mRNA_3501 (mRNA) Tribonema minus UTEX_B_3156
Overview
Homology
BLAST of jgi.p|Trimin1|347173 vs. uniprot
Match: A0A836C8P7_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836C8P7_9STRA) HSP 1 Score: 1377 bits (3565), Expect = 0.000e+0 Identity = 713/713 (100.00%), Postives = 713/713 (100.00%), Query Frame = 2 Query: 86 MFRSGRCWCLIWLAGAHVVGAQRVPKATPAPTVAETLAPENCKFTQTVCKGIGAAAGFTGDIGAVSAVNKGILCCNPDHKCEQDSFGAPRCVLNVGEEICDSGDITLKDLRSASPQDSQISVPLPLFSSVSGISNTPAPTKEFEASLTSSAPFFKQFDKSEDGKFSRVYSPLVYAKCNTTETTCVRKTFAGVGTAVYCMNIADAKAKPCDFGFKKVVCKPNAECVKDPQDEGHCLPTKGANSVKMCTNGLKGKDGRYTICKSEATCAVSSSKVPVPLCIGDGFKLCDGGGPKPNICLSSEKCVIDKNKNGQCLKKDQFLCDAGTPKGAVAVCDGXXXXXXXXXXXXXXXXXXXXXXXXXFAIGTASSSSSTFNDAQDGVLYCDTNKSQNCLIQLKTNSPTCLNTAASKTACRDDNLNFSCGSGFKCNKSTGACEATQNYGVAPDQLQGAAFSAGANLAATALAALLATLALFEALAKNTERYFERCTRRDPQFQAAEAQFAEETSLRRPGVAVAANYAAVTYDTLSVRTRHYFTWERRMRSFNSYRARERAVARVARDIIGPRDTGVHRVVFFGKAEFGSGSRGPIPRKRLIRHLACLAAVVLTDEFRTSITCPQDRAPLHRLALGSRVFRCANARPGVPVEVRCNVGAIDRDHAGADNILMCGVAMLLGGVRPAEFCRGPDCGKAASQAHVWVNPHAGERLPALLLLLLWGM 2224 MFRSGRCWCLIWLAGAHVVGAQRVPKATPAPTVAETLAPENCKFTQTVCKGIGAAAGFTGDIGAVSAVNKGILCCNPDHKCEQDSFGAPRCVLNVGEEICDSGDITLKDLRSASPQDSQISVPLPLFSSVSGISNTPAPTKEFEASLTSSAPFFKQFDKSEDGKFSRVYSPLVYAKCNTTETTCVRKTFAGVGTAVYCMNIADAKAKPCDFGFKKVVCKPNAECVKDPQDEGHCLPTKGANSVKMCTNGLKGKDGRYTICKSEATCAVSSSKVPVPLCIGDGFKLCDGGGPKPNICLSSEKCVIDKNKNGQCLKKDQFLCDAGTPKGAVAVCDGXXXXXXXXXXXXXXXXXXXXXXXXXFAIGTASSSSSTFNDAQDGVLYCDTNKSQNCLIQLKTNSPTCLNTAASKTACRDDNLNFSCGSGFKCNKSTGACEATQNYGVAPDQLQGAAFSAGANLAATALAALLATLALFEALAKNTERYFERCTRRDPQFQAAEAQFAEETSLRRPGVAVAANYAAVTYDTLSVRTRHYFTWERRMRSFNSYRARERAVARVARDIIGPRDTGVHRVVFFGKAEFGSGSRGPIPRKRLIRHLACLAAVVLTDEFRTSITCPQDRAPLHRLALGSRVFRCANARPGVPVEVRCNVGAIDRDHAGADNILMCGVAMLLGGVRPAEFCRGPDCGKAASQAHVWVNPHAGERLPALLLLLLWGM Sbjct: 1 MFRSGRCWCLIWLAGAHVVGAQRVPKATPAPTVAETLAPENCKFTQTVCKGIGAAAGFTGDIGAVSAVNKGILCCNPDHKCEQDSFGAPRCVLNVGEEICDSGDITLKDLRSASPQDSQISVPLPLFSSVSGISNTPAPTKEFEASLTSSAPFFKQFDKSEDGKFSRVYSPLVYAKCNTTETTCVRKTFAGVGTAVYCMNIADAKAKPCDFGFKKVVCKPNAECVKDPQDEGHCLPTKGANSVKMCTNGLKGKDGRYTICKSEATCAVSSSKVPVPLCIGDGFKLCDGGGPKPNICLSSEKCVIDKNKNGQCLKKDQFLCDAGTPKGAVAVCDGXXXXXXXXXXXXXXXXXXXXXXXXXFAIGTASSSSSTFNDAQDGVLYCDTNKSQNCLIQLKTNSPTCLNTAASKTACRDDNLNFSCGSGFKCNKSTGACEATQNYGVAPDQLQGAAFSAGANLAATALAALLATLALFEALAKNTERYFERCTRRDPQFQAAEAQFAEETSLRRPGVAVAANYAAVTYDTLSVRTRHYFTWERRMRSFNSYRARERAVARVARDIIGPRDTGVHRVVFFGKAEFGSGSRGPIPRKRLIRHLACLAAVVLTDEFRTSITCPQDRAPLHRLALGSRVFRCANARPGVPVEVRCNVGAIDRDHAGADNILMCGVAMLLGGVRPAEFCRGPDCGKAASQAHVWVNPHAGERLPALLLLLLWGM 713
BLAST of jgi.p|Trimin1|347173 vs. uniprot
Match: A0A836CHE2_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CHE2_9STRA) HSP 1 Score: 448 bits (1152), Expect = 4.850e-151 Identity = 223/229 (97.38%), Postives = 226/229 (98.69%), Query Frame = 2 Query: 1496 LFEALAKNTERYFERCTRRDPQFQAAEAQFAEETSLRRPGVAVAANYAAVTYDTLSVRTRHYFTWERRMRSFNSYRARERAVARVARDIIGPRDTGVHRVVFFGKAEFGSGSRGPIPRKRLIRHLACLAAVVLTDEFRTSITCPQDRAPLHRLALGSRVFRCANARPGVPVEVRCNVGAIDRDHAGADNILMCGVAMLLGGVRPAEFCRGPDCGKAASQAHVWVNPHAG 2182 LFEALAKN+ERYFERCTRRDPQFQAAEAQF E+TSLRRPGVAVAANYAAVTYDTLSVRTRHYFTWERRMRSFNSYRARERAVARVARDIIGPRDTGVHRVVFFGKAEFGSGSRGPIPRKRLIRHLACLAAVVLTDEFRTSITCPQDRAPLHRLALGSRVFRCANARP VPVEVR NVGAIDRDHAGADNILMCGVAMLLGGVRPAEFCRGPDCGKAASQAHVWV+PHAG Sbjct: 8 LFEALAKNSERYFERCTRRDPQFQAAEAQFTEQTSLRRPGVAVAANYAAVTYDTLSVRTRHYFTWERRMRSFNSYRARERAVARVARDIIGPRDTGVHRVVFFGKAEFGSGSRGPIPRKRLIRHLACLAAVVLTDEFRTSITCPQDRAPLHRLALGSRVFRCANARPDVPVEVRRNVGAIDRDHAGADNILMCGVAMLLGGVRPAEFCRGPDCGKAASQAHVWVDPHAG 236
BLAST of jgi.p|Trimin1|347173 vs. uniprot
Match: A0A835Z5K2_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z5K2_9STRA) HSP 1 Score: 444 bits (1143), Expect = 2.190e-142 Identity = 220/228 (96.49%), Postives = 224/228 (98.25%), Query Frame = 2 Query: 1499 FEALAKNTERYFERCTRRDPQFQAAEAQFAEETSLRRPGVAVAANYAAVTYDTLSVRTRHYFTWERRMRSFNSYRARERAVARVARDIIGPRDTGVHRVVFFGKAEFGSGSRGPIPRKRLIRHLACLAAVVLTDEFRTSITCPQDRAPLHRLALGSRVFRCANARPGVPVEVRCNVGAIDRDHAGADNILMCGVAMLLGGVRPAEFCRGPDCGKAASQAHVWVNPHAG 2182 FEALAKN++RYFERC RRDPQFQAAEAQF E+TSLRRPGVAVAANYAAVTYDTLSVRTRHYFTWERRMRSFNSYRARERAVARVARDIIGPRDTGVHRVVFFGKAEFGSGSRGPIPRKRLIRHLACLAAVVLTDE+RTSITCPQDRAPLHRLALGSRVFRCANARPGVPVEVRCNVGAIDRDHAGADNILMCGVAMLLGGVRPA F RGPDCGKAASQAHVWVNPHAG Sbjct: 519 FEALAKNSQRYFERCNRRDPQFQAAEAQFTEQTSLRRPGVAVAANYAAVTYDTLSVRTRHYFTWERRMRSFNSYRARERAVARVARDIIGPRDTGVHRVVFFGKAEFGSGSRGPIPRKRLIRHLACLAAVVLTDEYRTSITCPQDRAPLHRLALGSRVFRCANARPGVPVEVRCNVGAIDRDHAGADNILMCGVAMLLGGVRPAAFRRGPDCGKAASQAHVWVNPHAG 746
BLAST of jgi.p|Trimin1|347173 vs. uniprot
Match: A0A835YQ26_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YQ26_9STRA) HSP 1 Score: 357 bits (917), Expect = 1.420e-112 Identity = 181/198 (91.41%), Postives = 188/198 (94.95%), Query Frame = 2 Query: 1499 FEALAKNTERYFERCTRRDPQFQAAEAQFAEETSLRRPGVAVAANYAAVTYDTLSVRTRHYFTWERRMRSFNSYRARERAVARVARDIIGPRDTGVHRVVFFGKAEFGSGSRGPIPRKRLIRHLACLAAVVLTDEFRTSITCPQDRAPLHRLALGSRVFRCANARPGVPVEVRCNVGAIDRDHAGADNILMCGVAMLL 2092 F+ALAKN+ERYFE+CTRRDPQFQ AEA F E+TSLRRPGVAVAANYAAVTYDTLSVRTRHY TWERRMRSFNSYRARERAVARVARDIIGPRDTGVHRVV F KAEFGSGSRGPI RKRLIRHLACLAA+VLTDE+RTSITCPQDRAPLHRLALGSRVFRCANA PGVPVEVRCNVGAI+ DHAGADNILMCG AMLL Sbjct: 257 FDALAKNSERYFEKCTRRDPQFQEAEALFTEQTSLRRPGVAVAANYAAVTYDTLSVRTRHYCTWERRMRSFNSYRARERAVARVARDIIGPRDTGVHRVVPFRKAEFGSGSRGPIQRKRLIRHLACLAAMVLTDEYRTSITCPQDRAPLHRLALGSRVFRCANATPGVPVEVRCNVGAINCDHAGADNILMCGAAMLL 454
BLAST of jgi.p|Trimin1|347173 vs. uniprot
Match: A0A835Z192_9STRA (FAD-binding PCMH-type domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z192_9STRA) HSP 1 Score: 360 bits (924), Expect = 1.790e-109 Identity = 182/191 (95.29%), Postives = 184/191 (96.34%), Query Frame = 2 Query: 1526 RYFERCTRRDPQFQAAEAQFAEETSLRRPGVAVAANYAAVTYDTLSVRTRHYFTWERRMRSFNSYRARERAVARVARDIIGPRDTGVHRVVFFGKAEFGSGSRGPIPRKRLIRHLACLAAVVLTDEFRTSITCPQDRAPLHRLALGSRVFRCANARPGVPVEVRCNVGAIDRDHAGADNILMCGVAMLLGG 2098 RYFERCTRRDPQFQ AEAQF E+TSLRRPGVAVAANYAAVTYDTLSVRTRHYFTWERRMRSFNSYRA ERAVARVARDIIGPRDTGVHRVVFFGKA+ GSGS GPIPRKRLIRHLACLAAVVLTDEFRTSITCPQDRAPLHRLA GSRVFRCANARPGVPV VRCNVGAIDRDHAGADNILMCGVAMLLGG Sbjct: 226 RYFERCTRRDPQFQEAEAQFTEQTSLRRPGVAVAANYAAVTYDTLSVRTRHYFTWERRMRSFNSYRACERAVARVARDIIGPRDTGVHRVVFFGKAKCGSGSLGPIPRKRLIRHLACLAAVVLTDEFRTSITCPQDRAPLHRLAWGSRVFRCANARPGVPVVVRCNVGAIDRDHAGADNILMCGVAMLLGG 416
BLAST of jgi.p|Trimin1|347173 vs. uniprot
Match: A0A836CHH2_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CHH2_9STRA) HSP 1 Score: 304 bits (778), Expect = 1.050e-95 Identity = 163/234 (69.66%), Postives = 173/234 (73.93%), Query Frame = 2 Query: 1481 LATLALFEALAKNTERYFERCTRRDPQFQAAEAQFAEETSLRRPGVAVAANYAAVTYDTLSVRTRHYFTWERRMRSFNSYRARERAVARVARDIIGPRDTGVHRVVFFGKAEFGSGSRGPIPRKRLIRHLACLAAVVLTDEFRTSITCPQDRAPLHRLALGSRVFRCANARPGVPVEVRCNVGAIDRDHAGADNILMCGVAMLLGGVRPAEFCRGPDCGKAASQAHVWVNPHAG 2182 + +L FEALAKN++RYFE+CTRRDPQFQAAEA F E+TSLRRPGVAVAANY AV YDTLSV TR+Y TWERRMRSFNSYRARERAVA AEF +GSRGPIPRKRLIRHLACLAAVVL DE+RTSITCPQDR PLHR+ALG R AIDRDHAGADNILMCGVAMLL GV P EFCRGP CGK ASQAHVWVNP AG Sbjct: 1 MCSLPSFEALAKNSKRYFEKCTRRDPQFQAAEAMFMEQTSLRRPGVAVAANYVAVPYDTLSVHTRYYCTWERRMRSFNSYRARERAVA---------------------SAEFRNGSRGPIPRKRLIRHLACLAAVVLNDEYRTSITCPQDRTPLHRIALGVR--------------------AIDRDHAGADNILMCGVAMLLWGVHPPEFCRGPGCGKEASQAHVWVNPRAG 193
BLAST of jgi.p|Trimin1|347173 vs. uniprot
Match: A0A835YQT5_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YQT5_9STRA) HSP 1 Score: 307 bits (786), Expect = 4.030e-88 Identity = 159/210 (75.71%), Postives = 177/210 (84.29%), Query Frame = 2 Query: 1499 FEALAKNTERYFERCTRRDPQFQAAEAQFAEETSLRRPGVAVAANYAAVTYDTLSVRTRHYFTWERRMRSFNSYRARERAVARVARDIIGPRDTGVHRVVFFGKAEFGSGSRGPIPRKRLIRHLACLAAVVLTDEFRTSITCPQDRAPLHRLALGSRVFRCANARPGVPVEVRCNVGAIDRDHAGADNILMCGVAMLLGGVRPAEFCRGP 2128 +EALAKN++RY++ C +RDPQ AAE F ETSLRRPG A AANYA VTY TLSVR RHY + RR+R+F++YRARERAVA VARDI+GP D V +VVFFGKAEFGSGSRGPIPRKRLIRHLA LA VVLT+E RTSITCPQDRAPLHRLALGSRVF CANARP VPVE +CNV AIDRDH+GA NI+MCGV +L GVRP EFCRGP Sbjct: 162 YEALAKNSQRYWKMCRKRDPQLDAAENLFTPETSLRRPG-APAANYATVTYQTLSVRARHYLSHTRRIRTFDAYRARERAVAWVARDILGPPDPSVRKVVFFGKAEFGSGSRGPIPRKRLIRHLASLAPVVLTNEHRTSITCPQDRAPLHRLALGSRVFCCANARPEVPVESQCNVRAIDRDHSGAANIVMCGVEEMLYGVRPPEFCRGP 370
BLAST of jgi.p|Trimin1|347173 vs. uniprot
Match: A0A835Z8K6_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z8K6_9STRA) HSP 1 Score: 270 bits (690), Expect = 3.990e-82 Identity = 144/195 (73.85%), Postives = 156/195 (80.00%), Query Frame = 2 Query: 1541 CTRRDPQFQAAEAQFAEETSLRRPGVAVAANYAAVTYDTLSVRTRHYFTWERRMRSFNSYRARERAVARVARDIIGPRDTGVHRVVFFGKAEFGSGSRGPIPRKRLIRHLACLAAVVLTDEFRTSITCPQDRAPLHRLALGSRVFRCANARPGVPVEVRCNVGAIDRDHAGADNILMCGVAMLLGGVRPAEFCRG 2125 C ++DPQ AAE F TSLR+PG A AANYA VTY TLSVR RHY T R+ +F++YRARERAVARVARDI+GP D V +VVFFGKAEFGSGSRGP+PRKRLIRHLACLA VVL DEFRTSITCPQDRAPL R ALGSRVF C N+ VP E RCNV AIDRDHAGADNI MCGV +L GVRP EFCRG Sbjct: 2 CRKQDPQMDAAEQLFTPATSLRKPG-APAANYATVTYQTLSVRARHYHT--SRILTFDAYRARERAVARVARDILGPPDPSVRKVVFFGKAEFGSGSRGPMPRKRLIRHLACLAPVVLGDEFRTSITCPQDRAPLRRSALGSRVFCCVNSGLDVPEESRCNVKAIDRDHAGADNIDMCGVMAMLYGVRPPEFCRG 193
BLAST of jgi.p|Trimin1|347173 vs. uniprot
Match: A0A836CCS7_9STRA (Uncharacterized protein n=2 Tax=Tribonema minus TaxID=303371 RepID=A0A836CCS7_9STRA) HSP 1 Score: 212 bits (540), Expect = 2.550e-60 Identity = 114/180 (63.33%), Postives = 134/180 (74.44%), Query Frame = 2 Query: 1580 QFAEETSLRRPGVAVAANYAAVTYDTLSVRTRHYFTWERRMRSFNSYRARERAVARVARDIIGPRDTGVHRVVFFGKAEFGSGSRGPIPRKRLIRHLACLAAVVLTDEFRTSITCPQDRAPLHRLALGSRVFRCANARPGVPVEVRCNVGAIDRDHAGADNILMCGVAMLLGGVRPAEFC 2119 +F ++ RPG + ++Y VTY TL +R RH+ + ERRMR+ +Y ARERAVAR ARDIIGPRD V RVVFFGKAEFGSGSRGPIP KRLIR ++CL LTDE+ TS+TCPQDRAPLHR A+GSRVF CANARP + +CNV AIDRDHAG NILMCGVA L + P + C Sbjct: 7 KFNSRSNEHRPGAS--SDYDVVTYQTLVLRARHHCSCERRMRTTTAYHARERAVARAARDIIGPRDPTVRRVVFFGKAEFGSGSRGPIPCKRLIRQISCLVLAALTDEYCTSMTCPQDRAPLHRSAMGSRVFCCANARPE---DAQCNVHAIDRDHAGTVNILMCGVA-LNRALPPQQHC 180
BLAST of jgi.p|Trimin1|347173 vs. uniprot
Match: A0A835YPN9_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YPN9_9STRA) HSP 1 Score: 203 bits (517), Expect = 1.770e-57 Identity = 105/146 (71.92%), Postives = 116/146 (79.45%), Query Frame = 2 Query: 1499 FEALAKNTERYFERCTRRDPQFQAAEAQFAEETSLRRPGVAVAANYAAVTYDTLSVRTRHYFTWERRMRSFNSYRARERAVARVARDIIGPRDTGVHRVVFFGKAEFGSGSRGPIPRKRLIRHLACLAAVVLTDEFRTSITCPQDR 1936 FEALAK + RYFE+C +R QF+AA+A F EE SLRRPG A AN+AAVT L +RTRH+ TWERRMRSFN+YR RERAVARVARDIIGPR V V FFGKAEFGSGSR PIPRKR IRHLACL VLTDE R+S TCP+DR Sbjct: 36 FEALAKKSRRYFEKCAKRAQQFRAAKALFTEEASLRRPGPATTANFAAVTDSMLFMRTRHHCTWERRMRSFNTYRGRERAVARVARDIIGPRKPQVRHVTFFGKAEFGSGSRNPIPRKRFIRHLACLEPTVLTDELRSSSTCPKDR 181 The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|347173 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 24
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following exon feature(s) are a part of this mRNA:
The following five_prime_UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
spliced messenger RNA >mRNA_3501 ID=mRNA_3501|Name=jgi.p|Trimin1|347173|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=2227bp|location=Sequence derived from alignment at Contig_9:27267..34126+ (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon. TCCCACTGCAATCAACGGCAAGCCTCAGGTTGTGCCTTCGCTCGCTTGCAback to top protein sequence of jgi.p|Trimin1|347173 >Trimin1|347173|estExt_Genemark1.C_Ctg_90011 ID=Trimin1|347173|estExt_Genemark1.C_Ctg_90011|Name=jgi.p|Trimin1|347173|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=714bp MFRSGRCWCLIWLAGAHVVGAQRVPKATPAPTVAETLAPENCKFTQTVCKback to top mRNA from alignment at Contig_9:27267..34126+ Legend: exonfive_prime_UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_3501 ID=mRNA_3501|Name=jgi.p|Trimin1|347173|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=6860bp|location=Sequence derived from alignment at Contig_9:27267..34126+ (Tribonema minus UTEX_B_3156 )back to top Coding sequence (CDS) from alignment at Contig_9:27267..34126+ >mRNA_3501 ID=mRNA_3501|Name=jgi.p|Trimin1|347173|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=2142bp|location=Sequence derived from alignment at Contig_9:27267..34126+ (Tribonema minus UTEX_B_3156 )back to top |