mRNA_3536 (mRNA) Tribonema minus UTEX_B_3156

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
Namejgi.p|Trimin1|159492
Unique NamemRNA_3536
TypemRNA
OrganismTribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Homology
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BLAST of jgi.p|Trimin1|159492 vs. uniprot
Match: A0A835YHG9_9STRA (Ankyrin repeat-containing domain protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YHG9_9STRA)

HSP 1 Score: 100 bits (248), Expect = 3.360e-26
Identity = 73/73 (100.00%), Postives = 73/73 (100.00%), Query Frame = 1 
Query:    1 LLGRGASVTATDHAANTALHWASFAGNVDVIRLLARCGAPLDXXXXXXXXXXXXXXXXXXXXXVQVGAKRWCC 219
            LLGRGASVTATDHAANTALHWASFAGNVDVIRLLARCGAPLDXXXXXXXXXXXXXXXXXXXXXVQVGAKRWCC
Sbjct:    1 LLGRGASVTATDHAANTALHWASFAGNVDVIRLLARCGAPLDXXXXXXXXXXXXXXXXXXXXXVQVGAKRWCC 73
The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|159492 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A835YHG9_9STRA3.360e-26100.00Ankyrin repeat-containing domain protein n=1 Tax=T... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Contig_9contigContig_9:351401..351622 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Tribonema minus UTEX_B_31562021-06-17
Properties
Property NameValue
ProteomeIdTrimin1|159492|e_gw1.9.182.1
BRITEko00000
KEGG koko:K06867
DescriptionAnkyrin repeats (many copies)
COG categoryS
Max annot lvl4751|Fungi
EggNOG OGsCOG0666@1|root,KOG0504@2759|Eukaryota,39U21@33154|Opisthokonta,3P4X4@4751|Fungi,3QWDV@4890|Ascomycota,20DYD@147545|Eurotiomycetes,3B7AM@33183|Onygenales,3FNQM@34383|Onygenales incertae sedis
Evalue0.000356
Seed ortholog199306.XP_003066516.1
Hectar predicted targeting categoryother localisation
TranscriptId159814
TrackFilteredModels1
ProteinId159492
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|159492gene_3536Tribonema minus UTEX_B_3156 geneContig_9 351401..351622 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
exon_3536_1exon_3536_1Tribonema minus UTEX_B_3156 exonContig_9 351401..351622 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
CDS_3536CDS_3536Tribonema minus UTEX_B_3156 CDSContig_9 351401..351622 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|159492Trimin1|159492|e_gw1.9.182.1Tribonema minus UTEX_B_3156 polypeptideContig_9 351401..351622 -


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>mRNA_3536 ID=mRNA_3536|Name=jgi.p|Trimin1|159492|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=222bp|location=Sequence derived from alignment at Contig_9:351401..351622- (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon.  
CTGCTCGGGCGCGGCGCGTCCGTAACCGCCACCGACCACGCCGCTAACAC
GGCGCTGCACTGGGCGTCGTTTGCGGGCAACGTCGACGTCATTCGCCTGC
TAGCGCGATGCGGCGCTCCGCTGGATGCTGCAAATCAGGACGGTGATACC
GCGCTGCACTTTGCGTCGAAGTGGGCGCGCCCGGATGTCGTACAGGTCGG
TGCCAAACGGTGGTGCTGTTAG
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protein sequence of jgi.p|Trimin1|159492

>Trimin1|159492|e_gw1.9.182.1 ID=Trimin1|159492|e_gw1.9.182.1|Name=jgi.p|Trimin1|159492|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=74bp
LLGRGASVTATDHAANTALHWASFAGNVDVIRLLARCGAPLDAANQDGDT
ALHFASKWARPDVVQVGAKRWCC*
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mRNA from alignment at Contig_9:351401..351622-

Legend: exonpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_3536 ID=mRNA_3536|Name=jgi.p|Trimin1|159492|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=222bp|location=Sequence derived from alignment at Contig_9:351401..351622- (Tribonema minus UTEX_B_3156 )
CTGCTCGGGCGCGGCGCGTCCGTAACCGCCACCGACCACGCCGCTAACAC
GGCGCTGCACTGGGCGTCGTTTGCGGGCAACGTCGACGTCATTCGCCTGC
TAGCGCGATGCGGCGCTCCGCTGGATGCTGCAAATCAGGACGGTGATACC
GCGCTGCACTTTGCGTCGAAGTGGGCGCGCCCGGATGTCGTACAGGTCGG
TGCCAAACGGTGGTGCTGTTAG
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Coding sequence (CDS) from alignment at Contig_9:351401..351622-

>mRNA_3536 ID=mRNA_3536|Name=jgi.p|Trimin1|159492|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=222bp|location=Sequence derived from alignment at Contig_9:351401..351622- (Tribonema minus UTEX_B_3156 )
CTGCTCGGGCGCGGCGCGTCCGTAACCGCCACCGACCACGCCGCTAACAC
GGCGCTGCACTGGGCGTCGTTTGCGGGCAACGTCGACGTCATTCGCCTGC
TAGCGCGATGCGGCGCTCCGCTGGATGCTGCAAATCAGGACGGTGATACC
GCGCTGCACTTTGCGTCGAAGTGGGCGCGCCCGGATGTCGTACAGGTCGG
TGCCAAACGGTGGTGCTGTTAG
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