mRNA_3542 (mRNA) Tribonema minus UTEX_B_3156

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
Namejgi.p|Trimin1|159391
Unique NamemRNA_3542
TypemRNA
OrganismTribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Homology
BLAST of jgi.p|Trimin1|159391 vs. uniprot
Match: A0A835YKN4_9STRA (CLU domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YKN4_9STRA)

HSP 1 Score: 508 bits (1309), Expect = 4.050e-182
Identity = 254/254 (100.00%), Postives = 254/254 (100.00%), Query Frame = 1
Query:    1 MLCPPPXXPSYPLPPYQTGLPRVKVEDLGDNWNALFQEAQALPEATEMERTYKHLLLATVYRDFTAAAVMYGRTIISEFFLHSYLRSIRPREVGGFAGGKKFLFRGILFKLADGAVGPWAGSDEAAAKAAGHELRGHSYYAHAGVAGLHFSPMCILDYKGFRMVCAAQLPLGAATLISGSSDGGINVVGVGDAEVARVLEEAAARLRLRPHPCRGTTVYSGADVEVHKGLDGNLYMLDLARSMPPEDPKVRTST 762
            MLCPPPXXPSYPLPPYQTGLPRVKVEDLGDNWNALFQEAQALPEATEMERTYKHLLLATVYRDFTAAAVMYGRTIISEFFLHSYLRSIRPREVGGFAGGKKFLFRGILFKLADGAVGPWAGSDEAAAKAAGHELRGHSYYAHAGVAGLHFSPMCILDYKGFRMVCAAQLPLGAATLISGSSDGGINVVGVGDAEVARVLEEAAARLRLRPHPCRGTTVYSGADVEVHKGLDGNLYMLDLARSMPPEDPKVRTST
Sbjct:    1 MLCPPPXXPSYPLPPYQTGLPRVKVEDLGDNWNALFQEAQALPEATEMERTYKHLLLATVYRDFTAAAVMYGRTIISEFFLHSYLRSIRPREVGGFAGGKKFLFRGILFKLADGAVGPWAGSDEAAAKAAGHELRGHSYYAHAGVAGLHFSPMCILDYKGFRMVCAAQLPLGAATLISGSSDGGINVVGVGDAEVARVLEEAAARLRLRPHPCRGTTVYSGADVEVHKGLDGNLYMLDLARSMPPEDPKVRTST 254          
BLAST of jgi.p|Trimin1|159391 vs. uniprot
Match: D8LF64_ECTSI (Clu domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LF64_ECTSI)

HSP 1 Score: 208 bits (529), Expect = 7.970e-64
Identity = 116/221 (52.49%), Postives = 147/221 (66.52%), Query Frame = 1
Query:   91 NWNALFQEAQALPEATEMERTYKHLLLATVYRDFTAAAVMYGRTIISEFFLHSYLRSIRPRE-VGGFAGGKKFLFRGILFKLADGAVGPWAGSDEAAAKAAGHELRGHSYYAHAGVAGLHFSPMCILDYKGFRMVCAAQLPLGAATLISGSSDGGINVVGVGDAE-VARVLEEAAARLRLRPHPCRGTTVYSGADVEVHKGLDGNLYMLDLARSMPPEDPK 747
            NWN LFQ A  LPE T  +   K   + TV RDF AAAV YG+TIISE+FL    +SI+P E +GG AGG KF++RGILFKLADG+ GP+ G+DEAAAK AGH+LRG ++Y  A + GL ++  C++DYKGFRM   A LP+ + TL  GSSD G  V    D+E +A+ L+  A +L LR H      +YS  D+E H G  G+ Y+LD ARS PPE PK
Sbjct:   10 NWNELFQSALDLPEDTPDQCYRKWERMTTVNRDFKAAAVTYGKTIISEYFLDLKHKSIKPNENLGGSAGGMKFVWRGILFKLADGSRGPYLGNDEAAAKGAGHDLRGATHYLDARIRGLRYALQCLIDYKGFRMTAQAVLPVSSETLRYGSSDAGRTVHN--DSENLAKKLKAVAKKLNLRTHWVNDKEMYSACDIEGHVGEGGSHYLLDFARSFPPESPK 228          
BLAST of jgi.p|Trimin1|159391 vs. uniprot
Match: D7G9G7_ECTSI (Clu domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G9G7_ECTSI)

HSP 1 Score: 210 bits (535), Expect = 5.320e-62
Identity = 104/170 (61.18%), Postives = 128/170 (75.29%), Query Frame = 1
Query:   55 GLPRVKVEDLGDNWNALFQEAQALPEATEMERTYKHLLLATVYRDFTAAAVMYGRTIISEFFLHSYLRSIRPREVGGFAGGKKFLFRGILFKLADGAVGPWAGSDEAAAKAAGHELRGHSYYAHAGVAGLHFSPMCILDYKGFRMVCAAQLPLGAATLISGSSDGGINVV 564
            G+ RV++ D GDNWN  +QEA +LP  T+M+  YK   L  VY DF   AV YGRTIISE+FLH Y++S++P+ +GG AGGKK+L+RGILFKLADG+ GP+ GSDEAAAKAAGHELRG S Y H GV GL   PMC+LDYKGFRM+  A LPLG  +L  G++DGG  V+
Sbjct:   87 GMARVQMSDRGDNWNDRWQEALSLPNKTKMDINYKRRSLDAVYSDFVHTAVTYGRTIISEYFLHEYMKSVKPKRLGGLAGGKKYLWRGILFKLADGSQGPYGGSDEAAAKAAGHELRGASEYLHTGV-GLCIPPMCLLDYKGFRMLAQAHLPLGETSLKMGTNDGGRTVL 255          
BLAST of jgi.p|Trimin1|159391 vs. uniprot
Match: D7G5G9_ECTSI (Clu domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G5G9_ECTSI)

HSP 1 Score: 209 bits (531), Expect = 7.060e-59
Identity = 112/219 (51.14%), Postives = 144/219 (65.75%), Query Frame = 1
Query:   91 NWNALFQEAQALPEATEMERTYKHLLLATVYRDFTAAAVMYGRTIISEFFLHSYLRSIRPREVGGFAGGKKFLFRGILFKLADGAVGPWAGSDEAAAKAAGHELRGHSYYAHAGVAGLHFSPMCILDYKGFRMVCAAQLPLGAATLISGSSDGGINVVGVGDAEVARVLEEAAARLRLRPHPCRGTTVYSGADVEVHKGLDGNLYMLDLARSMPPEDPK 747
            NWN LFQ A  LPE T  +   K   L TV RDF A AV YG+TIISE+FL +  +SIR +E+GG AGG KF++RGILFKLADG+ GP+ G+DEAAAK AGH+LRG ++Y    + GL ++  C++DYKGFRM   A LP+   +L  GSS+GG  V    D  +A+ L+ AA +L LR H      +YS  D+E H G   + Y+LD AR+ PPE PK
Sbjct:  247 NWNELFQSALDLPEETPDQCYRKWERLTTVNRDFKATAVTYGKTIISEYFLETEHKSIRLKELGGVAGGMKFVWRGILFKLADGSKGPYLGNDEAAAKGAGHDLRGATHYLATRIRGLRYALQCLIDYKGFRMTAQAVLPVNKESLRYGSSNGGKTVHNE-DESLAKKLKAAAKKLNLRTHRVNDKDMYSACDIEGHVGEGDSHYLLDFARTFPPESPK 464          
BLAST of jgi.p|Trimin1|159391 vs. uniprot
Match: A0A835ZAL9_9STRA (CLU domain-containing protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZAL9_9STRA)

HSP 1 Score: 181 bits (458), Expect = 2.460e-53
Identity = 106/208 (50.96%), Postives = 130/208 (62.50%), Query Frame = 1
Query:  133 ATEMERTY--KHLLLATVYRDFTAAAVMYGRTIISEFFLHSYLRSIRPREVGGFAGGKKFLFRGILFKLADGAVGPWAGSDEAAAKAAGHELRGHSYYAHAGVAGLHFSPMCILDYKGFRMVCAAQLPL-GAATLISGSSDGGINVVGVGDAEVARVLEEAAARLRLRPHPCRG-TTVYSGADVEVHKGLDGNLYMLDLARSMPPEDP 744
            AT   RT   K+  L  + +DF +AAV YGRTIISE+FL    +S+ P  VGG AGG+KFL RGILFKLADG+ GP+ GSDEAA KA  ++L+G  +     + GL  S   ++DYKGFRM   AQLPL   ATL  GS D G  VV  GD  +   L   AA+L L+ H  RG   +  G DVE H+G DGNLY++D AR  PPE P
Sbjct:    9 ATACRRTLCRKYQALTALNKDFISAAVTYGRTIISEYFLKEEAKSVCPSLVGGIAGGRKFLLRGILFKLADGSRGPYDGSDEAAGKALNNDLKGAVHLVKCSIPGLFCSLQALIDYKGFRMHAQAQLPLCSRATLRCGSCDAGATVVD-GDGALRHKLRLVAAQLNLKAHRGRGGAELQLGCDVEGHRGTDGNLYVIDAARVFPPESP 215          
BLAST of jgi.p|Trimin1|159391 vs. uniprot
Match: L8H8E7_ACACA (Tetratricopeptide repeat domain containing protein n=1 Tax=Acanthamoeba castellanii str. Neff TaxID=1257118 RepID=L8H8E7_ACACA)

HSP 1 Score: 149 bits (375), Expect = 4.090e-37
Identity = 86/223 (38.57%), Postives = 122/223 (54.71%), Query Frame = 1
Query:   91 NWNALFQEAQALPEATEMERTYKHLLLATVYRDFTAAAVMYGRTIISEFFLHSYLRSIRPREVGGFAGGKKFLFRGILFKLADGAVGPWAGSDEAAAKAAGHELRGHSYYAHAGVAGLHFSPMCILDYKGFRMVCAAQLPLGAATLISGSSDGGINVVGVGDAEVARVLEEAAARLRLRPHPCR-----GTTVYSGADVEVHKGLDGNLYMLDLARSMPPEDP 744
            NWN  FQ   +L  +       K   +A +  DF  AA  YG+ IISE  LH   ++I+P  VGG AGG+K++ +GI FK A    G + G DE A KAA H+L+G  +Y    + GLH   M ++DY GFR++    LP+ A TL  GS D G+ +    D  +  ++++AA ++ LR H        G  +Y   D+E HKG D   Y++D AR+ PPE P
Sbjct:  138 NWNEQFQRLLSLEPSAN-----KFAEMARLAHDFVFAAETYGKIIISELGLHESKKTIKPIAVGGQAGGEKYIVQGIFFKFATDIFGIYGG-DEYAMKAASHDLKGLIHYYSCQIPGLHVPLMALIDYLGFRLIAITILPINAGTLRYGSCDAGVTIH-CEDPTLKAMMKQAARKMHLRGHYVGTPEGLGKKIYGPVDIEAHKGTDDRYYVVDFARTFPPERP 353          
BLAST of jgi.p|Trimin1|159391 vs. uniprot
Match: A0A2P6NJP1_9EUKA (Uncharacterized protein n=1 Tax=Planoprotostelium fungivorum TaxID=1890364 RepID=A0A2P6NJP1_9EUKA)

HSP 1 Score: 147 bits (371), Expect = 1.480e-36
Identity = 89/226 (39.38%), Postives = 131/226 (57.96%), Query Frame = 1
Query:   91 NWNALFQEA----QALPEATEMERTYKHLLLATVYRDFTAAAVMYGRTIISEFFLHSYLRSIRPREVGGFAGGKKFLFRGILFKLADGAVGPWAGSDEAAAKAAGHELRGHSYYAHAGVAGLHFSPMCILDYKGFRMVCAAQLPLGAATLISGSSDGGINVVGVGDAEVARVLEEAAARLRLRPH-----PCRGTTVYSGADVEVHKGLDGNLYMLDLARSMPPED 741
            +WN  FQ+         +A E    Y  L  + + +DF   A  YG+ IISE +L    ++I+P ++GGFAGG K++ +GILFKLA  + G + GSD AAAK AG++L+G   Y + G++ LHF  M ++DY GFR+   + LP+ + T+I G+++GG  V    + +    +  A  +L L PH     P    T+YS AD+E H G DG  Y++D ARS PP D
Sbjct:  701 SWNQQFQQILENLNLCDDAQERSTIYSQL--SNLAQDFVHYAKTYGKLIISELYLPDDQKTIKPNDIGGFAGGVKYVVKGILFKLAVDSHGLY-GSDMAAAKVAGNDLKGLVQYFNLGISRLHFPLMALVDYMGFRIQALSLLPINSDTIIYGTANGGRTVFDK-NLKFNAKMRLAGKKLGLSPHTVGLYPKTSKTLYSCADMEGHDGKDGRFYLIDFARSFPPID 922          
BLAST of jgi.p|Trimin1|159391 vs. uniprot
Match: UPI0006450E29 (hypothetical protein n=1 Tax=Acytostelium subglobosum LB1 TaxID=1410327 RepID=UPI0006450E29)

HSP 1 Score: 146 bits (369), Expect = 2.510e-36
Identity = 91/262 (34.73%), Postives = 139/262 (53.05%), Query Frame = 1
Query:   25 PSYPLPPYQTGLPRVKVED---------LGDNWNALFQEAQALPEATEMERTYKHLLLATVYRDFTAAAVMYGRTIISEFFLHSYLRSIRPREVGGFAGGKKFLFRGILFKLA---DGAVGPW-----AGSDEAAAKAAGHELRGHSYYAHAGVAGLHFSPMCILDYKGFRMVCAAQLPLGAATLISGSSDGGINVVGVGDAEVARVLEEAAARLRLRPHPC---RGTTVYSGADVEVHKGLDGNLYMLDLARSMPPEDPKV 750
            PS    P Q  +P V+V +             WN +FQ     P+ +E    YK+ L+A    DF   A  +G+ IISE  L    ++I+P E+GG AGG+K+L + I+FK     + A G W     + SDE A K+AGHEL+G +++       + F    I+DY G+R++  ++LP+   T++ GS+DGG   V   D +V   +   A ++ ++ H       T +Y   D+EVHKG DG  YM+D AR+ PPE P++
Sbjct:  204 PSIEAKPRQHNIPEVEVFEPETECQSKYYEHTWNEIFQYLMDQPDTSE----YKYELMAKTATDFVYCANTFGKIIISERNLPDEQKTIKPLELGGVAGGQKYLCKDIIFKFVMDVEIAPGLWMYGDQSRSDEKAQKSAGHELKGLNHFMEHSEGIIRFPLAAIIDYGGYRLLAISRLPINKKTIVYGSNDGG-KTVHNSDTKVDTEMRRLAKKMNIKGHLVGLTSPTLIYGPGDIEVHKGTDGRYYMIDFARAFPPEYPQI 460          
BLAST of jgi.p|Trimin1|159391 vs. uniprot
Match: A0A6H5KFE7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KFE7_9PHAE)

HSP 1 Score: 144 bits (364), Expect = 6.330e-36
Identity = 74/151 (49.01%), Postives = 99/151 (65.56%), Query Frame = 1
Query:  301 KFLFRGILFKLADGAVGPWAGSDEAAAKAAGHELRGHSYYAHAGVAGLHFSPMCILDYKGFRMVCAAQLPLGAATLISGSSDGGINVVGVGDAEVARVLEEAAARLRLRPHPCRGTTVYSGADVEVHKGLDGNLYMLDLARSMPPEDPKVR 753
            KF++RGILFKLADG+ GP+ G+DEAAAK AGH+LRG ++Y    + GL ++  C++DYKGFRM   A LP+   +L  GS DGG   V   D  +A+ L+ AA +L L  H      +YS  D+E H G DG+ Y+LD AR+ PPE PK +
Sbjct:    2 KFVWRGILFKLADGSKGPYLGNDEAAAKGAGHDLRGATHYLATRIRGLRYALQCLIDYKGFRMTAQAVLPVNKESLRYGSDDGG-KTVHNDDESLAKKLKAAAKKLNLCTHRVNDKDMYSACDIEGHVGEDGSHYLLDFARTFPPESPKKK 151          
BLAST of jgi.p|Trimin1|159391 vs. uniprot
Match: A0A6B2KXG4_9EUKA (Clu domain-containing protein (Fragment) n=1 Tax=Arcella intermedia TaxID=1963864 RepID=A0A6B2KXG4_9EUKA)

HSP 1 Score: 145 bits (365), Expect = 8.080e-36
Identity = 86/219 (39.27%), Postives = 124/219 (56.62%), Query Frame = 1
Query:   91 NWNALFQEA-QALPEATEMERTYKHLLLATVYRDFTAAAVMYGRTIISEFFLHSYLRSIRPREVGGFAGGKKFLFRGILFKLADGAVGPWAGSDEAAAKAAGHELRGHSYYAHAGVAGLHFSPMCILDYKGFRMVCAAQLPLGAATLISGSSDGGINVVGVGDAEVARVLEEAAARLRLRPHPC--RGTTVYSGADVEVHKGLDGNLYMLDLARSMPPE 738
            +WN  FQ    A+ ++ E         L  + +DF   A MYG+ II E FL    ++I P +VGG AGG K++ +GILFK    + G + GSD  A K+ GHEL+G   Y  A + GLH   M I+DY+GFR+V  + LP+   TL+ GSSDGG N+    D +V  ++E A   + ++ H    +   + +  D+EVH+G D  +Y+LD AR  PPE
Sbjct:   50 HWNERFQMLLDAMDQSLESSNAGYLNELLNLAKDFINVAHMYGKIIICERFLPVEAQTIPPVQVGGIAGGTKYIKQGILFKFVVDSHGIY-GSDAVAMKSGGHELKGLIAYRQADIKGLHLPLMAIIDYRGFRVVAMSLLPISKKTLVYGSSDGGKNIYKT-DEKVNSLMESAGKIINIKEHKVELQNIELCAPCDIEVHRGFDDRIYVLDFARVFPPE 266          
The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|159391 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A835YKN4_9STRA4.050e-182100.00CLU domain-containing protein n=1 Tax=Tribonema mi... [more]
D8LF64_ECTSI7.970e-6452.49Clu domain-containing protein n=1 Tax=Ectocarpus s... [more]
D7G9G7_ECTSI5.320e-6261.18Clu domain-containing protein n=1 Tax=Ectocarpus s... [more]
D7G5G9_ECTSI7.060e-5951.14Clu domain-containing protein n=1 Tax=Ectocarpus s... [more]
A0A835ZAL9_9STRA2.460e-5350.96CLU domain-containing protein (Fragment) n=1 Tax=T... [more]
L8H8E7_ACACA4.090e-3738.57Tetratricopeptide repeat domain containing protein... [more]
A0A2P6NJP1_9EUKA1.480e-3639.38Uncharacterized protein n=1 Tax=Planoprotostelium ... [more]
UPI0006450E292.510e-3634.73hypothetical protein n=1 Tax=Acytostelium subglobo... [more]
A0A6H5KFE7_9PHAE6.330e-3649.01Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6B2KXG4_9EUKA8.080e-3639.27Clu domain-containing protein (Fragment) n=1 Tax=A... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Contig_9contigContig_9:398671..402251 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Tribonema minus UTEX_B_31562021-06-17
Properties
Property NameValue
ProteomeIdTrimin1|159391|e_gw1.9.226.1
DescriptionClustered mitochondria
COG categoryS
Max annot lvl2759|Eukaryota
EggNOG OGs2DZMV@1|root,2S753@2759|Eukaryota
Evalue8.72e-63
Seed ortholog2880.D7G9G7
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionCLU domain
Ec32 orthologEc-28_000850.1
TranscriptId159713
TrackFilteredModels1
ProteinId159391
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|159391gene_3542Tribonema minus UTEX_B_3156 geneContig_9 398671..402251 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
exon_3542_1exon_3542_1Tribonema minus UTEX_B_3156 exonContig_9 398671..398879 +
exon_3542_2exon_3542_2Tribonema minus UTEX_B_3156 exonContig_9 399759..399933 +
exon_3542_3exon_3542_3Tribonema minus UTEX_B_3156 exonContig_9 401502..401784 +
exon_3542_4exon_3542_4Tribonema minus UTEX_B_3156 exonContig_9 402154..402251 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
CDS_3542CDS_3542Tribonema minus UTEX_B_3156 CDSContig_9 398671..398879 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|159391Trimin1|159391|e_gw1.9.226.1Tribonema minus UTEX_B_3156 polypeptideContig_9 398671..402251 +


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>mRNA_3542 ID=mRNA_3542|Name=jgi.p|Trimin1|159391|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=765bp|location=Sequence derived from alignment at Contig_9:398671..402251+ (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon.  
ATGCTCTGCCCCCCCCCCCCCCCCCCTTCTTACCCCCTTCCCCCATATCA
AACAGGCCTGCCGCGTGTCAAGGTGGAGGATCTGGGCGACAACTGGAACG
CACTTTTCCAGGAGGCGCAGGCGCTGCCCGAGGCCACAGAGATGGAGCGC
ACGTACAAGCACCTGCTGCTGGCGACCGTGTACCGCGACTTCACGGCAGC
GGCCGTCATGTACGGCCGCACCATCATATCGGAGTTCTTCCTGCACAGCT
ACCTGCGCAGCATACGCCCGCGCGAGGTGGGGGGGTTTGCGGGGGGCAAG
AAGTTCCTGTTCCGCGGCATTCTCTTCAAGCTGGCGGACGGCGCGGTCGG
GCCTTGGGCGGGGAGCGATGAGGCGGCTGCAAAGGCGGCGGGGCACGAGC
TGCGCGGCCACAGCTACTACGCGCACGCGGGCGTCGCGGGCCTGCACTTC
TCCCCCATGTGCATCCTTGACTACAAGGGGTTCCGCATGGTGTGCGCGGC
GCAGCTGCCGCTCGGCGCAGCAACGCTCATCTCGGGGTCCAGCGACGGGG
GGATCAACGTGGTGGGGGTGGGGGACGCGGAGGTCGCGCGCGTTCTGGAG
GAGGCTGCAGCACGGCTCAGGCTGCGGCCGCACCCGTGCAGGGGGACGAC
GGTGTACAGCGGCGCAGATGTTGAGGTTCACAAGGGGCTGGACGGAAACC
TCTACATGCTCGACCTCGCACGCAGTATGCCGCCGGAAGACCCCAAGGTG
CGCACTTCAACGTAG
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protein sequence of jgi.p|Trimin1|159391

>Trimin1|159391|e_gw1.9.226.1 ID=Trimin1|159391|e_gw1.9.226.1|Name=jgi.p|Trimin1|159391|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=255bp
MLCPPPPPPSYPLPPYQTGLPRVKVEDLGDNWNALFQEAQALPEATEMER
TYKHLLLATVYRDFTAAAVMYGRTIISEFFLHSYLRSIRPREVGGFAGGK
KFLFRGILFKLADGAVGPWAGSDEAAAKAAGHELRGHSYYAHAGVAGLHF
SPMCILDYKGFRMVCAAQLPLGAATLISGSSDGGINVVGVGDAEVARVLE
EAAARLRLRPHPCRGTTVYSGADVEVHKGLDGNLYMLDLARSMPPEDPKV
RTST*
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mRNA from alignment at Contig_9:398671..402251+

Legend: exonpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_3542 ID=mRNA_3542|Name=jgi.p|Trimin1|159391|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=3581bp|location=Sequence derived from alignment at Contig_9:398671..402251+ (Tribonema minus UTEX_B_3156 )
ATGCTCTGCCCCCCCCCCCCCCCCCCTTCTTACCCCCTTCCCCCATATCA AACAGGCCTGCCGCGTGTCAAGGTGGAGGATCTGGGCGACAACTGGAACG CACTTTTCCAGGAGGCGCAGGCGCTGCCCGAGGCCACAGAGATGGAGCGC ACGTACAAGCACCTGCTGCTGGCGACCGTGTACCGCGACTTCACGGCAGC GGCCGTCATGTGAGTCACTTTGTGCGGCCGCACCGTCATTCATTCGCTAC CGAGCTGTCAGGTTGTGGCGCCGTCATTACGGAGTTCTGCCGATCCCTCA CCTTGATTTGGGCCTACGCTGCCAATCATCATCTGCTTGCGCACCTGCCA CCGGTGACGGTGTACCGCGACTTGACGGCAGTGGTCGTCATGTGAGCACG TACTTGAAAGCTTTGCTTTGAGCATCATCACGTGCTGAAGCATCATCATG TGCGTGTGATGTTGTTCAGCGACTTCACGGCAGCAGCCGTGTTGTAAGCA GCACTGACTGTTCAGCATCGTCACGTGATCAGCATCAACCATGAAGTTTC ACATGTTGCGCCTTCAGGCTATGGCTGCAGCATCACTCTGGAGTTCTGCT CATCCCTCTCCTCAATTCTGACTCTACACCGCCATTCAGGTACGGCTGGA CCACCATACATACCCATCCTAACCCTAACCCTAACCCTAGCACCACCAAT CAGTTTTCCTCTGAGCTCTCGGGTATGGCCGGAGTTCTTCCTAGCATCAT CTCAGCTCTGATATCAACAACGCCAATCATCCTTTCCTATCCATTCAGAG TGGTTGCAACCTAGCCCCTTACCCAAGCCCATCCCCCTACACCTCCTAAC CCTTGTCTGAACCCTAACCCTAGCACCGCCAATCAATTTCTTTCCGCGCT CGCAGGTACAGCAGCACCATCATACCGGAGTTCTTTCTAGCTATCGTCTC AACCCTAACCTCAACAACGCAATAATCCCCCCCCCCCATTCGCTCCCTTA CCCTTACCCAAGCCCAACCCCTTACACCTCCCAACCCTCATCTCAACCCT AACCTAGCATCGCCAATCATTCCCTTCCGCGCTCTCAGGTACGGCCGCAC CATCATATCGGAGTTCTTCCTGCACAGCTACCTGCGCAGCATACGCCCGC GCGAGGTGGGGGGGTTTGCGGGGGGCAAGAAGTTCCTGTTCCGCGGCATT CTCTTCAAGCTGGCGGACGGCGCGGTCGGGCCTTGGGCGGGGAGCGATGA GGCGGCTGCAAAGGTATGTAGTGCAAGGGGTATGTATGCGTGACCCTAAC CCTAGGTGGGGGAGTTTGTGGGGGGCAAGAAGCTCCTGTTCCGCGGAATA ATCTTCAAGTTGGCGGACGGCGCGGTCGGGCCCTGGGCGGGAGCGATGAG GCGGCTGCGAAGGTATGTATGGGGGGGGGGGAGGGGGGGGCGGTATGTAT ACGCTTGTGTAAGCCTAATCCTAGACGGTGCGAGGGGTATTTTTGCGTTT GCGTAACCCTAAGCCTAACCCTGACCCTAAACGCACCCTAAACACGCTGC TTATGTGACAGTTATTGGCTCGTGGTGTACATAGCGGGTATGTAGGTGCA GGGGGTATGTATGTGTAACCCTAACTCTAGTGTTAAACCCTAAATACGCT CTTCATGTGACAGTTCTTGGTTTAAGCCCTTATGGAAGCACGCACCCCCG CCTTGCAGAATGGTGTGTGGTGCAGGGGGGGCATGTGCGCGTTTGTGTAA CCCTAACTCTACTCTAACTCTGAGTCCAAATACGGCACTTACTTCACATT TATTGGCTCGTGTGCGCATACAGTATCATGCACGCCCGCCCTGTTGGCCC GTATGTTGAAGCACTTATGTACTGAACCGTTGCCTGCAAAGAACCACGCC AACTCCAACCCTAACCTCGCTAGTACATGGTACATGCTACCTCGCTAGTA CATGGTATGCAGTTATCGCCGATATCTGTCATTGGCATCAATCGCTGCAG GAGTTGAAGTACCCCCGCTTGTGTGCGCAACGACATTGATCAGAAGCTTG TGCGTGCTTGAAAAAAGAATGCCCTCAGTACATGTAGGCACCGCATTGCG ACTCATGGCCCTTGGCGTGTTGAAGTGTGTTAAAGGAACCCTAAGTCTAA TGAACCCTAATGCGAACCTTGCATACTCCTGGGCTACAGGTTCAAGGACT TGGCAGGTGTATGCACACGACATTGCTAATCCTAGCCCGGCTTGCAGCCT CCTATTTTCGGCCCTAACCCTAATCCTACCAGGCGGCGGGGCATAAGCTG TGCGGCTACAGTCACTATGCGCGGCTTCACTGGCTTGCCCTTCTCGCTAA AATCCTTCGCCGAGGTCGAATGGTCGAAGACCGTTCAAGCACTGCGTTGT GCGTGCTTGGAATTATGCAATCACTTTACACCGCACACACGCATCGTGGG CCGTACATTTGAATAGTACTGCGCCTCCCGTGTGCATGTTCGGTATCAAC AATCTAACCTCAAAGTAGCCTTAACCCCTAACCCTAACCCTAACCTTAAC CTCAAAGTAGCCCCCCTCAAAGTAGCGTTAACCTCAATCTCAACCCTAGC CCGACCAGGCAGCAGGGCACGAGCTGCGCGGCCACAGCTACTACGCGCAC GCGGGCGACGTCGGCCTGCCCTTCATGCCAATCTCCTTCGTTGAGGACAA ATGATCGAAGACCGTCAAAGCACTCTGGTGTGGGTGCGTCGATTCATGCA ACCTGCGTTTTCGGTAAAACCCATGCTAACCTCAATTCCAAGTAACCCCT AACCTCAAAACCCTAACCCTAACCCTACCAGGCGGCGGGGCACGAGCTGC GCGGCCACAGCTACTACGCGCACGCGGGCGTCGCGGGCCTGCACTTCTCC CCCATGTGCATCCTTGACTACAAGGGGTTCCGCATGGTGTGCGCGGCGCA GCTGCCGCTCGGCGCAGCAACGCTCATCTCGGGGTCCAGCGACGGGGGGA TCAACGTGGTGGGGGTGGGGGACGCGGAGGTCGCGCGCGTTCTGGAGGAG GCTGCAGCACGGCTCAGGCTGCGGCCGCACCCGTGCAGGGGGACGACGGT GTACAGCGGCGCAGGTGCGCATACATTGACTGTATTTCTGTTGAATGTAG TATGCATGTATGTGCTGGAGGAGGCTGCGGCACGGCTCAGGCAGCGGCCC GCACACGCCGTATAGCAGTGCCGGTGCGAAAACATGATCTCATGACCTGT CTGTATTATACTGTATGACAATTATGCTGCAGCCCAAGGCTGCGACTGCA CCTGCAACACAGCACGGCGGTGTACAGCGGCACAGCCGGATGGGGGTGTC ATCAGACGTTCAGCACCACCATCACTGCGTGCACCTGTGCTTGTGCTGCA CAACTACAACAAAGGGCACCATTTCTACACCCTAATATGCTTAAGAGTGC TGCTGCTGCTGCTGCTCTTGATATTTCCTGCAGATGTTGAGGTTCACAAG GGGCTGGACGGAAACCTCTACATGCTCGACCTCGCACGCAGTATGCCGCC GGAAGACCCCAAGGTGCGCACTTCAACGTAG
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Coding sequence (CDS) from alignment at Contig_9:398671..402251+

>mRNA_3542 ID=mRNA_3542|Name=jgi.p|Trimin1|159391|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=765bp|location=Sequence derived from alignment at Contig_9:398671..402251+ (Tribonema minus UTEX_B_3156 )
ATGCTCTGCCCCCCCCCCCCCCCCCCTTCTTACCCCCTTCCCCCATATCA
AACAGGCCTGCCGCGTGTCAAGGTGGAGGATCTGGGCGACAACTGGAACG
CACTTTTCCAGGAGGCGCAGGCGCTGCCCGAGGCCACAGAGATGGAGCGC
ACGTACAAGCACCTGCTGCTGGCGACCGTGTACCGCGACTTCACGGCAGC
GGCCGTCATGTACGGCCGCACCATCATATCGGAGTTCTTCCTGCACAGCT
ACCTGCGCAGCATACGCCCGCGCGAGGTGGGGGGGTTTGCGGGGGGCAAG
AAGTTCCTGTTCCGCGGCATTCTCTTCAAGCTGGCGGACGGCGCGGTCGG
GCCTTGGGCGGGGAGCGATGAGGCGGCTGCAAAGGCGGCGGGGCACGAGC
TGCGCGGCCACAGCTACTACGCGCACGCGGGCGTCGCGGGCCTGCACTTC
TCCCCCATGTGCATCCTTGACTACAAGGGGTTCCGCATGGTGTGCGCGGC
GCAGCTGCCGCTCGGCGCAGCAACGCTCATCTCGGGGTCCAGCGACGGGG
GGATCAACGTGGTGGGGGTGGGGGACGCGGAGGTCGCGCGCGTTCTGGAG
GAGGCTGCAGCACGGCTCAGGCTGCGGCCGCACCCGTGCAGGGGGACGAC
GGTGTACAGCGGCGCAGATGTTGAGGTTCACAAGGGGCTGGACGGAAACC
TCTACATGCTCGACCTCGCACGCAGTATGCCGCCGGAAGACCCCAAGGTG
CGCACTTCAACGTAG
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