGGCAGGCTGTCAGCTACGTCTGGT
AG
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protein sequence of jgi.p|Trimin1|159407

>Trimin1|159407|e_gw1.9.119.1 ID=Trimin1|159407|e_gw1.9.119.1|Name=jgi.p|Trimin1|159407|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=134bp
EGDLSVRVLASGTRTCDVPIIIQHMFRAGLGADLPCTISYTIKAIGLFAR
IDGVDVCVVMLYAYEYGPSAPARNAKSVYAAYVDSVEYVYPDAVRSHIYQ
EVIGVYLEHTRRVRCETAYLWSAPAWQAVSYVW*
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mRNA from alignment at Contig_9:554550..554951-

Legend: exonpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_3550 ID=mRNA_3550|Name=jgi.p|Trimin1|159407|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=402bp|location=Sequence derived from alignment at Contig_9:554550..554951- (Tribonema minus UTEX_B_3156 )
GAGGGGGACCTGAGCGTGCGCGTGCTGGCAAGCGGCACTAGGACTTGTGA CGTGCCGATTATCATTCAGCACATGTTCAGGGCGGGGCTTGGTGCGGATC TGCCCTGTACCATCAGCTACACCATAAAGGCCATTGGGCTGTTTGCGCGC ATCGACGGCGTAGATGTGTGCGTTGTGATGTTGTACGCATACGAGTACGG CCCCAGCGCTCCTGCTCGCAACGCTAAGTCCGTGTATGCAGCGTACGTCG ACAGCGTCGAGTACGTATACCCGGACGCGGTTCGCAGCCATATATACCAG GAGGTAATTGGCGTCTACCTCGAACACACCCGCAGGGTGAGATGTGAGAC CGCATATTTGTGGAGTGCCCCGGCTTGGCAGGCTGTCAGCTACGTCTGGT AG
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Coding sequence (CDS) from alignment at Contig_9:554550..554951-

>mRNA_3550 ID=mRNA_3550|Name=jgi.p|Trimin1|159407|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=402bp|location=Sequence derived from alignment at Contig_9:554550..554951- (Tribonema minus UTEX_B_3156 )
GAGGGGGACCTGAGCGTGCGCGTGCTGGCAAGCGGCACTAGGACTTGTGA
CGTGCCGATTATCATTCAGCACATGTTCAGGGCGGGGCTTGGTGCGGATC
TGCCCTGTACCATCAGCTACACCATAAAGGCCATTGGGCTGTTTGCGCGC
ATCGACGGCGTAGATGTGTGCGTTGTGATGTTGTACGCATACGAGTACGG
CCCCAGCGCTCCTGCTCGCAACGCTAAGTCCGTGTATGCAGCGTACGTCG
ACAGCGTCGAGTACGTATACCCGGACGCGGTTCGCAGCCATATATACCAG
GAGGTAATTGGCGTCTACCTCGAACACACCCGCAGGGTGAGATGTGAGAC
CGCATATTTGTGGAGTGCCCCGGCTTGGCAGGCTGTCAGCTACGTCTGGT
AG
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