mRNA_3520 (mRNA) Tribonema minus UTEX_B_3156

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
Namejgi.p|Trimin1|347183
Unique NamemRNA_3520
TypemRNA
OrganismTribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Homology
BLAST of jgi.p|Trimin1|347183 vs. uniprot
Match: A0A835YI41_9STRA (Pseudouridine synthase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YI41_9STRA)

HSP 1 Score: 727 bits (1877), Expect = 4.470e-261
Identity = 480/480 (100.00%), Postives = 480/480 (100.00%), Query Frame = 1
Query:    1 MAATGERITVEQEDGNAPIDWLLSRKLPHRSRRFFRKQLADGNVQIDGRVNKRLVRVRPGQTITVAAAAADAVAPPSEQLPAQDLKLHVVYEDEHIIVVAKPPGIVVQPMASQPRGTLLNGVLHHMVARGECAAGDEVAAQGLLQGVVHRLDRDTSGIVIVAKNLEASSTLSAMFKSRKVSKTYLAVTAGLPNPARCALEPADSGGDGTGPYTIDAPLYKRASGKMAVATPQQLQXXXXXXXXASAIDVKPALTRVKALPRSAAXXXXXXXXXXXGGLRALQVEITTGRQHQIRAHLLHAGAPVIGDVTYCAGGDAGAARAAAAALGVARPLLHALSLTLHHPVTNARLVLVAPLPADMWRVLSDVVGPDAARKLPQLPADADGAXXXXXXXXXXGAAAGVRAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRVKDAAAALNLAKLAQNAIGPPSDK 1440
            MAATGERITVEQEDGNAPIDWLLSRKLPHRSRRFFRKQLADGNVQIDGRVNKRLVRVRPGQTITVAAAAADAVAPPSEQLPAQDLKLHVVYEDEHIIVVAKPPGIVVQPMASQPRGTLLNGVLHHMVARGECAAGDEVAAQGLLQGVVHRLDRDTSGIVIVAKNLEASSTLSAMFKSRKVSKTYLAVTAGLPNPARCALEPADSGGDGTGPYTIDAPLYKRASGKMAVATPQQLQXXXXXXXXASAIDVKPALTRVKALPRSAAXXXXXXXXXXXGGLRALQVEITTGRQHQIRAHLLHAGAPVIGDVTYCAGGDAGAARAAAAALGVARPLLHALSLTLHHPVTNARLVLVAPLPADMWRVLSDVVGPDAARKLPQLPADADGAXXXXXXXXXXGAAAGVRAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRVKDAAAALNLAKLAQNAIGPPSDK
Sbjct:    1 MAATGERITVEQEDGNAPIDWLLSRKLPHRSRRFFRKQLADGNVQIDGRVNKRLVRVRPGQTITVAAAAADAVAPPSEQLPAQDLKLHVVYEDEHIIVVAKPPGIVVQPMASQPRGTLLNGVLHHMVARGECAAGDEVAAQGLLQGVVHRLDRDTSGIVIVAKNLEASSTLSAMFKSRKVSKTYLAVTAGLPNPARCALEPADSGGDGTGPYTIDAPLYKRASGKMAVATPQQLQXXXXXXXXASAIDVKPALTRVKALPRSAAXXXXXXXXXXXGGLRALQVEITTGRQHQIRAHLLHAGAPVIGDVTYCAGGDAGAARAAAAALGVARPLLHALSLTLHHPVTNARLVLVAPLPADMWRVLSDVVGPDAARKLPQLPADADGAXXXXXXXXXXGAAAGVRAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRVKDAAAALNLAKLAQNAIGPPSDK 480          
BLAST of jgi.p|Trimin1|347183 vs. uniprot
Match: A0A6H5K089_9PHAE (S4 domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5K089_9PHAE)

HSP 1 Score: 221 bits (563), Expect = 4.030e-62
Identity = 148/382 (38.74%), Postives = 201/382 (52.62%), Query Frame = 1
Query:   28 VEQEDGNAPIDWLLSRKLPHRSRRFFRKQLADGNVQIDGRVNKRLVRVRPGQTITVAAAAADAVAPP-----------------SEQLPAQDLKLHVVYEDEHIIVVAKPPGIVVQPMASQPRGTLLNGVLHHMVARGECAAGDEV---AAQGLLQGVVHRLDRDTSGIVIVAKNLEASSTLSAMFKSRKVSKTYLAVTAGLPNPARCALEPADSGGDGTGPYTIDAPLYKRASGKMAVATPQQLQXXXXXXXXASAIDVKPALTRVKALPRSAAXXXXXXXXXXXGGLRALQVEITTGRQHQIRAHLLHAGAPVIGDVTYCAGGDAGA----ARAAAAALGVARPLLHALSLTLHHPVTNARLVLVAPLPADMWRVLSDVV 1101
            V  ED  APIDW+LSR+LP  SRRF+RK L  G+V++DGR  KR +RV+ G  I+V                            S   P +  +L VV+ED+H+ VV KP G++ QP A+ PRGT+L+G+++HMV  G+   G +    AA  L QG+V RLD+ TSGI++VAK L ASS LSA+F+  KV K YLAV  G            D G D      +DAPLY+R+SGK+    P +          A     K A TRV+ +  +              GL   + +I TGR HQ+R HL   G P++GD  Y   GD  A    ++ +A    V RPLLH++SL   HP TN  +   AP+P DMW    +++
Sbjct:  137 VSDEDNKAPIDWVLSRRLPQHSRRFYRKALEAGDVKVDGRKVKRFIRVKRGARISVDLGRQXXXXXXXXXXXXXXXXXXXXXXXSLVFPQRLPRLRVVFEDDHLFVVMKPAGMICQPCAAAPRGTVLHGLMYHMVQSGQLKEGADTMAAAANTLSQGIVQRLDKQTSGIMVVAKTLAASSKLSALFRKGKVKKQYLAVCHG------------DPGFDSV----VDAPLYRRSSGKVGAVEPWE----------AEEFRAKEAQTRVRNVATAR-------------GLSLCRADILTGRMHQVRVHLKWIGCPIVGDREY---GDPEANFRVSKRSAHRAEVQRPLLHSVSLEFIHPFTNKPMSFKAPMPPDMWETAQNIL 476          
BLAST of jgi.p|Trimin1|347183 vs. uniprot
Match: A0A7S3XRN0_HETAK (Pseudouridine synthase n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3XRN0_HETAK)

HSP 1 Score: 203 bits (516), Expect = 5.530e-57
Identity = 129/358 (36.03%), Postives = 194/358 (54.19%), Query Frame = 1
Query:   28 VEQEDGNAPIDWLLSRKLPHRSRRFFRKQLADGNVQIDGRVNKRLVRVRPGQTITVAAAAADAVAPPSEQLPAQDLKLHVVYEDEHIIVVAKPPGIVVQPMASQPRGTLLNGVLHHMVARGECAAGDEVAAQGLLQGVVHRLDRDTSGIVIVAKNLEASSTLSAMFKSRKVSKTYLAVTAGLPNPARCALEPADSGGDGTGPYTIDAPLYKRASGKMAVATPQQLQXXXXXXXXASAIDVKPALTRVKALPRSAAXXXXXXXXXXXGGLRALQVEITTGRQHQIRAHLLHAGAPVIGDVTYCAGGDAGAARAAAAALGVARPLLHALSLTLHHPVTNARLVLVAPLPADMWRVLSDVV 1101
            V+ E+  AP+DW L+   P +SRR+FRK++ DG V+++G+  +R  ++R GQ + +     +      E   A++L L V++ED+ ++ V KP G+V  P+ SQ  GT+LNG+LHH +   +    + +  + L +G+VHRLD+DTSG++I AKN +A+  LS  F+SR+  K YL V  G   P                   ++ P+Y+  +GKMAV + +Q           S   VK + + VK L                 GL  ++VE+ TGR HQ R HL + GAP++GD  Y   G A   + A   LGV R LLHA  L + HP T  +L L AP+P+DMW V+ D +
Sbjct:   62 VDSENNGAPLDWYLAHSFPQKSRRYFRKKIQDGEVKVNGKTVRRFAKLRTGQVLDL-----EIEDFAKEIEGAENLSLSVLFEDDDLVAVLKPAGVVCYPVDSQKSGTVLNGLLHHFLETEQQVFANSI--ETLSKGIVHRLDKDTSGVMIFAKNQKAAKKLSQSFESRETVKRYLGVCYGHVEPKT----------------VVEEPVYRTKNGKMAVLSKKQ------DTSVISESRVKDSKSVVKCLMHRQ-------------GLSLVEVELITGRMHQARLHLKYLGAPILGDPIY---GLARVNKDAYQDLGVDRALLHASRLIVQHPRTGEKLDLSAPVPSDMWGVIEDCI 374          
BLAST of jgi.p|Trimin1|347183 vs. uniprot
Match: A0A7S2USK5_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2USK5_9STRA)

HSP 1 Score: 177 bits (449), Expect = 1.010e-46
Identity = 143/423 (33.81%), Postives = 197/423 (46.57%), Query Frame = 1
Query:   16 ERITVEQEDGNAPIDWLLSRKLPHRSRRFFRKQLADGNVQIDGRVNKRLVRVRPGQTITVAAAAADAVAPPSEQ--LPAQDLKLHVVYEDEHIIVVAKPPGIVVQPMASQPRGTLLNGVLHHMVARGECAAGDEVAAQ---------------------------------------------GLLQGVVHRLDRDTSGIVIVAKNLEASSTLSAMFKSRKVSKTYLAVTAGLPNPARCALEPADSGGDGTGPYTIDAPLYKRASGKMAV---ATPQ---------QLQXXXXXXXXASAIDVKPALTRVKALPRSAAXXXXXXXXXXXGGLRALQVEITTGRQHQIRAHLLH-AGAPVIGDVTYCAGGDAGAARAAAAA--LGVARPLLHALSLTLHHPVTNARLVLVAPLPADMWRVLSDV 1098
            +   V ++D + P+D +L+R+ P +SRRFFRK +  G V++D +  KRL ++R GQ ++       A   P E+  +  +DL L V++EDEH+I VAKPPG++V P+ S   GT+L+GVLH +    E     E AAQ                                             GL QGVVHRLD DTSG+V+VAKN  A+  ++  F+ R V K Y+AV  G   P               G + +  PL + +SGKMAV   A P+          L         A A   + A T V+ L                G L  +  EI TGR HQ+R HL   A  PV+GD  Y   GD    R A  +  L V+R LLHA SL   HP+T   + L  P+P DM R++  +
Sbjct:   53 QTFVVGKKDDDWPLDIVLTRQYPEKSRRFFRKIIQAGRVKVDEKEVKRLSKIRKGQLVS-------AQFKPDEKPSMEPEDLGLEVLFEDEHLIAVAKPPGMIVHPVESCETGTVLHGVLHLLTTPREKVTPKETAAQPEGNQENAQEEDTKVERKPEKNAKKGGPDPWDPAKPLKLTARLCTGLAQGVVHRLDSDTSGVVLVAKNAPAARGMAKQFQQRSVKKKYMAVVVGDLGP---------------GVHHLTLPLLRTSSGKMAVFQEAQPEWGEEMAGGDMLTGDFTDVGEADAKGARGATTIVRRLATD-------------GQLSVVGAEILTGRMHQLRVHLAQEANCPVLGDPVY---GDTDWNRRAKRSENLQVSRTLLHAHSLEFTHPITGKHVSLSTPVPLDMKRIVQRI 437          
BLAST of jgi.p|Trimin1|347183 vs. uniprot
Match: A0A7S3XXK7_HETAK (Pseudouridine synthase n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3XXK7_HETAK)

HSP 1 Score: 176 bits (446), Expect = 1.290e-46
Identity = 130/364 (35.71%), Postives = 178/364 (48.90%), Query Frame = 1
Query:   16 ERITVEQEDGNAPIDWLLSRKLPHRSRRFFRKQLADGNVQIDGRVNKRLVRVRPGQTITVAAAAADAVAPPSEQLPAQDLKLHVVYEDEHIIVVAKPPGIVVQPMASQPRGTLLNGVLHHMVARGECAAGDEVAAQG---LLQGVVHRLDRDTSGIVIVAKNLEASSTLSAMFKSRKVSKTYLAVTAGLPNPARCALEPADSGGDGTGPYTIDAPLYKRASGKMAVATPQQLQXXXXXXXXASAIDVKPALTRVKALPRSAAXXXXXXXXXXXGGLRALQVEITTGRQHQIRAHLLHAGAPVIGDVTYCAGGDAGAARAAAAALGVARPLLHALSLTLHHPVTNARLVLVAPLPADMWRVLSDV 1098
            E + V +E     +D  LS + P +SR +F      G V++ GR  K+  ++R GQ ++VA      +A   E +P     L ++YEDEH+I VAKPPG+VV P      GT  N +  HM +RGE    D  AA G   L  G+VHRLD+ TSG+++ +KN +  + LS MF SRK+ KTYLAV  G P            G D      I+  + +    +  +    + Q          A   + A+T V  L   +              L   +V+I TGR HQIR HL H   PV+GD  Y   G+    R A    G+ RPLLHA  L L HP+T   L L AP+P DM RVL+ +
Sbjct:   67 ETVIVGEEYNKKRLDAFLSDEFPEQSRSYFGSLCQQGLVRVGGRAVKKSEKLRAGQEVSVAFLPTAEMAAEPEDIP-----LDILYEDEHLIAVAKPPGMVVHPAPGSWSGTFANALAFHMRSRGE----DYRAAGGGDALRPGIVHRLDKGTSGVLLASKNSQCHAKLSEMFASRKIKKTYLAVCVGNP------------GQD----VKIENLIARHPKNRQKMCVIHETQE--------GAARARTAVTLVDGLSFDSQ-------------LSLARVQIETGRTHQIRVHLAHRRTPVLGDELY---GNGDQNRRAVKRFGLQRPLLHAYQLELDHPITGEPLSLKAPVPEDMVRVLAKI 381          
BLAST of jgi.p|Trimin1|347183 vs. uniprot
Match: A0A7C2DKQ2_9FIRM (Pseudouridine synthase n=1 Tax=Firmicutes bacterium TaxID=1879010 RepID=A0A7C2DKQ2_9FIRM)

HSP 1 Score: 164 bits (414), Expect = 6.890e-43
Identity = 131/383 (34.20%), Postives = 173/383 (45.17%), Query Frame = 1
Query:   13 GERITVEQEDGNAPIDWLLSRKLPHRSRRFFRKQLADGNVQIDGRVNKRLVRVRPGQTITVAAAAADAVAPPSEQLPAQDLKLHVVYEDEHIIVVAKPPGIVVQPMASQPRGTLLNGVLHHMVARGECAAGDEVAAQGLLQGVVHRLDRDTSGIVIVAKNLEASSTLSAMFKSRKVSKTYLAVTAGLPNPARCALEPADSGGDGTGPYTIDAPLYK--RASGKMAVATPQQLQXXXXXXXXASAIDVKPALTRVKALPRSAAXXXXXXXXXXXGGLRALQVEITTGRQHQIRAHLLHAGAPVIGDVTYCAGGDAGAARAAAAALGVARPLLHALSLTLHHPVTNARLVLVAPLPADMWRVLSDVVGPDAARKLPQLPADADGA 1155
            G R+ V+       +D  L+ +LP  SR      + +G V++DG V K   RVR GQ +TV    A    PP+  L  + L L VVYED  ++VV KPPG+ V P    PRGTL N +L  +    E AA D         G+VHRLD+DTSG+++VAK  EA   L    ++R + +TYL +  G P PA                 TIDAP+ +  R   +MAV                     + A+TR +   R A             G   ++  + TGR HQ+R H  H G PV+GD  Y   G A          G+ R  LHA  L L HP T   L L APLP D+ R L  +    AA     +P    GA
Sbjct:    4 GHRLVVDAAADGTRLDRFLAGRLPGLSRSRLHALIEEGRVRVDGTVRKPSARVRAGQVVTVELPPA----PPAPALVPEPLPLDVVYEDGDLLVVNKPPGLAVHPGPGHPRGTLANALLARVP---ELAALDPERP-----GIVHRLDKDTSGLLVVAKTPEALRALQGQVRARTMRRTYLVLVHGQPPPAG----------------TIDAPIARDPRHRRRMAVVP-----------------SGRAAVTRYRVRERFA-------------GAALVEATLLTGRTHQLRVHFKHLGHPVVGDPVYGRRGPA---------WGMTRQALHAWRLRLRHPRTGTALALEAPLPDDLARALETLRRAQAAAGTVGVPGARGGA 319          
BLAST of jgi.p|Trimin1|347183 vs. uniprot
Match: A0A2G6CT70_9PROT (Pseudouridine synthase n=1 Tax=Proteobacteria bacterium TaxID=1977087 RepID=A0A2G6CT70_9PROT)

HSP 1 Score: 161 bits (407), Expect = 7.600e-42
Identity = 121/371 (32.61%), Postives = 180/371 (48.52%), Query Frame = 1
Query:   22 ITVEQEDGNAPIDWLLSRKLPHRSRRFFRKQLADGNVQIDGRVNKRLVRVRPGQTITVAAAAADAVAPPSEQLP---AQDLKLHVVYEDEHIIVVAKPPGIVVQPMASQPRGTLLNGVLHHMVARGECAAGDEVAAQGLLQ-GVVHRLDRDTSGIVIVAKNLEASSTLSAMFKSRKVSKTYLAVTAGLPNPARCALEPADSGGDGTGPYTIDAPLYKRASGKMAVATPQQLQXXXXXXXXASAIDVKPALTRVKALPRSAAXXXXXXXXXXXGGLRALQVEITTGRQHQIRAHLLHAGAPVIGDVTYCAGGDAGAARAAAAALG--------VARPLLHALSLTLHHPVTNARLVLVAPLPADMWRVLSDV 1098
            I V+ +   A +D +++  + + SR F    +  GN+Q+DG   K   RV+ GQ ++ A         PS  +P   AQ+L L ++YED  II + KPPG+VV P    P GTL+N +LHH          D     G L+ G+VHRLD++TSG+++ AKN  +  +LS  FKSR V K YLA+  GL          +DSG       +I+ P+ +  + +  ++   +                +PALTR +   R               G   L ++I TGR HQIR H    G PV+GD  Y    + GAA+  A   G        + R +LHA  L ++HPV+N  + + APLP DM  ++  +
Sbjct:   10 IHVDPQQAGARLDAMVADSIDNCSRSFATTLIQRGNIQVDGVCRKPAYRVKAGQKVSGAI--------PSPDIPVYQAQNLALDILYEDTDIIFINKPPGMVVHPAPGHPSGTLVNALLHH--------CPDLAGISGTLRPGIVHRLDKNTSGVMVAAKNSRSMHSLSDQFKSRTVRKRYLALVYGLLK--------SDSG-------SIERPIGRHPTNRKRMSVVSRSS--------------RPALTRWQVRERFK-------------GTTLLDLDIRTGRTHQIRVHCQAIGHPVVGDPVYA---NRGAAKQLAVNHGPIAQRVSKLQRQMLHAWKLKINHPVSNRSMTIEAPLPDDMTTIIDQI 319          
BLAST of jgi.p|Trimin1|347183 vs. uniprot
Match: A0A0K9IGL2_9DELT (Pseudouridine synthase n=1 Tax=Desulfocarbo indianensis TaxID=1348163 RepID=A0A0K9IGL2_9DELT)

HSP 1 Score: 160 bits (404), Expect = 1.820e-41
Identity = 140/363 (38.57%), Postives = 173/363 (47.66%), Query Frame = 1
Query:    7 ATGERITVEQEDGNAPIDWLLSRKLPHRSRRFFRKQLADGNVQIDGRVNKRLVRVRPGQTITVAAAAADAVAPPSEQLPAQDLKLHVVYEDEHIIVVAKPPGIVVQPMASQPRGTLLNGVLHHMVARGECAAGDEVAAQGLLQGVVHRLDRDTSGIVIVAKNLEASSTLSAMFKSRKVSKTYLAVTAGLPNPARCALEPADSGGDGTGPYTIDAPLYKRASGKMAVATPQQLQXXXXXXXXASAIDVKPALTRVKALPRSAAXXXXXXXXXXXGGLRALQVEITTGRQHQIRAHLLHAGAPVIGDVTYCAGGDAGAARAAAA-ALGVA-RPLLHALSLTLHHPVTNARLVLVAPLPADMWRVL 1089
            A G R+ V  ++       LL  K    SR   ++ L  G++ +DG   +  V+VR GQ I V     +    PSE +P Q + L V+YEDEH++VV KPPG+VV P     RGTL++G+LHH      C  G       L  G+VHRLD+DTSG ++ AK+ +A   L A F + KVSK YLA+  G P         ADSG    G + +D    KR S +                        KPA T      R  A            GL  L+V I TGR HQIR HL  AG PV  D TY       AA  A A AL  A R +LHAL L   HPV   RL L APLPAD   VL
Sbjct:   12 AEGRRLDVVAQE-------LLGEKF---SRSQVQRLLRQGHITLDGGPARAAVKVRAGQAIAVELPEPE----PSELIP-QAMDLAVLYEDEHLVVVNKPPGLVVHPAPGHGRGTLVHGLLHH------CRNGLSGVGGKLRPGIVHRLDKDTSGALVAAKSDQAHRALVAAFAAGKVSKVYLALVWGAPP----LTGNADSG---IGRHPVDR---KRMSSQGR--------------------HTKPARTSWVVTRRFRA------------GLSLLRVSIHTGRTHQIRVHLSEAGFPVAADATYGGRRQKRAAPPAVADALRTAGRQMLHALELGFEHPVRGGRLRLTAPLPADFRAVL 311          
BLAST of jgi.p|Trimin1|347183 vs. uniprot
Match: A0A651GCR3_9ACTN (Pseudouridine synthase n=2 Tax=Nitriliruptor sp. TaxID=2448056 RepID=A0A651GCR3_9ACTN)

HSP 1 Score: 160 bits (404), Expect = 1.860e-41
Identity = 130/369 (35.23%), Postives = 184/369 (49.86%), Query Frame = 1
Query:   22 ITVEQEDGNAPIDWLLSRKLPHRSRRFFRKQLADGNVQIDGRVNKRLVRVRPGQTITVAAAAADAVAPPSEQLPAQDLKLHVVYEDEHIIVVAKPPGIVVQPMASQPRGTLLNGVLHHMVARGECAAGDEVAAQGLLQGVVHRLDRDTSGIVIVAKNLEASSTLSAMFKSRKVSKTYLAVTAGLPNPARCALEPADSGGDGTGPYTIDAPLYKRASGKMAVATPQQLQXXXXXXXXASAIDVKPALTRVKALPRSAAXXXXXXXXXXXGGLRALQVEITTGRQHQIRAHLLHAGAPVIGDVTYCAGGDAGAARAAAAALGVARPLLHALSLTLHHPVTNARLVLVAPLPADMWRVLSDV-VGPDAARKL 1125
            +TV  ED    +D  L+ +L   SR     ++  G+V +D  V  R  RVR G+ I + AAA     P SE  P   ++    Y DEH++VVAKP G+VV P A  P GTL++ +     A    A GDE +  G    +VHRLDRDTSG++++A + EA + L+A   +R+V++ Y A+  G+P   R                 IDAP+ +    ++  A                  D +PALTR + L    A           G + +L  ++ TGR HQ+R HL   G P++GD TY      G +R  + ALG  RP+LHA +L + HPVT ARL L  PLPA++  VL    + P A R L
Sbjct:    4 LTVPPEDDGQRLDVWLAGQLGI-SRNQAAHRIDAGDVTVDEVVASRRRRVRAGERILLHAAA---TVPASEPPPLPPVR----YRDEHLLVVAKPAGLVVHPGAGHPDGTLVDAL---RAAGIPLAPGDEPSRPG----IVHRLDRDTSGLLLIASSPEAHAGLTAALAAREVARRYHALVVGVPTHPR---------------GRIDAPIGRDPGDRVRFAV---------------VADGRPALTRYRTL----AVGRADELPEHRGAVASLACQLGTGRTHQLRVHLTALGHPIVGDPTY------GPSRELSRALGARRPVLHAAALGVDHPVTGARLELYEPLPAELRAVLQRAGLTPPAQRDL 317          
BLAST of jgi.p|Trimin1|347183 vs. uniprot
Match: F0Y7E2_AURAN (Pseudouridine synthase n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0Y7E2_AURAN)

HSP 1 Score: 160 bits (405), Expect = 3.480e-41
Identity = 126/357 (35.29%), Postives = 168/357 (47.06%), Query Frame = 1
Query:   49 APIDWLLSRKLPHRSRRFFRKQLADGNVQIDGRV-NKRLVRVRPGQTITVAAAAADAVAPPSEQLPAQDLKLHVVYEDEHIIVVAKPPGIVVQPMASQPRGTLLNGVLHHMVARGECAAGDEVAAQGLLQGVVHRLDRDTSGIVIVAKNLEASSTLSAMFKSRKVSKTYLAVTAGLPNPARCALEPADSGGDGTGPYTIDAPLYKRASG--KMAVATPQQLQXXXXXXXXASAIDVKPALTRVKALPRSAAXXXXXXXXXXXGGLRALQVEITTGRQHQIRAHLLHAGAPVIGDVTYCAGGDAGAARAAAAALGVARPLLHALSLTLHHPVTNARLVLVAPLPADMWRVLSDVVGPD 1110
            A +D  L+ + P R+RR + + +  G V+++G V  ++   V  G  +   A AA+      + + A+DL L V+ +D   +VV K  G+V  P     RGTL N V H       C  G   A      G+VHRLDR TSG ++VA+N  A+  L A FK+R V+K YLAV A           P     DG     IDAP+ +  +   KMAV                     +PA++RV+ L                G     QV I TGR HQIR HL H G+PV+GD  Y   GDA A   AAAA    R LLHA  L   HP + AR+ + AP P D+ R  + V G D
Sbjct:   55 ARLDAFLAAQFPERTRREWAEAIGGGAVRVNGAVATRKSASVAAGDGVAADAFAAEPAG--DKPVEAEDLPLDVLVDDASFLVVNKAAGMVTHPAPGARRGTLANAVAHR------CGGGGVFAEATPRPGIVHRLDRYTSGAIVVARNARATRRLQAQFKARTVAKLYLAVLA----------RPXXXXXDGADELVIDAPIGRHPARREKMAVVP-----------------GGRPAVSRVRVLASD-------------GRRCVAQVAIDTGRTHQIRVHLAHVGSPVLGDPVY---GDAQANARAAAAFAANRTLLHAWRLAFDHPDSGARVEVTAPPPPDLARATAVVAGRD 360          
The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|347183 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A835YI41_9STRA4.470e-261100.00Pseudouridine synthase n=1 Tax=Tribonema minus Tax... [more]
A0A6H5K089_9PHAE4.030e-6238.74S4 domain-containing protein n=2 Tax=Ectocarpus Ta... [more]
A0A7S3XRN0_HETAK5.530e-5736.03Pseudouridine synthase n=1 Tax=Heterosigma akashiw... [more]
A0A7S2USK5_9STRA1.010e-4633.81Hypothetical protein n=1 Tax=Fibrocapsa japonica T... [more]
A0A7S3XXK7_HETAK1.290e-4635.71Pseudouridine synthase n=1 Tax=Heterosigma akashiw... [more]
A0A7C2DKQ2_9FIRM6.890e-4334.20Pseudouridine synthase n=1 Tax=Firmicutes bacteriu... [more]
A0A2G6CT70_9PROT7.600e-4232.61Pseudouridine synthase n=1 Tax=Proteobacteria bact... [more]
A0A0K9IGL2_9DELT1.820e-4138.57Pseudouridine synthase n=1 Tax=Desulfocarbo indian... [more]
A0A651GCR3_9ACTN1.860e-4135.23Pseudouridine synthase n=2 Tax=Nitriliruptor sp. T... [more]
F0Y7E2_AURAN3.480e-4135.29Pseudouridine synthase n=1 Tax=Aureococcus anophag... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Contig_9contigContig_9:178492..181812 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Tribonema minus UTEX_B_31562021-06-17
Properties
Property NameValue
ProteomeIdTrimin1|347183|estExt_Genemark1.C_Ctg_90026
BRITEko00000,ko01000,ko03009
KEGG koko:K06180
EC5.4.99.23
Descriptionpseudouridine synthase activity
COG categoryJ
Max annot lvl2759|Eukaryota
EggNOG OGsCOG0564@1|root,KOG1919@2759|Eukaryota
Evalue4.09e-64
Seed ortholog2880.D7FUY3
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionpseudouridine synthase
Ec32 orthologEc-01_008640.1
TranscriptId347505
TrackFilteredModels1
ProteinId347183
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|347183gene_3520Tribonema minus UTEX_B_3156 geneContig_9 178492..181812 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|347183Trimin1|347183|estExt_Genemark1.C_Ctg_90026Tribonema minus UTEX_B_3156 polypeptideContig_9 178499..181812 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
exon_3520_4exon_3520_4Tribonema minus UTEX_B_3156 exonContig_9 178492..179443 -
exon_3520_3exon_3520_3Tribonema minus UTEX_B_3156 exonContig_9 180103..180442 -
exon_3520_2exon_3520_2Tribonema minus UTEX_B_3156 exonContig_9 181129..181191 -
exon_3520_1exon_3520_1Tribonema minus UTEX_B_3156 exonContig_9 181718..181812 -


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
UTR3_3520UTR3_3520Tribonema minus UTEX_B_3156 three_prime_UTRContig_9 178492..178498 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
CDS_3520CDS_3520Tribonema minus UTEX_B_3156 CDSContig_9 181718..181812 -


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>mRNA_3520 ID=mRNA_3520|Name=jgi.p|Trimin1|347183|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=1450bp|location=Sequence derived from alignment at Contig_9:178492..181812- (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon.  
ATGGCAGCTACGGGAGAGCGGATAACAGTGGAGCAGGAGGACGGCAATGC
GCCAATCGACTGGCTGCTGAGCAGGAAATTGCCGCATAGAAGCAGACGCT
TCTTTCGGAAGCAGCTCGCGGATGGGAATGTGCAAATAGACGGGAGGGTG
AACAAGAGGCTGGTGCGCGTGCGGCCCGGGCAGACCATCACGGTGGCCGC
GGCCGCCGCGGACGCCGTTGCGCCGCCCAGCGAACAGCTCCCCGCGCAAG
ATTTGAAGTTGCACGTCGTCTACGAGGATGAGCACATCATCGTGGTGGCG
AAGCCGCCGGGCATTGTGGTGCAGCCGATGGCGTCGCAGCCGCGCGGCAC
GCTGCTGAACGGCGTGCTGCACCACATGGTGGCGCGCGGGGAGTGCGCGG
CGGGGGACGAGGTGGCGGCGCAGGGGCTGCTGCAGGGGGTGGTGCACCGG
CTGGACAGGGACACGAGCGGCATTGTCATCGTGGCCAAGAACCTCGAGGC
CAGCAGCACTCTTTCGGCGATGTTCAAGTCGCGGAAAGTCAGCAAGACCT
ACCTGGCGGTCACAGCTGGCTTGCCAAACCCTGCGCGCTGCGCCCTCGAA
CCCGCTGACAGCGGCGGCGACGGCACCGGCCCTTACACCATTGACGCGCC
CCTATACAAGCGCGCCAGCGGCAAGATGGCGGTGGCAACGCCTCAGCAGC
TGCAGCAGCAGCAGCAGCAGCAACAAACCGCTTCAGCAATAGACGTAAAG
CCGGCGCTCACGCGCGTCAAGGCGCTGCCGCGCAGCGCTGCTGCCGGCGG
CGGCAGCGGCAGCAGCAGCGGCAGCGGCGGCCTCCGCGCGCTGCAGGTGG
AGATCACCACCGGGCGCCAGCACCAGATCCGCGCGCACCTGCTGCACGCG
GGCGCGCCCGTGATCGGCGACGTCACCTACTGCGCCGGCGGCGACGCCGG
CGCGGCGCGCGCGGCGGCGGCGGCGCTCGGCGTCGCGCGGCCGCTGCTGC
ACGCGCTGTCGCTCACGCTGCACCACCCCGTCACCAACGCGCGCCTCGTG
CTGGTGGCGCCGCTGCCCGCGGACATGTGGCGCGTGCTGAGCGATGTGGT
GGGGCCGGACGCTGCGCGCAAGCTGCCGCAGCTGCCCGCCGACGCGGACG
GCGCTGCTGCCGCCGCCGCTGCCGCCGCCGCTGCCGGCGCGGCCGCGGGC
GTCCGTGCCGCTGCCGCTGCCGCTGGCGGTCGTGGCGTTCGTGCCAGTGC
TGCTGCTGCTGCAGTGTCGTCGGGTGGTGCGAGGCCATCGGCCGACGGCG
CTGCTGCGTCGAAGCGGACGCGAGCGAGCGCGCCTGGCGCACTGAAGATG
GCCAAGCCCAAGGTCCGGGTGAAGGACGCTGCGGCCGCGTTGAATCTGGC
GAAGCTCGCACAGAACGCGATCGGCCCTCCGTCCGACAAATAGAGTCTGG
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protein sequence of jgi.p|Trimin1|347183

>Trimin1|347183|estExt_Genemark1.C_Ctg_90026 ID=Trimin1|347183|estExt_Genemark1.C_Ctg_90026|Name=jgi.p|Trimin1|347183|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=481bp
MAATGERITVEQEDGNAPIDWLLSRKLPHRSRRFFRKQLADGNVQIDGRV
NKRLVRVRPGQTITVAAAAADAVAPPSEQLPAQDLKLHVVYEDEHIIVVA
KPPGIVVQPMASQPRGTLLNGVLHHMVARGECAAGDEVAAQGLLQGVVHR
LDRDTSGIVIVAKNLEASSTLSAMFKSRKVSKTYLAVTAGLPNPARCALE
PADSGGDGTGPYTIDAPLYKRASGKMAVATPQQLQQQQQQQQTASAIDVK
PALTRVKALPRSAAAGGGSGSSSGSGGLRALQVEITTGRQHQIRAHLLHA
GAPVIGDVTYCAGGDAGAARAAAAALGVARPLLHALSLTLHHPVTNARLV
LVAPLPADMWRVLSDVVGPDAARKLPQLPADADGAAAAAAAAAAAGAAAG
VRAAAAAAGGRGVRASAAAAAVSSGGARPSADGAAASKRTRASAPGALKM
AKPKVRVKDAAAALNLAKLAQNAIGPPSDK*
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mRNA from alignment at Contig_9:178492..181812-

Legend: polypeptideexonCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_3520 ID=mRNA_3520|Name=jgi.p|Trimin1|347183|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=3321bp|location=Sequence derived from alignment at Contig_9:178492..181812- (Tribonema minus UTEX_B_3156 )
ATGGCAGCTACGGGAGAGCGGATAACAGTGGAGCAGGAGGACGGCAATGC GCCAATCGACTGGCTGCTGAGCAGGAAATTGCCGCATAGAAGCAGGTGCG AACGACACGAGAAAAACTATTGTGGAGCATGCAAGCCTTTTTGACCAGAG TCAGCGTTGAAGTTTGCTTACTTTGGATGGGGATTTTGTTCATAAATGTT ATTGCGTTTGAAGGTTCTGCAGTTCATCTGTCGTCGTGTCTGTCAAGAAC TCGATTGATTGATATGGTGTGACTGCTCATCCATAGCACTACACTTAATG ATAAGAAGGAAGAAGCTTTCATGCAGTCTTTGCCGTCAAGCTACTGAATG AAAACGAATCAAAAGACTGAATGATTTGTTCAGCAAAACAATCGAAGAAA ATCATAGCTGTGCGTGCACTCAGGGACTTGCTGAGCCAGGCAATGTGCAC TGACCAGTTTGACAGGAATTTGAACACGACTGCTCTGTTCAGCAGAATCA TGCTTCTTTGCTTTCACGTGAAAGTGTTAGTGTTGCCGCTGCATTTTGTG AACTTGCCATACAGACACCTGAGCTGTTGCCCAATGTGATCAATCGCTTC CCTGCTTGCATATGAATGCAGACGCTTCTTTCGGAAGCAGCTCGCGGATG GGAATGTGCAAATAGACGGGAGGGTGAACAAGAGGTGCGTTGTAGCGTTG AGCCGCAGGCTTAGGATTGCCGCCAAGGGTTTCTTGTATTATGGACCACA CTGTCACCCTGCATATTCTGCATTCCACACGCAGTTAATTGTAGTTCAGC TTTTTATAGTGGTGTGTTGAGCAGCCGCAGTTGCTGTTTACACCTGTGGC TGTGACGTTTTTGTAATTGCTTGTATAGCATGTCTCATGACATTTGGTCA AGTGTATGACCTACAGCCTGAAACAGGAGTATGGGGCGTTGCTGCCTGTC TGTCAAGTCTGTCGTTCTGATGGTAGCTATGACCTATCGTCCGCACCGCT ATTATGCGACCGCCTGGTTGAGTTCTAGTCAAAATCGATTTGTACACAAC ATGCTGGCTACTTGGTGCCTTATTGAACCCCTCGCACGGCAATGGACAGG ATTGACACATCGCTGATACAATCAACCCCACGGCCCAGTCTACATCCAGC TTAGCATCCTGCTCCGCATTTGCAATTGCTATGGCTGTGATGAAATAGTT CACAAGGCGTAAGGCTCATTGTACCAGCCCACAGCTTACGTCTTATTGTC GGGGCACCACGGCATGGCACAGGCCTAGGCCCTGGCAACTGCCCACAACC AGGGTTCCAAAAGCTTACAGCCCGCTGCGCCCATACCTACATACCCCGCA CCTCTCGTCAAACCACGCAGGCTGGTGCGCGTGCGGCCCGGGCAGACCAT CACGGTGGCCGCGGCCGCCGCGGACGCCGTTGCGCCGCCCAGCGAACAGC TCCCCGCGCAAGATTTGAAGTTGCACGTCGTCTACGAGGATGAGCACATC ATCGTGGTGGCGAAGCCGCCGGGCATTGTGGTGCAGCCGATGGCGTCGCA GCCGCGCGGCACGCTGCTGAACGGCGTGCTGCACCACATGGTGGCGCGCG GGGAGTGCGCGGCGGGGGACGAGGTGGCGGCGCAGGGGCTGCTGCAGGGG GTGGTGCACCGGCTGGACAGGGACACGAGCGGCATTGTCATCGTGGCCAA GAACCTCGAGGTATGCTGATCATCACTGTATGCTGCTGCATGTGCTGTCG TGCATCCGTGGTCGCAGAGCAGGGATGAGTGTATGTTTGCAGGGGTTTTC TGGCATCGTAGCCAAGAACCTGAGGAGGTGCATCGGCGGTGTCTGCATGC TGCTGCACGAGCTCGCACAAGTCAATGCATCTGAATTTGAGGAAGAGAAT TGAGTGGAAGTATATGAGACGTAATTGTGGACAAGAACCTCGGGGCGCGC TGACGGTCTCCTGTCTGCTGCTGCACGAGCTATCATGCATCTGGATCTGA AGAGCAGGATTAAGTGTATGGTCGCAGGGGTTTTCAGGGTCAACTGCAAC TTCAAGTTACTTCAGCAAGGTTCTGCGTGCAGGGGGCGTGCTGCGCATCG CAAAATTTGGATATCAGTGACATGGTTATGACAGCAAGGCAGTTGTGGCA GGTTTGCACTCTGTCATGCTTCAGTTGCAATGGCACCAGTGCAACCGGAC AAGTTTTCCACTTCTCATCACCTGCGCTTGGCCAGACAAGTTTTGCGCTT TACATGACTCGCGCTTGGTACGCGCATGGTGCAGATGTGTCCACCAATAT CCATCAGGGCGCTACACCTTGCCACTCTGAAACGCTATCGGCCTCACCCT ACTTCGCCTCCACGTGCAGGCCAGCAGCACTCTTTCGGCGATGTTCAAGT CGCGGAAAGTCAGCAAGACCTACCTGGCGGTCACAGCTGGCTTGCCAAAC CCTGCGCGCTGCGCCCTCGAACCCGCTGACAGCGGCGGCGACGGCACCGG CCCTTACACCATTGACGCGCCCCTATACAAGCGCGCCAGCGGCAAGATGG CGGTGGCAACGCCTCAGCAGCTGCAGCAGCAGCAGCAGCAGCAACAAACC GCTTCAGCAATAGACGTAAAGCCGGCGCTCACGCGCGTCAAGGCGCTGCC GCGCAGCGCTGCTGCCGGCGGCGGCAGCGGCAGCAGCAGCGGCAGCGGCG GCCTCCGCGCGCTGCAGGTGGAGATCACCACCGGGCGCCAGCACCAGATC CGCGCGCACCTGCTGCACGCGGGCGCGCCCGTGATCGGCGACGTCACCTA CTGCGCCGGCGGCGACGCCGGCGCGGCGCGCGCGGCGGCGGCGGCGCTCG GCGTCGCGCGGCCGCTGCTGCACGCGCTGTCGCTCACGCTGCACCACCCC GTCACCAACGCGCGCCTCGTGCTGGTGGCGCCGCTGCCCGCGGACATGTG GCGCGTGCTGAGCGATGTGGTGGGGCCGGACGCTGCGCGCAAGCTGCCGC AGCTGCCCGCCGACGCGGACGGCGCTGCTGCCGCCGCCGCTGCCGCCGCC GCTGCCGGCGCGGCCGCGGGCGTCCGTGCCGCTGCCGCTGCCGCTGGCGG TCGTGGCGTTCGTGCCAGTGCTGCTGCTGCTGCAGTGTCGTCGGGTGGTG CGAGGCCATCGGCCGACGGCGCTGCTGCGTCGAAGCGGACGCGAGCGAGC GCGCCTGGCGCACTGAAGATGGCCAAGCCCAAGGTCCGGGTGAAGGACGC TGCGGCCGCGTTGAATCTGGCGAAGCTCGCACAGAACGCGATCGGCCCTC CGTCCGACAAATAGAGTCTGG
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Coding sequence (CDS) from alignment at Contig_9:178492..181812-

>mRNA_3520 ID=mRNA_3520|Name=jgi.p|Trimin1|347183|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=1443bp|location=Sequence derived from alignment at Contig_9:178492..181812- (Tribonema minus UTEX_B_3156 )
ATGGCAGCTACGGGAGAGCGGATAACAGTGGAGCAGGAGGACGGCAATGC
GCCAATCGACTGGCTGCTGAGCAGGAAATTGCCGCATAGAAGCAGACGCT
TCTTTCGGAAGCAGCTCGCGGATGGGAATGTGCAAATAGACGGGAGGGTG
AACAAGAGGCTGGTGCGCGTGCGGCCCGGGCAGACCATCACGGTGGCCGC
GGCCGCCGCGGACGCCGTTGCGCCGCCCAGCGAACAGCTCCCCGCGCAAG
ATTTGAAGTTGCACGTCGTCTACGAGGATGAGCACATCATCGTGGTGGCG
AAGCCGCCGGGCATTGTGGTGCAGCCGATGGCGTCGCAGCCGCGCGGCAC
GCTGCTGAACGGCGTGCTGCACCACATGGTGGCGCGCGGGGAGTGCGCGG
CGGGGGACGAGGTGGCGGCGCAGGGGCTGCTGCAGGGGGTGGTGCACCGG
CTGGACAGGGACACGAGCGGCATTGTCATCGTGGCCAAGAACCTCGAGGC
CAGCAGCACTCTTTCGGCGATGTTCAAGTCGCGGAAAGTCAGCAAGACCT
ACCTGGCGGTCACAGCTGGCTTGCCAAACCCTGCGCGCTGCGCCCTCGAA
CCCGCTGACAGCGGCGGCGACGGCACCGGCCCTTACACCATTGACGCGCC
CCTATACAAGCGCGCCAGCGGCAAGATGGCGGTGGCAACGCCTCAGCAGC
TGCAGCAGCAGCAGCAGCAGCAACAAACCGCTTCAGCAATAGACGTAAAG
CCGGCGCTCACGCGCGTCAAGGCGCTGCCGCGCAGCGCTGCTGCCGGCGG
CGGCAGCGGCAGCAGCAGCGGCAGCGGCGGCCTCCGCGCGCTGCAGGTGG
AGATCACCACCGGGCGCCAGCACCAGATCCGCGCGCACCTGCTGCACGCG
GGCGCGCCCGTGATCGGCGACGTCACCTACTGCGCCGGCGGCGACGCCGG
CGCGGCGCGCGCGGCGGCGGCGGCGCTCGGCGTCGCGCGGCCGCTGCTGC
ACGCGCTGTCGCTCACGCTGCACCACCCCGTCACCAACGCGCGCCTCGTG
CTGGTGGCGCCGCTGCCCGCGGACATGTGGCGCGTGCTGAGCGATGTGGT
GGGGCCGGACGCTGCGCGCAAGCTGCCGCAGCTGCCCGCCGACGCGGACG
GCGCTGCTGCCGCCGCCGCTGCCGCCGCCGCTGCCGGCGCGGCCGCGGGC
GTCCGTGCCGCTGCCGCTGCCGCTGGCGGTCGTGGCGTTCGTGCCAGTGC
TGCTGCTGCTGCAGTGTCGTCGGGTGGTGCGAGGCCATCGGCCGACGGCG
CTGCTGCGTCGAAGCGGACGCGAGCGAGCGCGCCTGGCGCACTGAAGATG
GCCAAGCCCAAGGTCCGGGTGAAGGACGCTGCGGCCGCGTTGAATCTGGC
GAAGCTCGCACAGAACGCGATCGGCCCTCCGTCCGACAAATAG
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