mRNA_3550 (mRNA) Tribonema minus UTEX_B_3156
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Overview
Homology
BLAST of jgi.p|Trimin1|159407 vs. uniprot
Match: A0A835YI61_9STRA (Histone acetyltransferase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YI61_9STRA) HSP 1 Score: 273 bits (698), Expect = 5.880e-93 Identity = 133/133 (100.00%), Postives = 133/133 (100.00%), Query Frame = 1
Query: 1 EGDLSVRVLASGTRTCDVPIIIQHMFRAGLGADLPCTISYTIKAIGLFARIDGVDVCVVMLYAYEYGPSAPARNAKSVYAAYVDSVEYVYPDAVRSHIYQEVIGVYLEHTRRVRCETAYLWSAPAWQAVSYVW 399
EGDLSVRVLASGTRTCDVPIIIQHMFRAGLGADLPCTISYTIKAIGLFARIDGVDVCVVMLYAYEYGPSAPARNAKSVYAAYVDSVEYVYPDAVRSHIYQEVIGVYLEHTRRVRCETAYLWSAPAWQAVSYVW
Sbjct: 1 EGDLSVRVLASGTRTCDVPIIIQHMFRAGLGADLPCTISYTIKAIGLFARIDGVDVCVVMLYAYEYGPSAPARNAKSVYAAYVDSVEYVYPDAVRSHIYQEVIGVYLEHTRRVRCETAYLWSAPAWQAVSYVW 133
BLAST of jgi.p|Trimin1|159407 vs. uniprot
Match: A0A835YHF1_9STRA (Histone acetyltransferase (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YHF1_9STRA) HSP 1 Score: 199 bits (506), Expect = 1.040e-59 Identity = 100/132 (75.76%), Postives = 107/132 (81.06%), Query Frame = 1
Query: 4 GDLSVRVLASGTRTCDVPIIIQHMFRAGLGADLPCTISYTIKAIGLFARIDGVDVCVVMLYAYEYGPSAPARNAKSVYAAYVDSVEYVYPDAVRSHIYQEVIGVYLEHTRRVRCETAYLWSAPAWQAVSYVW 399
GDLSVRVLASG + DVPIII HMFRAG G DLP YT+KAIGL ARIDGVDVCV+++Y YEYG APA N KSVY AYVDSVEYVYPDAVRS +YQEVIG YLEH RR+ ETAYLWSAPA Q SYVW
Sbjct: 275 GDLSVRVLASGNKIYDVPIIIWHMFRAGPGDDLPPAFDYTVKAIGLCARIDGVDVCVLIVYVYEYGADAPACNRKSVYVAYVDSVEYVYPDAVRSQLYQEVIGAYLEHARRLGFETAYLWSAPARQVGSYVW 406
BLAST of jgi.p|Trimin1|159407 vs. uniprot
Match: A0A836C832_9STRA (Histone acetyltransferase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836C832_9STRA) HSP 1 Score: 161 bits (407), Expect = 2.770e-43 Identity = 78/118 (66.10%), Postives = 93/118 (78.81%), Query Frame = 1
Query: 49 DVPIIIQHMFRAGLGADLPCTISYTIKAIGLFARIDGVDVCVVMLYAYEYGPSAPARNAKSVYAAYVDSVEYVYPDAVRSHIYQEVIGVYLEHTRRVRCETAYLWSAPAWQA-VSYVW 399
DVP II+ FRAG GA+LP I Y IKAIGLFA IDGVDVCV+M+Y YEYGP APA NA+SVY AYVDS+EY+YP AVRS +YQE+I YLEH R + +TAYLWS+P A ++Y+W
Sbjct: 788 DVPAIIRRAFRAGPGAELPPAIDYIIKAIGLFALIDGVDVCVLMVYVYEYGPDAPACNARSVYIAYVDSIEYLYPGAVRSQLYQELIAAYLEHARLLGYDTAYLWSSPPQMASINYIW 905
BLAST of jgi.p|Trimin1|159407 vs. uniprot
Match: A0A836C8R2_9STRA (Histone acetyltransferase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836C8R2_9STRA) HSP 1 Score: 139 bits (351), Expect = 9.580e-36 Identity = 70/91 (76.92%), Postives = 77/91 (84.62%), Query Frame = 1
Query: 7 DLSVRVLASGTRTCDVPIIIQHMFRAGLGADLPCTISYTIKAIGLFARIDGVDVCVVMLYAYEYGPSAPARNAKSVYAAYVDSVEYVYPDA 279
DLSVRVLASGT T +VP+IIQ FRAG GADLP I Y IKAIGLFA IDGVDVCV+M+Y YEYGP+AP+ NAKSVY AYVDSVEY+YP A
Sbjct: 652 DLSVRVLASGTATHNVPLIIQRAFRAGPGADLPPAIDYIIKAIGLFALIDGVDVCVLMVYVYEYGPNAPSCNAKSVYVAYVDSVEYLYPGA 742
BLAST of jgi.p|Trimin1|159407 vs. uniprot
Match: A0A835ZGH1_9STRA (Histone acetyltransferase (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZGH1_9STRA) HSP 1 Score: 113 bits (282), Expect = 1.830e-26 Identity = 55/135 (40.74%), Postives = 85/135 (62.96%), Query Frame = 1
Query: 4 GDLSVRVLASGTRTCDVPIIIQHMFRAGLGAD----LPCTISYTIKAIGLFARIDGVDVCVVMLYAYEYGPSAPARNAKSVYAAYVDSVEYVYPDAVRSHIYQEVIGVYLEHTRRVRCETAYLWSAPAWQAVSYV 396
G +S+RV++S T T DV +++ F+ G GA +P +SY KA+ +F IDG +VC+ +Y E+G AP+ NA+ VY AY+DSVEY P A R+H+Y E++ YL+ RR TA++WS P + +++
Sbjct: 432 GSISIRVVSSITATHDVSSVVRRTFKPGGGAPPGACIPRELSYASKALCMFQCIDGAEVCLFSMYVQEHGADAPSFNARRVYVAYLDSVEYFRPRAARTHVYHEILAAYLDWARRRGFRTAHIWSCPPQRGNNFI 566
BLAST of jgi.p|Trimin1|159407 vs. uniprot
Match: A0A6H5L4V8_9PHAE (Histone acetyltransferase n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L4V8_9PHAE) HSP 1 Score: 97.4 bits (241), Expect = 6.630e-21 Identity = 48/136 (35.29%), Postives = 82/136 (60.29%), Query Frame = 1
Query: 10 LSVRVLASGTRTCDVPIIIQHMF--RAGLGA-----DLPCTISYTIKAIGLFARIDGVDVCVVMLYAYEYGPSAPARNAKSVYAAYVDSVEYVYPDAVRSHIYQEVIGVYLEHTRRVRCETAYLWSAPAWQAVSYV 396
LS+R++++ TC+V +++ F + GLG ++P + Y KA+ +F R+DGV+VC+ +Y EYG AP NA+ Y +Y+DSVEY P R+ +Y E++ YL+ RR + A++WS P + +++
Sbjct: 1399 LSIRLISNVEATCEVHSVLRETFCCKDGLGVGPNKNEVPELLKYRSKALSMFQRVDGVEVCLFSMYVQEYGADAPYFNARRAYISYLDSVEYFRPRKHRTAVYHEILVAYLDWLRRRGFKAAHIWSCPPQRGNNFI 1534
BLAST of jgi.p|Trimin1|159407 vs. uniprot
Match: T1EHT7_HELRO (Histone acetyltransferase n=1 Tax=Helobdella robusta TaxID=6412 RepID=T1EHT7_HELRO) HSP 1 Score: 94.0 bits (232), Expect = 7.720e-20 Identity = 43/131 (32.82%), Postives = 80/131 (61.07%), Query Frame = 1
Query: 4 GDLSVRVLASGTRTCDVPIIIQHMFRAGLGADLPCTISYTIKAIGLFARIDGVDVCVVMLYAYEYGPSAPARNAKSVYAAYVDSVEYVYPDAVRSHIYQEVIGVYLEHTRRVRCETAYLWSAPAWQAVSYV 396
G++++RVL+S +T +V + + R G ++P + YT K+I F IDG +C ++ EYG ++PA NA+ +Y AY+DSV + P +R+ +Y E++ YL++ +++ TA++W+ P + Y+
Sbjct: 269 GEVTIRVLSSSEKTVEV----KPLMRGRHGDEMPDSFPYTAKSIFAFEEIDGCSICFFGMHVQEYGSNSPAPNARRIYIAYLDSVNFFQPKHMRTPVYHEILIGYLDYVKKLGYATAHIWACPPSEGDDYI 395
BLAST of jgi.p|Trimin1|159407 vs. uniprot
Match: A0A7S3P7Q9_9STRA (Histone acetyltransferase n=1 Tax=Amphora coffeiformis TaxID=265554 RepID=A0A7S3P7Q9_9STRA) HSP 1 Score: 90.1 bits (222), Expect = 2.310e-18 Identity = 49/139 (35.25%), Postives = 80/139 (57.55%), Query Frame = 1
Query: 10 LSVRVLASGTRTCDVPIIIQHMFRAGLGAD------LPCTISYTIKAIGLFARIDGVDVCVVMLYAYEYGPSA----PARNAKSVYAAYVDSVEYVYPDAVRSHIYQEVIGVYLEHTRRVRCETAYLWSAPAWQAVSYV 396
++VRV++ + VP ++++ FR G + LP + Y KAI LF +IDG DVC+ ++Y +EY +A P +K VY AY+DSVE+ P +R+ +Y E++ YL R E+A++W+ P + S+V
Sbjct: 488 VTVRVVSDCEKHFRVPDVVRNHFRVATGEEGSDKGSLPPHVQYRSKAIALFQKIDGFDVCIFIMYVHEYEENATEGQPRSGSKRVYIAYLDSVEHFRPRRLRTSVYHEILVAYLATARLRGYESAHIWACPPSRGNSFV 626
BLAST of jgi.p|Trimin1|159407 vs. uniprot
Match: A0A1Z5KD26_FISSO (Histone acetyltransferase n=2 Tax=Fistulifera solaris TaxID=1519565 RepID=A0A1Z5KD26_FISSO) HSP 1 Score: 86.3 bits (212), Expect = 5.120e-17 Identity = 49/140 (35.00%), Postives = 78/140 (55.71%), Query Frame = 1
Query: 1 EGDLSVRVLASGTRTCDVPIIIQHMFRAGLGADLPCT-ISYTIKAIGLFARIDGVDVCVVMLYAYEYG-------PSAPARNAKSVYAAYVDSVEYVYPDAVRSHIYQEVIGVYLEHTRRVRCETAYLWSAPAWQAVSYV 396
E ++VRV++ R +VP +I+ F +P + Y KA+ LF +IDG+DVC+ +Y EY S+P K VY AY+DSVE+ P + R+ +YQE++ YL R+ +TA++W+ P + S+V
Sbjct: 487 EKTVTVRVISDCARAFNVPDVIRKHFCMPTTQGMPPQRVHYRSKALVLFQKIDGLDVCIFCMYVQEYDGRDEYEEASSPVDTKKRVYIAYIDSVEHFQPRSCRTKVYQELLVSYLASARKRGYDTAHIWACPPSRGNSFV 626
BLAST of jgi.p|Trimin1|159407 vs. uniprot
Match: A0A250XAH2_9CHLO (Histone acetyltransferase n=1 Tax=Chlamydomonas eustigma TaxID=1157962 RepID=A0A250XAH2_9CHLO) HSP 1 Score: 86.3 bits (212), Expect = 5.260e-17 Identity = 45/141 (31.91%), Postives = 75/141 (53.19%), Query Frame = 1
Query: 10 LSVRVLASGTRTCDVPIIIQHMFRAGLGADLPCTISYTIKAIGLFARIDGVDVCVVMLYAYEYGPSAPARNAKSVYAAYVDSVEYVYPDAVRSH------------IYQEVIGVYLEHTRRVRCETAYLWSAPAWQAVSYV 396
+SVRV+ + + C+V + F+ G+D P +Y + I LF ++GVDVC+ ++Y EYG PA N VY +Y+DSV+Y PD + +H +Y +++ YL + +R+ E Y+W+ P Y+
Sbjct: 1197 MSVRVVNNIIKKCEV----KSRFQEAFGSDYPQEFAYRQRVIVLFQTMEGVDVCLFVMYVQEYGQDCPAPNKNVVYLSYLDSVKYFRPDNIVAHGCPNPKTSLRTFVYHQLLVGYLSYVKRLGYEQMYIWACPPMAGDDYI 1333 The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|159407 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
This mRNA is a part of the following gene feature(s):
The following exon feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
spliced messenger RNA >mRNA_3550 ID=mRNA_3550|Name=jgi.p|Trimin1|159407|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=402bp|location=Sequence derived from alignment at Contig_9:554550..554951- (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon. GAGGGGGACCTGAGCGTGCGCGTGCTGGCAAGCGGCACTAGGACTTGTGAback to top protein sequence of jgi.p|Trimin1|159407 >Trimin1|159407|e_gw1.9.119.1 ID=Trimin1|159407|e_gw1.9.119.1|Name=jgi.p|Trimin1|159407|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=134bp EGDLSVRVLASGTRTCDVPIIIQHMFRAGLGADLPCTISYTIKAIGLFARback to top mRNA from alignment at Contig_9:554550..554951- Legend: exonpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_3550 ID=mRNA_3550|Name=jgi.p|Trimin1|159407|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=402bp|location=Sequence derived from alignment at Contig_9:554550..554951- (Tribonema minus UTEX_B_3156 )back to top Coding sequence (CDS) from alignment at Contig_9:554550..554951- >mRNA_3550 ID=mRNA_3550|Name=jgi.p|Trimin1|159407|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=402bp|location=Sequence derived from alignment at Contig_9:554550..554951- (Tribonema minus UTEX_B_3156 )back to top |