mRNA_3521 (mRNA) Tribonema minus UTEX_B_3156

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
Namejgi.p|Trimin1|347184
Unique NamemRNA_3521
TypemRNA
OrganismTribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Homology
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BLAST of jgi.p|Trimin1|347184 vs. uniprot
Match: A0A835YHG1_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YHG1_9STRA)

HSP 1 Score: 257 bits (657), Expect = 1.700e-85
Identity = 134/134 (100.00%), Postives = 134/134 (100.00%), Query Frame = 3 
Query:  120 MTHNRRPSLLRAESGDEDAAAASQPVSVAEEKKEETKQEVVPMDMSLPTINLDAKDQDKSYPIDFPAYGLLSLSTVVAIAFVGSIFEVAGPSPLLGYVPTYIIGALSLPGFIFLFYAAIKKGQAEAEEDDDDFY 521
            MTHNRRPSLLRAESGDEDAAAASQPVSVAEEKKEETKQEVVPMDMSLPTINLDAKDQDKSYPIDFPAYGLLSLSTVVAIAFVGSIFEVAGPSPLLGYVPTYIIGALSLPGFIFLFYAAIKKGQAEAEEDDDDFY
Sbjct:    1 MTHNRRPSLLRAESGDEDAAAASQPVSVAEEKKEETKQEVVPMDMSLPTINLDAKDQDKSYPIDFPAYGLLSLSTVVAIAFVGSIFEVAGPSPLLGYVPTYIIGALSLPGFIFLFYAAIKKGQAEAEEDDDDFY 134
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BLAST of jgi.p|Trimin1|347184 vs. uniprot
Match: D8LJZ9_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LJZ9_ECTSI)

HSP 1 Score: 103 bits (257), Expect = 3.600e-24
Identity = 53/73 (72.60%), Postives = 57/73 (78.08%), Query Frame = 3 
Query:  300 YPIDFPAYGLLSLSTVVAIAFVGSIFEVAGPSPLLGYVPTYIIGALSLPGFIFLFYAAIKKGQAEAEEDDDDF 518
            YPI  P+Y LL L+TVV+IAF GSIFEV G  P LGY  TYIIG LSLP FIFLFYAAIKKG+AE EEDD  F
Sbjct:  117 YPIPLPSYLLLVLATVVSIAFTGSIFEVTGGHPELGYTATYIIGTLSLPTFIFLFYAAIKKGKAEVEEDDAKF 189
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BLAST of jgi.p|Trimin1|347184 vs. uniprot
Match: A0A7S2P364_9STRA (Hypothetical protein n=1 Tax=Skeletonema marinoi TaxID=267567 RepID=A0A7S2P364_9STRA)

HSP 1 Score: 77.4 bits (189), Expect = 6.650e-15
Identity = 40/79 (50.63%), Postives = 56/79 (70.89%), Query Frame = 3 
Query:  282 KDQDKSYPIDFPAYGLLSLSTVVAIAFVGSIFEVAGPSPLLGYVPTYIIGALSLPGFIFLFYAAIKKGQAEAEEDDDDF 518
            +++ ++YPID P+  LL+ S V+AI+ +GS+FE+AG +P LG+  T  I AL LP  +FL YAAI KG AE EE D +F
Sbjct:   35 EEELQAYPIDLPSPILLATSMVLAISSIGSLFELAGGTPKLGFAVTAAITALGLPISVFLIYAAILKGSAETEEADREF 113
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BLAST of jgi.p|Trimin1|347184 vs. uniprot
Match: A0A7S2XVJ4_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2XVJ4_9STRA)

HSP 1 Score: 77.4 bits (189), Expect = 3.980e-14
Identity = 37/69 (53.62%), Postives = 51/69 (73.91%), Query Frame = 3 
Query:  306 IDFPAYGLLSLSTVVAIAFVGSIFEVAGPSPLLGYVPTYIIGALSLPGFIFLFYAAIKKGQAEAEEDDD 512
            +  PAY  L +S VVAIAF+G+IFEV+G  PLLG+  T+ I   S PGF++LFY ++K+GQ E +ED+D
Sbjct:  125 LPLPAYLYLVVSCVVAIAFIGTIFEVSGGKPLLGFPLTWAIMVASGPGFLYLFYCSLKRGQIEEKEDND 193
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BLAST of jgi.p|Trimin1|347184 vs. uniprot
Match: A0A7S4JDB9_9STRA (Hypothetical protein n=1 Tax=Odontella aurita TaxID=265563 RepID=A0A7S4JDB9_9STRA)

HSP 1 Score: 75.1 bits (183), Expect = 1.480e-13
Identity = 39/74 (52.70%), Postives = 51/74 (68.92%), Query Frame = 3 
Query:  297 SYPIDFPAYGLLSLSTVVAIAFVGSIFEVAGPSPLLGYVPTYIIGALSLPGFIFLFYAAIKKGQAEAEEDDDDF 518
            +YP++ P+  LL  S ++AIA +GSIFE++G +P  G  PT  I A+ LP  +FLFYAAI KG AE EEDD  F
Sbjct:   89 NYPLNVPSPLLLGSSMILAIASIGSIFELSGGNPSNGVGPTAAIAAIGLPTCLFLFYAAIMKGIAETEEDDKAF 162
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BLAST of jgi.p|Trimin1|347184 vs. uniprot
Match: A0A2V3IZS2_9FLOR (Uncharacterized protein n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3IZS2_9FLOR)

HSP 1 Score: 68.6 bits (166), Expect = 1.840e-11
Identity = 37/68 (54.41%), Postives = 47/68 (69.12%), Query Frame = 3 
Query:  303 PIDFPAYGLLSLSTVVAIAFVGSIFEVAGPSPLLGYVPTYIIGALSLPGFIFLFYAAIKKGQAEAEED 506
            PI+ P+  LL  S+V+AIA +G +FE+ G  P  G+  T  I  +SLP F+FLFYAAIKKGQ EA ED
Sbjct:   58 PINAPSGVLLLSSSVLAIAAIGCVFELTGGHPTYGFNVTAGILTVSLPSFLFLFYAAIKKGQIEALED 125
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BLAST of jgi.p|Trimin1|347184 vs. uniprot
Match: A0A7S2C8R0_9STRA (Hypothetical protein n=1 Tax=Florenciella parvula TaxID=236787 RepID=A0A7S2C8R0_9STRA)

HSP 1 Score: 67.8 bits (164), Expect = 1.110e-10
Identity = 38/69 (55.07%), Postives = 46/69 (66.67%), Query Frame = 3 
Query:  315 PAYGLLSLSTVVAIAFVGSIFEV---AGPSPLLGYVPTYIIGALSLPGFIFLFYAAIKKGQAEAEEDDD 512
            P+YG L  S ++AIAFVG IF++     P+P  G   T II   S P +IFLF AAIKKGQ EAEEDD+
Sbjct:  108 PSYGFLGSSVLLAIAFVGCIFQLFYDKPPAPYFGVPITSIIFVFSGPTWIFLFIAAIKKGQKEAEEDDE 176
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BLAST of jgi.p|Trimin1|347184 vs. uniprot
Match: A0A7S0BKC5_9RHOD (Hypothetical protein n=2 Tax=Rhodosorus marinus TaxID=101924 RepID=A0A7S0BKC5_9RHOD)

HSP 1 Score: 64.7 bits (156), Expect = 5.030e-10
Identity = 31/67 (46.27%), Postives = 46/67 (68.66%), Query Frame = 3 
Query:  303 PIDFPAYGLLSLSTVVAIAFVGSIFEVAGPSPLLGYVPTYIIGALSLPGFIFLFYAAIKKGQAEAEE 503
            P++ P+  LL L++++AI+ +G IFE++   P  G   T  I A S PGF+F +YAAIKKGQ EA++
Sbjct:   58 PVNLPSSALLGLASILAISTIGCIFEISSGQPQYGTPITVGILAFSAPGFLFSYYAAIKKGQYEADQ 124
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BLAST of jgi.p|Trimin1|347184 vs. uniprot
Match: M1VLL8_CYAM1 (Uncharacterized protein n=1 Tax=Cyanidioschyzon merolae (strain NIES-3377 / 10D) TaxID=280699 RepID=M1VLL8_CYAM1)

HSP 1 Score: 64.3 bits (155), Expect = 9.610e-10
Identity = 34/76 (44.74%), Postives = 51/76 (67.11%), Query Frame = 3 
Query:  276 DAKDQDKSYPIDFPAYGLLSLSTVVAIAFVGSIFEVAGPSPLLGYVPTYIIGALSLPGFIFLFYAAIKKGQAEAEE 503
            D K     +PI  PAYG L +S+V+AIA +GS+FE++   P  G V T  + ALSLPGF+  F+ A++KG+ E+++
Sbjct:   65 DEKPAYLRFPI--PAYGYLGISSVLAIAAIGSVFELSSGKPQYGVVFTASVLALSLPGFLATFWLALEKGRDESDQ 138
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BLAST of jgi.p|Trimin1|347184 vs. uniprot
Match: M2XU10_GALSU (Uncharacterized protein n=2 Tax=Galdieria sulphuraria TaxID=130081 RepID=M2XU10_GALSU)

HSP 1 Score: 64.3 bits (155), Expect = 1.260e-9
Identity = 34/65 (52.31%), Postives = 46/65 (70.77%), Query Frame = 3 
Query:  303 PIDFPAYGLLSLSTVVAIAFVGSIFEVAGPSPLLGYVPTYIIGALSLPGFIFLFYAAIKKGQAEA 497
            P++ P+  LL +S V+AIAFVGSIFE++   P  G   T +I   SLP F+FLFYAAI+KG+ E+
Sbjct:   81 PLNVPSGILLGVSCVLAIAFVGSIFELSSGHPQYGRELTSVILVSSLPSFLFLFYAAIQKGKDES 145
The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|347184 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 16
Match NameE-valueIdentityDescription
A0A835YHG1_9STRA1.700e-85100.00Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
D8LJZ9_ECTSI3.600e-2472.60Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A7S2P364_9STRA6.650e-1550.63Hypothetical protein n=1 Tax=Skeletonema marinoi T... [more]
A0A7S2XVJ4_9STRA3.980e-1453.62Hypothetical protein n=1 Tax=Fibrocapsa japonica T... [more]
A0A7S4JDB9_9STRA1.480e-1352.70Hypothetical protein n=1 Tax=Odontella aurita TaxI... [more]
A0A2V3IZS2_9FLOR1.840e-1154.41Uncharacterized protein n=1 Tax=Gracilariopsis cho... [more]
A0A7S2C8R0_9STRA1.110e-1055.07Hypothetical protein n=1 Tax=Florenciella parvula ... [more]
A0A7S0BKC5_9RHOD5.030e-1046.27Hypothetical protein n=2 Tax=Rhodosorus marinus Ta... [more]
M1VLL8_CYAM19.610e-1044.74Uncharacterized protein n=1 Tax=Cyanidioschyzon me... [more]
M2XU10_GALSU1.260e-952.31Uncharacterized protein n=2 Tax=Galdieria sulphura... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Contig_9contigContig_9:182233..184501 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Tribonema minus UTEX_B_31562021-06-17
Properties
Property NameValue
ProteomeIdTrimin1|347184|estExt_Genemark1.C_Ctg_90027
Max annot lvl2759|Eukaryota
EggNOG OGs2E3K4@1|root,2SY8W@2759|Eukaryota
Evalue9.31e-26
Seed ortholog2880.D8LJZ9
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionconserved unknown protein
Ec32 orthologEc-06_007620.1
TranscriptId347506
TrackFilteredModels1
ProteinId347184
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|347184gene_3521Tribonema minus UTEX_B_3156 geneContig_9 182233..184501 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|347184Trimin1|347184|estExt_Genemark1.C_Ctg_90027Tribonema minus UTEX_B_3156 polypeptideContig_9 182352..184413 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
exon_3521_1exon_3521_1Tribonema minus UTEX_B_3156 exonContig_9 182233..182541 +
exon_3521_2exon_3521_2Tribonema minus UTEX_B_3156 exonContig_9 183460..183551 +
exon_3521_3exon_3521_3Tribonema minus UTEX_B_3156 exonContig_9 184291..184501 +


The following five_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
UTR5_3521UTR5_3521Tribonema minus UTEX_B_3156 five_prime_UTRContig_9 182233..182351 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
CDS_3521CDS_3521Tribonema minus UTEX_B_3156 CDSContig_9 182352..182541 +


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
UTR3_3521UTR3_3521Tribonema minus UTEX_B_3156 three_prime_UTRContig_9 184414..184501 +


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>mRNA_3521 ID=mRNA_3521|Name=jgi.p|Trimin1|347184|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=612bp|location=Sequence derived from alignment at Contig_9:182233..184501+ (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon.  
GTTTTTTACTGGTGCTGCTGGTGTGCGCCTTTGCGGCGCCATGCCTGGGC
TTCGTGGGTGGTGCTAGAACACTCATAGCGCAGCAGCAGCGGCAACTCTG
CAGATCATGCGCATCAGGCATGACACACAATCGGAGGCCGTCGCTGTTGA
GGGCGGAGTCAGGGGATGAAGACGCTGCCGCTGCTTCTCAGCCAGTGTCC
GTGGCTGAGGAAAAGAAGGAGGAGACGAAACAGGAGGTGGTGCCCATGGA
CATGAGCTTGCCCACTATAAACCTGGACGCCAAGGATCAGGACAAATCCT
ACCCCATCGATTTTCCGGCCTATGGTCTCTTGAGTCTCTCAACGGTGGTG
GCGATAGCCTTTGTGGGGAGCATATTTGAAGTTGCGGGGCCCAGCCCGCT
GCTGGGCTACGTGCCCACGTACATCATTGGAGCGCTGTCTCTGCCTGGTT
TCATCTTCCTGTTCTATGCGGCAATCAAGAAGGGGCAGGCTGAGGCCGAA
GAGGACGACGACGACTTCTACTAGGTCTTCTTTTGCACTAGATTTACAGG
TGGCCATGATTATTACAGTGCCTGACATCACATTTCTACATGCTTCCAAA
TGTACTGACATG
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protein sequence of jgi.p|Trimin1|347184

>Trimin1|347184|estExt_Genemark1.C_Ctg_90027 ID=Trimin1|347184|estExt_Genemark1.C_Ctg_90027|Name=jgi.p|Trimin1|347184|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=135bp
MTHNRRPSLLRAESGDEDAAAASQPVSVAEEKKEETKQEVVPMDMSLPTI
NLDAKDQDKSYPIDFPAYGLLSLSTVVAIAFVGSIFEVAGPSPLLGYVPT
YIIGALSLPGFIFLFYAAIKKGQAEAEEDDDDFY*
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mRNA from alignment at Contig_9:182233..184501+

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_3521 ID=mRNA_3521|Name=jgi.p|Trimin1|347184|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=2269bp|location=Sequence derived from alignment at Contig_9:182233..184501+ (Tribonema minus UTEX_B_3156 )
GTTTTTTACTGGTGCTGCTGGTGTGCGCCTTTGCGGCGCCATGCCTGGGC
TTCGTGGGTGGTGCTAGAACACTCATAGCGCAGCAGCAGCGGCAACTCTG
CAGATCATGCGCATCAGGCATGACACACAATCGGAGGCCGTCGCTGTTGA
GGGCGGAGTCAGGGGATGAAGACGCTGCCGCTGCTTCTCAGCCAGTGTCC
GTGGCTGAGGAAAAGAAGGAGGAGACGAAACAGGAGGTGGTGCCCATGGA
CATGAGCTTGCCCACTATAAACCTGGACGCCAAGGATCAGGACAAATCCT
ACCCCATCGGTGAGCAGCGTGCGTGTTTACTAAGCCACGAGTGGGCTGCA
CGGCAAGCTTAATCGTCTATGTGAGCGAGCACTAGTTGGCCTCACCTTAA
CACTGACGGTGCAAGTGCCAATAGTCACGCCTTGAACGCTGGAGACATTC
AACAGCCTGTACCTGTACACTCGCTGCCCCCCAGTCTTTTGGCAGAACTC
TTGAAGTGGGCTAGGGGACAGTTGCGGAGGAGGCCCTATCTGAGCTTTAC
CCGTAGATAGCGTCATGATAGTAGTGGGTGTTTGTGTGTGCTCCCAGAGC
AGGGCTGCACAAGCTCGAAGGAGCATACGCATTGTATACGACGTGATGGA
GAATAGGGTTTACGCCCCTCAAGCGGAAGTAATACAGTACACTGGTAAGG
GTACCCCTGCATTGAAGCAAGTACCAACGGCCTCCTTCAGTTTTGGCAGA
GGACGCTTCGCACAGTTGCATGTAAAGAACTTGAAAAAATATGCAACTGC
AACCATATTGGTGCACTGTAGAGCATTGTCCACTAGTGCAAGGTTTGTGC
TGTGCTTGCCACGACAGCACCAAACGCTCAACCTAGGATTTGGATGGTCT
AACGACTCACCTGGGACTCATGGGTACTCAACTCAACACTGCCAAACCTC
CTGCTGCACCATGCTGCGAGCCTAGACAGGGGTTGCATTCTCGCTGCAGT
CAGCATCATAAATTCTTTCAGCAAAAGCATATTGCCGTGCGCTGGTGATT
TTGAACACTGCTGATATGCAGCGCTCGATCAATCAACACGCTGGTGAGTG
TCACACTTCAAGTTGAAGTACTTTGTGTTGCATGCTGGTAGACCTGAGCT
CAGAGGTTCGCCATTCAAGTTTCCTGCTTTCATGTTCTCAACCTCCATTG
TATGCGGTGATTGTTCATTCTTCCCAGATTTTCCGGCCTATGGTCTCTTG
AGTCTCTCAACGGTGGTGGCGATAGCCTTTGTGGGGAGCATATTTGAAGT
TGCGGGGCCCAGCCCGCTGGTGAGTGCGCTGATCTTTTACGATCTTCCAG
TGCATGTGCACCTACAATAATGGTATAGATGTGCCCCAATGTATGTGCAC
GGCACAAATAGTGCACTCTGGCGTCTTGCAGAATGTTAACAATGATGCGT
ACTTGCATCTACAAACGCTGCTGCAACGCCATCGATTGGGAAACCAATTA
TTTCATGCCCTGCGCAAGGATGGCAGTGTGTGTTATGCAGGCGGGTAGAG
GGGGTAATGTCCATGAAAATGGGACATCGCCTCACTCTATTCGAGCAGGC
ATTTTCTGGTACATTGTTGAAATCCTTGGCATGCGCGGTTACTGACTGCT
GGTATGCTGCGCGTAGTGACTGACGTCTGCATATGTACAACAGGCCTGCA
AAGCTGAGCCAGAGCGACCTCCCCCTGCAGTCCGAGCATCATCACCCTTG
CGAATCAGTGAACTTCACACATTTTGGTGTGTACTAGTAATGCACAATAC
GCTCATGAATCAACGACTTCCACACACTTCTGGGCGTAACAACGCGTGAC
CTTGTGTGTTGTGATGCACAATGCGCTCATGCATCAATGACTTACACACA
CTGCTGGGCGTAACAACGCGTGTCCTTGCTGCCTGTACAACACCTCTTTC
ACCTGCACAAAAATGTGTGATACTGCACAATGCGCTCATGAAACAACGCC
TTGCACACCCTGCATTGACGTGCTCGTGCTGCCTGTGCAACGCCTTTTTC
ATTTGCAGCTGGGCTACGTGCCCACGTACATCATTGGAGCGCTGTCTCTG
CCTGGTTTCATCTTCCTGTTCTATGCGGCAATCAAGAAGGGGCAGGCTGA
GGCCGAAGAGGACGACGACGACTTCTACTAGGTCTTCTTTTGCACTAGAT
TTACAGGTGGCCATGATTATTACAGTGCCTGACATCACATTTCTACATGC
TTCCAAATGTACTGACATG
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Coding sequence (CDS) from alignment at Contig_9:182233..184501+

>mRNA_3521 ID=mRNA_3521|Name=jgi.p|Trimin1|347184|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=405bp|location=Sequence derived from alignment at Contig_9:182233..184501+ (Tribonema minus UTEX_B_3156 )
ATGACACACAATCGGAGGCCGTCGCTGTTGAGGGCGGAGTCAGGGGATGA
AGACGCTGCCGCTGCTTCTCAGCCAGTGTCCGTGGCTGAGGAAAAGAAGG
AGGAGACGAAACAGGAGGTGGTGCCCATGGACATGAGCTTGCCCACTATA
AACCTGGACGCCAAGGATCAGGACAAATCCTACCCCATCGATTTTCCGGC
CTATGGTCTCTTGAGTCTCTCAACGGTGGTGGCGATAGCCTTTGTGGGGA
GCATATTTGAAGTTGCGGGGCCCAGCCCGCTGCTGGGCTACGTGCCCACG
TACATCATTGGAGCGCTGTCTCTGCCTGGTTTCATCTTCCTGTTCTATGC
GGCAATCAAGAAGGGGCAGGCTGAGGCCGAAGAGGACGACGACGACTTCT
ACTAG
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