mRNA_3542 (mRNA) Tribonema minus UTEX_B_3156
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Overview
Homology
BLAST of jgi.p|Trimin1|159391 vs. uniprot
Match: A0A835YKN4_9STRA (CLU domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YKN4_9STRA) HSP 1 Score: 508 bits (1309), Expect = 4.050e-182 Identity = 254/254 (100.00%), Postives = 254/254 (100.00%), Query Frame = 1
Query: 1 MLCPPPXXPSYPLPPYQTGLPRVKVEDLGDNWNALFQEAQALPEATEMERTYKHLLLATVYRDFTAAAVMYGRTIISEFFLHSYLRSIRPREVGGFAGGKKFLFRGILFKLADGAVGPWAGSDEAAAKAAGHELRGHSYYAHAGVAGLHFSPMCILDYKGFRMVCAAQLPLGAATLISGSSDGGINVVGVGDAEVARVLEEAAARLRLRPHPCRGTTVYSGADVEVHKGLDGNLYMLDLARSMPPEDPKVRTST 762
MLCPPPXXPSYPLPPYQTGLPRVKVEDLGDNWNALFQEAQALPEATEMERTYKHLLLATVYRDFTAAAVMYGRTIISEFFLHSYLRSIRPREVGGFAGGKKFLFRGILFKLADGAVGPWAGSDEAAAKAAGHELRGHSYYAHAGVAGLHFSPMCILDYKGFRMVCAAQLPLGAATLISGSSDGGINVVGVGDAEVARVLEEAAARLRLRPHPCRGTTVYSGADVEVHKGLDGNLYMLDLARSMPPEDPKVRTST
Sbjct: 1 MLCPPPXXPSYPLPPYQTGLPRVKVEDLGDNWNALFQEAQALPEATEMERTYKHLLLATVYRDFTAAAVMYGRTIISEFFLHSYLRSIRPREVGGFAGGKKFLFRGILFKLADGAVGPWAGSDEAAAKAAGHELRGHSYYAHAGVAGLHFSPMCILDYKGFRMVCAAQLPLGAATLISGSSDGGINVVGVGDAEVARVLEEAAARLRLRPHPCRGTTVYSGADVEVHKGLDGNLYMLDLARSMPPEDPKVRTST 254
BLAST of jgi.p|Trimin1|159391 vs. uniprot
Match: D8LF64_ECTSI (Clu domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LF64_ECTSI) HSP 1 Score: 208 bits (529), Expect = 7.970e-64 Identity = 116/221 (52.49%), Postives = 147/221 (66.52%), Query Frame = 1
Query: 91 NWNALFQEAQALPEATEMERTYKHLLLATVYRDFTAAAVMYGRTIISEFFLHSYLRSIRPRE-VGGFAGGKKFLFRGILFKLADGAVGPWAGSDEAAAKAAGHELRGHSYYAHAGVAGLHFSPMCILDYKGFRMVCAAQLPLGAATLISGSSDGGINVVGVGDAE-VARVLEEAAARLRLRPHPCRGTTVYSGADVEVHKGLDGNLYMLDLARSMPPEDPK 747
NWN LFQ A LPE T + K + TV RDF AAAV YG+TIISE+FL +SI+P E +GG AGG KF++RGILFKLADG+ GP+ G+DEAAAK AGH+LRG ++Y A + GL ++ C++DYKGFRM A LP+ + TL GSSD G V D+E +A+ L+ A +L LR H +YS D+E H G G+ Y+LD ARS PPE PK
Sbjct: 10 NWNELFQSALDLPEDTPDQCYRKWERMTTVNRDFKAAAVTYGKTIISEYFLDLKHKSIKPNENLGGSAGGMKFVWRGILFKLADGSRGPYLGNDEAAAKGAGHDLRGATHYLDARIRGLRYALQCLIDYKGFRMTAQAVLPVSSETLRYGSSDAGRTVHN--DSENLAKKLKAVAKKLNLRTHWVNDKEMYSACDIEGHVGEGGSHYLLDFARSFPPESPK 228
BLAST of jgi.p|Trimin1|159391 vs. uniprot
Match: D7G9G7_ECTSI (Clu domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G9G7_ECTSI) HSP 1 Score: 210 bits (535), Expect = 5.320e-62 Identity = 104/170 (61.18%), Postives = 128/170 (75.29%), Query Frame = 1
Query: 55 GLPRVKVEDLGDNWNALFQEAQALPEATEMERTYKHLLLATVYRDFTAAAVMYGRTIISEFFLHSYLRSIRPREVGGFAGGKKFLFRGILFKLADGAVGPWAGSDEAAAKAAGHELRGHSYYAHAGVAGLHFSPMCILDYKGFRMVCAAQLPLGAATLISGSSDGGINVV 564
G+ RV++ D GDNWN +QEA +LP T+M+ YK L VY DF AV YGRTIISE+FLH Y++S++P+ +GG AGGKK+L+RGILFKLADG+ GP+ GSDEAAAKAAGHELRG S Y H GV GL PMC+LDYKGFRM+ A LPLG +L G++DGG V+
Sbjct: 87 GMARVQMSDRGDNWNDRWQEALSLPNKTKMDINYKRRSLDAVYSDFVHTAVTYGRTIISEYFLHEYMKSVKPKRLGGLAGGKKYLWRGILFKLADGSQGPYGGSDEAAAKAAGHELRGASEYLHTGV-GLCIPPMCLLDYKGFRMLAQAHLPLGETSLKMGTNDGGRTVL 255
BLAST of jgi.p|Trimin1|159391 vs. uniprot
Match: D7G5G9_ECTSI (Clu domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G5G9_ECTSI) HSP 1 Score: 209 bits (531), Expect = 7.060e-59 Identity = 112/219 (51.14%), Postives = 144/219 (65.75%), Query Frame = 1
Query: 91 NWNALFQEAQALPEATEMERTYKHLLLATVYRDFTAAAVMYGRTIISEFFLHSYLRSIRPREVGGFAGGKKFLFRGILFKLADGAVGPWAGSDEAAAKAAGHELRGHSYYAHAGVAGLHFSPMCILDYKGFRMVCAAQLPLGAATLISGSSDGGINVVGVGDAEVARVLEEAAARLRLRPHPCRGTTVYSGADVEVHKGLDGNLYMLDLARSMPPEDPK 747
NWN LFQ A LPE T + K L TV RDF A AV YG+TIISE+FL + +SIR +E+GG AGG KF++RGILFKLADG+ GP+ G+DEAAAK AGH+LRG ++Y + GL ++ C++DYKGFRM A LP+ +L GSS+GG V D +A+ L+ AA +L LR H +YS D+E H G + Y+LD AR+ PPE PK
Sbjct: 247 NWNELFQSALDLPEETPDQCYRKWERLTTVNRDFKATAVTYGKTIISEYFLETEHKSIRLKELGGVAGGMKFVWRGILFKLADGSKGPYLGNDEAAAKGAGHDLRGATHYLATRIRGLRYALQCLIDYKGFRMTAQAVLPVNKESLRYGSSNGGKTVHNE-DESLAKKLKAAAKKLNLRTHRVNDKDMYSACDIEGHVGEGDSHYLLDFARTFPPESPK 464
BLAST of jgi.p|Trimin1|159391 vs. uniprot
Match: A0A835ZAL9_9STRA (CLU domain-containing protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZAL9_9STRA) HSP 1 Score: 181 bits (458), Expect = 2.460e-53 Identity = 106/208 (50.96%), Postives = 130/208 (62.50%), Query Frame = 1
Query: 133 ATEMERTY--KHLLLATVYRDFTAAAVMYGRTIISEFFLHSYLRSIRPREVGGFAGGKKFLFRGILFKLADGAVGPWAGSDEAAAKAAGHELRGHSYYAHAGVAGLHFSPMCILDYKGFRMVCAAQLPL-GAATLISGSSDGGINVVGVGDAEVARVLEEAAARLRLRPHPCRG-TTVYSGADVEVHKGLDGNLYMLDLARSMPPEDP 744
AT RT K+ L + +DF +AAV YGRTIISE+FL +S+ P VGG AGG+KFL RGILFKLADG+ GP+ GSDEAA KA ++L+G + + GL S ++DYKGFRM AQLPL ATL GS D G VV GD + L AA+L L+ H RG + G DVE H+G DGNLY++D AR PPE P
Sbjct: 9 ATACRRTLCRKYQALTALNKDFISAAVTYGRTIISEYFLKEEAKSVCPSLVGGIAGGRKFLLRGILFKLADGSRGPYDGSDEAAGKALNNDLKGAVHLVKCSIPGLFCSLQALIDYKGFRMHAQAQLPLCSRATLRCGSCDAGATVVD-GDGALRHKLRLVAAQLNLKAHRGRGGAELQLGCDVEGHRGTDGNLYVIDAARVFPPESP 215
BLAST of jgi.p|Trimin1|159391 vs. uniprot
Match: L8H8E7_ACACA (Tetratricopeptide repeat domain containing protein n=1 Tax=Acanthamoeba castellanii str. Neff TaxID=1257118 RepID=L8H8E7_ACACA) HSP 1 Score: 149 bits (375), Expect = 4.090e-37 Identity = 86/223 (38.57%), Postives = 122/223 (54.71%), Query Frame = 1
Query: 91 NWNALFQEAQALPEATEMERTYKHLLLATVYRDFTAAAVMYGRTIISEFFLHSYLRSIRPREVGGFAGGKKFLFRGILFKLADGAVGPWAGSDEAAAKAAGHELRGHSYYAHAGVAGLHFSPMCILDYKGFRMVCAAQLPLGAATLISGSSDGGINVVGVGDAEVARVLEEAAARLRLRPHPCR-----GTTVYSGADVEVHKGLDGNLYMLDLARSMPPEDP 744
NWN FQ +L + K +A + DF AA YG+ IISE LH ++I+P VGG AGG+K++ +GI FK A G + G DE A KAA H+L+G +Y + GLH M ++DY GFR++ LP+ A TL GS D G+ + D + ++++AA ++ LR H G +Y D+E HKG D Y++D AR+ PPE P
Sbjct: 138 NWNEQFQRLLSLEPSAN-----KFAEMARLAHDFVFAAETYGKIIISELGLHESKKTIKPIAVGGQAGGEKYIVQGIFFKFATDIFGIYGG-DEYAMKAASHDLKGLIHYYSCQIPGLHVPLMALIDYLGFRLIAITILPINAGTLRYGSCDAGVTIH-CEDPTLKAMMKQAARKMHLRGHYVGTPEGLGKKIYGPVDIEAHKGTDDRYYVVDFARTFPPERP 353
BLAST of jgi.p|Trimin1|159391 vs. uniprot
Match: A0A2P6NJP1_9EUKA (Uncharacterized protein n=1 Tax=Planoprotostelium fungivorum TaxID=1890364 RepID=A0A2P6NJP1_9EUKA) HSP 1 Score: 147 bits (371), Expect = 1.480e-36 Identity = 89/226 (39.38%), Postives = 131/226 (57.96%), Query Frame = 1
Query: 91 NWNALFQEA----QALPEATEMERTYKHLLLATVYRDFTAAAVMYGRTIISEFFLHSYLRSIRPREVGGFAGGKKFLFRGILFKLADGAVGPWAGSDEAAAKAAGHELRGHSYYAHAGVAGLHFSPMCILDYKGFRMVCAAQLPLGAATLISGSSDGGINVVGVGDAEVARVLEEAAARLRLRPH-----PCRGTTVYSGADVEVHKGLDGNLYMLDLARSMPPED 741
+WN FQ+ +A E Y L + + +DF A YG+ IISE +L ++I+P ++GGFAGG K++ +GILFKLA + G + GSD AAAK AG++L+G Y + G++ LHF M ++DY GFR+ + LP+ + T+I G+++GG V + + + A +L L PH P T+YS AD+E H G DG Y++D ARS PP D
Sbjct: 701 SWNQQFQQILENLNLCDDAQERSTIYSQL--SNLAQDFVHYAKTYGKLIISELYLPDDQKTIKPNDIGGFAGGVKYVVKGILFKLAVDSHGLY-GSDMAAAKVAGNDLKGLVQYFNLGISRLHFPLMALVDYMGFRIQALSLLPINSDTIIYGTANGGRTVFDK-NLKFNAKMRLAGKKLGLSPHTVGLYPKTSKTLYSCADMEGHDGKDGRFYLIDFARSFPPID 922
BLAST of jgi.p|Trimin1|159391 vs. uniprot
Match: UPI0006450E29 (hypothetical protein n=1 Tax=Acytostelium subglobosum LB1 TaxID=1410327 RepID=UPI0006450E29) HSP 1 Score: 146 bits (369), Expect = 2.510e-36 Identity = 91/262 (34.73%), Postives = 139/262 (53.05%), Query Frame = 1
Query: 25 PSYPLPPYQTGLPRVKVED---------LGDNWNALFQEAQALPEATEMERTYKHLLLATVYRDFTAAAVMYGRTIISEFFLHSYLRSIRPREVGGFAGGKKFLFRGILFKLA---DGAVGPW-----AGSDEAAAKAAGHELRGHSYYAHAGVAGLHFSPMCILDYKGFRMVCAAQLPLGAATLISGSSDGGINVVGVGDAEVARVLEEAAARLRLRPHPC---RGTTVYSGADVEVHKGLDGNLYMLDLARSMPPEDPKV 750
PS P Q +P V+V + WN +FQ P+ +E YK+ L+A DF A +G+ IISE L ++I+P E+GG AGG+K+L + I+FK + A G W + SDE A K+AGHEL+G +++ + F I+DY G+R++ ++LP+ T++ GS+DGG V D +V + A ++ ++ H T +Y D+EVHKG DG YM+D AR+ PPE P++
Sbjct: 204 PSIEAKPRQHNIPEVEVFEPETECQSKYYEHTWNEIFQYLMDQPDTSE----YKYELMAKTATDFVYCANTFGKIIISERNLPDEQKTIKPLELGGVAGGQKYLCKDIIFKFVMDVEIAPGLWMYGDQSRSDEKAQKSAGHELKGLNHFMEHSEGIIRFPLAAIIDYGGYRLLAISRLPINKKTIVYGSNDGG-KTVHNSDTKVDTEMRRLAKKMNIKGHLVGLTSPTLIYGPGDIEVHKGTDGRYYMIDFARAFPPEYPQI 460
BLAST of jgi.p|Trimin1|159391 vs. uniprot
Match: A0A6H5KFE7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KFE7_9PHAE) HSP 1 Score: 144 bits (364), Expect = 6.330e-36 Identity = 74/151 (49.01%), Postives = 99/151 (65.56%), Query Frame = 1
Query: 301 KFLFRGILFKLADGAVGPWAGSDEAAAKAAGHELRGHSYYAHAGVAGLHFSPMCILDYKGFRMVCAAQLPLGAATLISGSSDGGINVVGVGDAEVARVLEEAAARLRLRPHPCRGTTVYSGADVEVHKGLDGNLYMLDLARSMPPEDPKVR 753
KF++RGILFKLADG+ GP+ G+DEAAAK AGH+LRG ++Y + GL ++ C++DYKGFRM A LP+ +L GS DGG V D +A+ L+ AA +L L H +YS D+E H G DG+ Y+LD AR+ PPE PK +
Sbjct: 2 KFVWRGILFKLADGSKGPYLGNDEAAAKGAGHDLRGATHYLATRIRGLRYALQCLIDYKGFRMTAQAVLPVNKESLRYGSDDGG-KTVHNDDESLAKKLKAAAKKLNLCTHRVNDKDMYSACDIEGHVGEDGSHYLLDFARTFPPESPKKK 151
BLAST of jgi.p|Trimin1|159391 vs. uniprot
Match: A0A6B2KXG4_9EUKA (Clu domain-containing protein (Fragment) n=1 Tax=Arcella intermedia TaxID=1963864 RepID=A0A6B2KXG4_9EUKA) HSP 1 Score: 145 bits (365), Expect = 8.080e-36 Identity = 86/219 (39.27%), Postives = 124/219 (56.62%), Query Frame = 1
Query: 91 NWNALFQEA-QALPEATEMERTYKHLLLATVYRDFTAAAVMYGRTIISEFFLHSYLRSIRPREVGGFAGGKKFLFRGILFKLADGAVGPWAGSDEAAAKAAGHELRGHSYYAHAGVAGLHFSPMCILDYKGFRMVCAAQLPLGAATLISGSSDGGINVVGVGDAEVARVLEEAAARLRLRPHPC--RGTTVYSGADVEVHKGLDGNLYMLDLARSMPPE 738
+WN FQ A+ ++ E L + +DF A MYG+ II E FL ++I P +VGG AGG K++ +GILFK + G + GSD A K+ GHEL+G Y A + GLH M I+DY+GFR+V + LP+ TL+ GSSDGG N+ D +V ++E A + ++ H + + + D+EVH+G D +Y+LD AR PPE
Sbjct: 50 HWNERFQMLLDAMDQSLESSNAGYLNELLNLAKDFINVAHMYGKIIICERFLPVEAQTIPPVQVGGIAGGTKYIKQGILFKFVVDSHGIY-GSDAVAMKSGGHELKGLIAYRQADIKGLHLPLMAIIDYRGFRVVAMSLLPISKKTLVYGSSDGGKNIYKT-DEKVNSLMESAGKIINIKEHKVELQNIELCAPCDIEVHRGFDDRIYVLDFARVFPPE 266 The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|159391 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
This mRNA is a part of the following gene feature(s):
The following exon feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
spliced messenger RNA >mRNA_3542 ID=mRNA_3542|Name=jgi.p|Trimin1|159391|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=765bp|location=Sequence derived from alignment at Contig_9:398671..402251+ (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon. ATGCTCTGCCCCCCCCCCCCCCCCCCTTCTTACCCCCTTCCCCCATATCAback to top protein sequence of jgi.p|Trimin1|159391 >Trimin1|159391|e_gw1.9.226.1 ID=Trimin1|159391|e_gw1.9.226.1|Name=jgi.p|Trimin1|159391|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=255bp MLCPPPPPPSYPLPPYQTGLPRVKVEDLGDNWNALFQEAQALPEATEMERback to top mRNA from alignment at Contig_9:398671..402251+ Legend: exonpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_3542 ID=mRNA_3542|Name=jgi.p|Trimin1|159391|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=3581bp|location=Sequence derived from alignment at Contig_9:398671..402251+ (Tribonema minus UTEX_B_3156 )back to top Coding sequence (CDS) from alignment at Contig_9:398671..402251+ >mRNA_3542 ID=mRNA_3542|Name=jgi.p|Trimin1|159391|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=765bp|location=Sequence derived from alignment at Contig_9:398671..402251+ (Tribonema minus UTEX_B_3156 )back to top |