mRNA_3538 (mRNA) Tribonema minus UTEX_B_3156

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
Namejgi.p|Trimin1|159461
Unique NamemRNA_3538
TypemRNA
OrganismTribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Homology
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BLAST of jgi.p|Trimin1|159461 vs. uniprot
Match: A0A835YS89_9STRA (Mitochondrial carrier domain-containing protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YS89_9STRA)

HSP 1 Score: 288 bits (738), Expect = 1.670e-98
Identity = 150/150 (100.00%), Postives = 150/150 (100.00%), Query Frame = 1 
Query:    1 LAGVINVLLTTPLWVANTRIKTAAAPANRKAPGLIGTLCLVYKEDGLAGLWAGTVPSLVLVTNPIIQFVAYDYLKRVLLGVRAARGGAAQAKLQLRAHEAFVLGAIAKALATVLTYPLQLAQSKMRAASRVSQQKVRICTCRMGRYMSPG 450
            LAGVINVLLTTPLWVANTRIKTAAAPANRKAPGLIGTLCLVYKEDGLAGLWAGTVPSLVLVTNPIIQFVAYDYLKRVLLGVRAARGGAAQAKLQLRAHEAFVLGAIAKALATVLTYPLQLAQSKMRAASRVSQQKVRICTCRMGRYMSPG
Sbjct:    1 LAGVINVLLTTPLWVANTRIKTAAAPANRKAPGLIGTLCLVYKEDGLAGLWAGTVPSLVLVTNPIIQFVAYDYLKRVLLGVRAARGGAAQAKLQLRAHEAFVLGAIAKALATVLTYPLQLAQSKMRAASRVSQQKVRICTCRMGRYMSPG 150
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BLAST of jgi.p|Trimin1|159461 vs. uniprot
Match: D7FNB1_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FNB1_ECTSI)

HSP 1 Score: 127 bits (318), Expect = 4.230e-32
Identity = 76/151 (50.33%), Postives = 96/151 (63.58%), Query Frame = 1 
Query:    1 LAGVINVLLTTPLWVANTRIKTAAAPANRKAPGLIGTLCLVYKEDGLAGLWAGTVPSLVLVTNPIIQFVAYDYLKRVLLGVR------------------------AARGGAAQAKLQLRAHEAFVLGAIAKALATVLTYPLQLAQSKMRA 381
            +AGVINVL TTPLWV+N RIK     A     GL  TL  + + +GLAGLW+GT PSLVLV+NPIIQFV Y+ LK+ L G R                         +RGGA +  + LR+HEAF+LGA AK ++T++TYPLQLAQ+K+RA
Sbjct:  121 IAGVINVLATTPLWVSNLRIK-----AGNGVGGLFSTLGSIGRHEGLAGLWSGTAPSLVLVSNPIIQFVVYETLKQAL-GRRHSHRNGEARRIITQPPDPRSAAGGGSRGGAGRPSVGLRSHEAFLLGATAKTISTLVTYPLQLAQAKLRA 265
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BLAST of jgi.p|Trimin1|159461 vs. uniprot
Match: UPI001ED8A215 (peroxisomal membrane protein PMP34 n=1 Tax=Ischnura elegans TaxID=197161 RepID=UPI001ED8A215)

HSP 1 Score: 120 bits (300), Expect = 4.300e-30
Identity = 73/134 (54.48%), Postives = 86/134 (64.18%), Query Frame = 1 
Query:    4 AGVINVLLTTPLWVANTRIKTAA--------APANR-KAPGLIGTLCLVYKEDGLAGLWAGTVPSLVLVTNPIIQFVAYDYLKRVLLGVRAARGGAAQAKLQLRAHEAFVLGAIAKALATVLTYPLQLAQSKMR 378
            AGVINVL TTPLWV NTR+K            P NR K  GLI  L  VY   G+  LWAGTVPSL+LV+NP IQF AY+ LKR LL    A G   Q      A  AF+LGAIAKA+AT++TYP+QL Q+++R
Sbjct:  115 AGVINVLTTTPLWVVNTRLKMQGIQSHNEERVPVNREKFDGLIDGLMKVYGRGGIPALWAGTVPSLILVSNPAIQFAAYEALKRHLLNPPGASGRLEQPS----ALVAFLLGAIAKAVATLITYPIQLIQTRLR 244
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BLAST of jgi.p|Trimin1|159461 vs. uniprot
Match: A0A8B8IRT1_9NEOP (peroxisomal membrane protein PMP34 n=3 Tax=Vanessa TaxID=42274 RepID=A0A8B8IRT1_9NEOP)

HSP 1 Score: 117 bits (292), Expect = 2.950e-29
Identity = 67/131 (51.15%), Postives = 86/131 (65.65%), Query Frame = 1 
Query:    1 LAGVINVLLTTPLWVANTRIKTAAAPANRKAPGLIGTLCLVYKEDGLAGLWAGTVPSLVLVTNPIIQFVAYDYLKRVLLGVRAARGGAAQAKLQLRAHEAFVLGAIAKALATVLTYPLQLAQSKMRAASRV 393
            LAG INVLLT+PLWV NTR+K      N     L   L ++ KE+G  GLW+GTVPSL+LV+NP IQF+ Y+ LKR ++            K    ++ AF+LGAIAKA+AT LTYPLQL QS++RA + V
Sbjct:  109 LAGSINVLLTSPLWVVNTRMKLQ----NNSYSNLFEGLYIILKEEGCKGLWSGTVPSLLLVSNPAIQFMVYESLKRKIVS-----------KGYFDSYTAFLLGAIAKAIATTLTYPLQLIQSRLRAGTSV 224
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BLAST of jgi.p|Trimin1|159461 vs. uniprot
Match: UPI001E273B42 (peroxisomal membrane protein PMP34 n=1 Tax=Melitaea cinxia TaxID=113334 RepID=UPI001E273B42)

HSP 1 Score: 116 bits (291), Expect = 4.160e-29
Identity = 63/131 (48.09%), Postives = 88/131 (67.18%), Query Frame = 1 
Query:    1 LAGVINVLLTTPLWVANTRIKTAAAPANRKAPGLIGTLCLVYKEDGLAGLWAGTVPSLVLVTNPIIQFVAYDYLKRVLLGVRAARGGAAQAKLQLRAHEAFVLGAIAKALATVLTYPLQLAQSKMRAASRV 393
            LAG +NVLLT+PLWV NTR+K          P L   L +++K++G+ GLW+GT+PSL+LV+NP IQF+ Y+ LKR L+            K    ++ AF+LGAIAKA+AT +TYPLQL QS++RA + +
Sbjct:  109 LAGSVNVLLTSPLWVVNTRMKFD----KYSYPNLFEGLYIIFKKEGMKGLWSGTIPSLLLVSNPAIQFMIYEALKRHLVS-----------KGHFSSYTAFLLGAIAKAIATTITYPLQLVQSRLRAGTSI 224
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BLAST of jgi.p|Trimin1|159461 vs. uniprot
Match: A0A8K0KL56_LADFU (Uncharacterized protein n=1 Tax=Ladona fulva TaxID=123851 RepID=A0A8K0KL56_LADFU)

HSP 1 Score: 116 bits (290), Expect = 5.610e-29
Identity = 66/134 (49.25%), Postives = 88/134 (65.67%), Query Frame = 1 
Query:    4 AGVINVLLTTPLWVANTRIKTAAAPANRKAP---------GLIGTLCLVYKEDGLAGLWAGTVPSLVLVTNPIIQFVAYDYLKRVLLGVRAARGGAAQAKLQLRAHEAFVLGAIAKALATVLTYPLQLAQSKMR 378
            AGV+NVL TTPLWV N ++K      N +           GLI  L  +Y+++G+AGLWAGTVPSL+LV+NP IQF  Y++LKR LL       G +    Q  A  AF+LGA+AKA+ATV+TYP+QL Q+++R
Sbjct:  115 AGVVNVLTTTPLWVVNIKLKMQGIQLNNEEQTVDRRNHYNGLIDGLKKIYEQNGIAGLWAGTVPSLLLVSNPAIQFATYEFLKRRLLNP-----GLSARIEQPSALTAFILGAMAKAIATVVTYPVQLLQTRLR 243
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BLAST of jgi.p|Trimin1|159461 vs. uniprot
Match: A0A821QB47_9NEOP (Hypothetical protein n=4 Tax=Pieris TaxID=7115 RepID=A0A821QB47_9NEOP)

HSP 1 Score: 116 bits (290), Expect = 5.850e-29
Identity = 63/129 (48.84%), Postives = 85/129 (65.89%), Query Frame = 1 
Query:    1 LAGVINVLLTTPLWVANTRIKTAAAPANRKAPGLIGTLCLVYKEDGLAGLWAGTVPSLVLVTNPIIQFVAYDYLKRVLLGVRAARGGAAQAKLQLRAHEAFVLGAIAKALATVLTYPLQLAQSKMRAAS 387
            +AG +NVLLT+PLWV NTRIK            L G L  ++K++GL GLW+GTVPSL+LV+NP IQF+ Y+ LKR  + +            +   + AF++GAIAKA+AT LTYPLQL QS++RA +
Sbjct:  109 IAGSLNVLLTSPLWVVNTRIKLG----KNNYKSLSGGLIELFKKEGLRGLWSGTVPSLLLVSNPAIQFMVYESLKRNFIAMN-----------RFNTYSAFIIGAIAKAIATTLTYPLQLIQSRLRAGT 222
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BLAST of jgi.p|Trimin1|159461 vs. uniprot
Match: A0A7S3UPZ8_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3UPZ8_HETAK)

HSP 1 Score: 116 bits (290), Expect = 1.140e-28
Identity = 69/147 (46.94%), Postives = 90/147 (61.22%), Query Frame = 1 
Query:    1 LAGVINVLLTTPLWVANTRIKTAAAPANRK----------APGLIGTLCLVYKEDGLAGLWAGTVPSLVLVTNPIIQFVAYDYLKRVLLGVRAARGGAAQAKLQLRAHEAFVLGAIAKALATVLTYPLQLAQSKMRAASRVSQQKVR 411
            +AG+I VL+T PLWVA+TRIK     + RK            GL   +  + +++GL  LW GT+PSLVLV+NPIIQFV Y+ +K  +L  R A G     ++ L   EAF+LGA AKA ATV TYPLQLAQ+K+R     +  K R
Sbjct:  100 IAGIITVLVTAPLWVASTRIKMGQHASKRKENNRSAKPPQTAGLASKIIEILRKEGLKALWDGTIPSLVLVSNPIIQFVVYEMVKARVLARRLAVGSG---QMGLTGTEAFLLGAAAKACATVATYPLQLAQNKLRVKETDNNGKPR 243
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BLAST of jgi.p|Trimin1|159461 vs. uniprot
Match: A0A2W1BJF5_HELAM (Uncharacterized protein n=5 Tax=Noctuidae TaxID=7100 RepID=A0A2W1BJF5_HELAM)

HSP 1 Score: 114 bits (286), Expect = 2.340e-28
Identity = 64/129 (49.61%), Postives = 85/129 (65.89%), Query Frame = 1 
Query:    1 LAGVINVLLTTPLWVANTRIKTAAAPANRKAPGLIGTLCLVYKEDGLAGLWAGTVPSLVLVTNPIIQFVAYDYLKRVLLGVRAARGGAAQAKLQLRAHEAFVLGAIAKALATVLTYPLQLAQSKMRAAS 387
            +AG INVLLT+PLWV NTR+K   +  N    GLI     ++K++G  GLW+GTVPSL+LV+NP IQF+ Y+ LKR L+            K       AF++GA+AKA+AT LTYPLQL QS++RA +
Sbjct:  110 IAGSINVLLTSPLWVVNTRMKLEKSTYNSLTEGLID----LFKKEGARGLWSGTVPSLLLVSNPAIQFMVYEALKRQLIS-----------KGLFDTFSAFLIGAVAKAVATTLTYPLQLVQSRLRAGT 223
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BLAST of jgi.p|Trimin1|159461 vs. uniprot
Match: A0A8J9V1V5_9NEOP ((lesser marbled fritillary) hypothetical protein (Fragment) n=1 Tax=Brenthis ino TaxID=405034 RepID=A0A8J9V1V5_9NEOP)

HSP 1 Score: 114 bits (284), Expect = 4.630e-28
Identity = 63/129 (48.84%), Postives = 87/129 (67.44%), Query Frame = 1 
Query:    1 LAGVINVLLTTPLWVANTRIKTAAAPANRKAPGLIGTLCLVYKEDGLAGLWAGTVPSLVLVTNPIIQFVAYDYLKRVLLGVRAARGGAAQAKLQLRAHEAFVLGAIAKALATVLTYPLQLAQSKMRAAS 387
            LAG INVLLT+PLWV NTR+K      +    GL    C ++K++G++GLW+GT+PSL+LV+NP IQF+ Y+ LKR L+            K    +  AF++GA+AKA+AT LTYPLQL QS++RA +
Sbjct:  110 LAGSINVLLTSPLWVVNTRMKLEKNTYSNLFEGL----CDIFKKEGMSGLWSGTLPSLLLVSNPAIQFMVYESLKRKLV-----------TKGYFDSFTAFLIGALAKAIATTLTYPLQLVQSRLRAGT 223
The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|159461 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A835YS89_9STRA1.670e-98100.00Mitochondrial carrier domain-containing protein (F... [more]
D7FNB1_ECTSI4.230e-3250.33Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
UPI001ED8A2154.300e-3054.48peroxisomal membrane protein PMP34 n=1 Tax=Ischnur... [more]
A0A8B8IRT1_9NEOP2.950e-2951.15peroxisomal membrane protein PMP34 n=3 Tax=Vanessa... [more]
UPI001E273B424.160e-2948.09peroxisomal membrane protein PMP34 n=1 Tax=Melitae... [more]
A0A8K0KL56_LADFU5.610e-2949.25Uncharacterized protein n=1 Tax=Ladona fulva TaxID... [more]
A0A821QB47_9NEOP5.850e-2948.84Hypothetical protein n=4 Tax=Pieris TaxID=7115 Rep... [more]
A0A7S3UPZ8_HETAK1.140e-2846.94Hypothetical protein n=1 Tax=Heterosigma akashiwo ... [more]
A0A2W1BJF5_HELAM2.340e-2849.61Uncharacterized protein n=5 Tax=Noctuidae TaxID=71... [more]
A0A8J9V1V5_9NEOP4.630e-2848.84(lesser marbled fritillary) hypothetical protein (... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Contig_9contigContig_9:366798..368005 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Tribonema minus UTEX_B_31562021-06-17
Properties
Property NameValue
ProteomeIdTrimin1|159461|e_gw1.9.203.1
KEGG TC2.A.29.20.1
BRITEko00000,ko00001,ko02000
KEGG Pathwayko04146,map04146
KEGG koko:K13354
DescriptionFMN transmembrane transporter activity
COG categoryU
Max annot lvl2759|Eukaryota
EggNOG OGsCOG4266@1|root,KOG0769@2759|Eukaryota
Evalue6.94e-33
Seed ortholog2880.D7FNB1
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionMitochondrial substrate/solute carrier
Ec32 orthologEc-24_000080.1
TranscriptId159783
TrackFilteredModels1
ProteinId159461
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|159461gene_3538Tribonema minus UTEX_B_3156 geneContig_9 366798..368005 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|159461Trimin1|159461|e_gw1.9.203.1Tribonema minus UTEX_B_3156 polypeptideContig_9 366798..368005 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
exon_3538_3exon_3538_3Tribonema minus UTEX_B_3156 exonContig_9 366798..366980 -
exon_3538_2exon_3538_2Tribonema minus UTEX_B_3156 exonContig_9 367610..367798 -
exon_3538_1exon_3538_1Tribonema minus UTEX_B_3156 exonContig_9 367925..368005 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
CDS_3538CDS_3538Tribonema minus UTEX_B_3156 CDSContig_9 367925..368005 -


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>mRNA_3538 ID=mRNA_3538|Name=jgi.p|Trimin1|159461|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=453bp|location=Sequence derived from alignment at Contig_9:366798..368005- (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon.  
CTCGCAGGCGTCATCAACGTCCTGCTCACCACGCCGCTGTGGGTCGCCAA
CACGCGCATCAAGACCGCCGCGGCGCCCGCCAACCGGAAGGCACCGGGGT
TGATAGGGACGCTGTGCCTGGTGTATAAGGAGGACGGACTGGCGGGGCTG
TGGGCGGGGACTGTTCCGAGCCTGGTCCTCGTTACGAACCCCATAATACA
GTTTGTGGCGTACGACTATCTGAAGCGCGTGCTTCTGGGGGTGCGCGCGG
CGCGGGGGGGCGCGGCGCAGGCAAAACTTCAACTGCGCGCGCACGAGGCC
TTCGTGCTGGGCGCCATCGCCAAGGCGCTGGCCACGGTGCTCACGTACCC
GCTGCAGCTCGCGCAGTCCAAGATGCGTGCCGCCTCGCGCGTCAGCCAGC
AGAAGGTACGTATATGTACATGTCGCATGGGTAGGTATATGTCACCTGGG
TAG
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protein sequence of jgi.p|Trimin1|159461

>Trimin1|159461|e_gw1.9.203.1 ID=Trimin1|159461|e_gw1.9.203.1|Name=jgi.p|Trimin1|159461|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=151bp
LAGVINVLLTTPLWVANTRIKTAAAPANRKAPGLIGTLCLVYKEDGLAGL
WAGTVPSLVLVTNPIIQFVAYDYLKRVLLGVRAARGGAAQAKLQLRAHEA
FVLGAIAKALATVLTYPLQLAQSKMRAASRVSQQKVRICTCRMGRYMSPG
*
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mRNA from alignment at Contig_9:366798..368005-

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_3538 ID=mRNA_3538|Name=jgi.p|Trimin1|159461|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=1208bp|location=Sequence derived from alignment at Contig_9:366798..368005- (Tribonema minus UTEX_B_3156 )
CTCGCAGGCGTCATCAACGTCCTGCTCACCACGCCGCTGTGGGTCGCCAA
CACGCGCATCAAGACCGCCGCGGCGCCCGCCGTGCCGCTCCCCGACGCCC
CCCCCGCCCCCCCCCCAGGGGGACGCCAGGACCTAGAGGGGGGCCCGGAA
GCCCCCCTGCCCTCCACCCCCCCTGCAACAAATGGCGTCCCGTGCACCTT
GCCTCAGAACCGGAAGGCACCGGGGTTGATAGGGACGCTGTGCCTGGTGT
ATAAGGAGGACGGACTGGCGGGGCTGTGGGCGGGGACTGTTCCGAGCCTG
GTCCTCGTTACGAACCCCATAATACAGTTTGTGGCGTACGACTATCTGAA
GCGCGTGCTTCTGGGGGTGCGCGCGGCGCGGGGGGGCGCGGCGCAGGTGA
GCTGCTGCATGTAGATAAGACTCCTTTGGAAGCTGAATGTATTGTGCCAT
GAGCAGTTCACTCGTGTTGGGCTTGGCGCTATGCCGACACCCGACGAACA
GTAAGTCATTTGTAGTTCAGCCAGATACTTGAATGCCGTGTTGTAGCAGC
TGCCATGCTCTTATGGGTTGCGGTTGGCAGGGAATTTCTGTATAGTTGTA
CAATCACTGTGGCGGTTGTGCACACTGCTGCGGCTTACTTTACAGCAACT
TCAAGTCCGTGCTGCAGACCAGCGATGGTTTACTTGTATGACATCGGTGG
AACCCACTCTGCCGTGTCACGTCATGCTTCGACCGAAGCTGCAGCGGCAG
TGCTCATTTGCATGCTGCGGCGCGCAACAGCGTGACGACGAGCGTATCCT
GTTCAACGTCATGTCACGCAAGTTCGTCATGGTCCGCACCGCGTGCACGG
CCTGACTGCGATGCCGGCACTTTGGGGCAAACTTCAACTGCGCACTTCAA
CTGTGCACGCTAGACGCTCCTGTACGCACGAGGCACTGCTTGGAGCAAAG
ACATGCATTTCCGACATGAAAATTAACCATTGTCACTGTCCGTACCGCAC
TCGTCGCCTCGCCGCGTGTTGGCAGGCAAAACTTCAACTGCGCGCGCACG
AGGCCTTCGTGCTGGGCGCCATCGCCAAGGCGCTGGCCACGGTGCTCACG
TACCCGCTGCAGCTCGCGCAGTCCAAGATGCGTGCCGCCTCGCGCGTCAG
CCAGCAGAAGGTACGTATATGTACATGTCGCATGGGTAGGTATATGTCAC
CTGGGTAG
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Coding sequence (CDS) from alignment at Contig_9:366798..368005-

>mRNA_3538 ID=mRNA_3538|Name=jgi.p|Trimin1|159461|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=453bp|location=Sequence derived from alignment at Contig_9:366798..368005- (Tribonema minus UTEX_B_3156 )
CTCGCAGGCGTCATCAACGTCCTGCTCACCACGCCGCTGTGGGTCGCCAA
CACGCGCATCAAGACCGCCGCGGCGCCCGCCAACCGGAAGGCACCGGGGT
TGATAGGGACGCTGTGCCTGGTGTATAAGGAGGACGGACTGGCGGGGCTG
TGGGCGGGGACTGTTCCGAGCCTGGTCCTCGTTACGAACCCCATAATACA
GTTTGTGGCGTACGACTATCTGAAGCGCGTGCTTCTGGGGGTGCGCGCGG
CGCGGGGGGGCGCGGCGCAGGCAAAACTTCAACTGCGCGCGCACGAGGCC
TTCGTGCTGGGCGCCATCGCCAAGGCGCTGGCCACGGTGCTCACGTACCC
GCTGCAGCTCGCGCAGTCCAAGATGCGTGCCGCCTCGCGCGTCAGCCAGC
AGAAGGTACGTATATGTACATGTCGCATGGGTAGGTATATGTCACCTGGG
TAG
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