mRNA_3500 (mRNA) Tribonema minus UTEX_B_3156

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
Namejgi.p|Trimin1|159476
Unique NamemRNA_3500
TypemRNA
OrganismTribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Homology
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BLAST of jgi.p|Trimin1|159476 vs. uniprot
Match: A0A836C756_9STRA (S-adenosyl-L-methionine-dependent methyltransferase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836C756_9STRA)

HSP 1 Score: 371 bits (952), Expect = 2.030e-130
Identity = 172/172 (100.00%), Postives = 172/172 (100.00%), Query Frame = 1 
Query:    1 MYLIDLFCGAGGFSQGAVQAGCEVTLAVDSWQRALDAHELNHPGCRHVRMEMGGDMDDFVSFVEEHLTTGGIDMSQCHLHASPPCQPFSAWKRCFDQPLGYKDQGLELVKWTMQVIDRLQLASFTIEEVPDPHLQVLFDDWPSASASQTYYLHRYGVPNTRCRLIVSSVHST 516
            MYLIDLFCGAGGFSQGAVQAGCEVTLAVDSWQRALDAHELNHPGCRHVRMEMGGDMDDFVSFVEEHLTTGGIDMSQCHLHASPPCQPFSAWKRCFDQPLGYKDQGLELVKWTMQVIDRLQLASFTIEEVPDPHLQVLFDDWPSASASQTYYLHRYGVPNTRCRLIVSSVHST
Sbjct:    1 MYLIDLFCGAGGFSQGAVQAGCEVTLAVDSWQRALDAHELNHPGCRHVRMEMGGDMDDFVSFVEEHLTTGGIDMSQCHLHASPPCQPFSAWKRCFDQPLGYKDQGLELVKWTMQVIDRLQLASFTIEEVPDPHLQVLFDDWPSASASQTYYLHRYGVPNTRCRLIVSSVHST 172
[Close]
BLAST of jgi.p|Trimin1|159476 vs. uniprot
Match: A0A835Z412_9STRA (S-adenosyl-L-methionine-dependent methyltransferase (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z412_9STRA)

HSP 1 Score: 176 bits (445), Expect = 2.270e-54
Identity = 78/87 (89.66%), Postives = 84/87 (96.55%), Query Frame = 1 
Query:    7 LIDLFCGAGGFSQGAVQAGCEVTLAVDSWQRALDAHELNHPGCRHVRMEMGGDMDDFVSFVEEHLTTGGIDMSQCHLHASPPCQPFS 267
            LIDLFCGAGGFSQGAVQAGCEVTLAVDSWQ+ALDAHE NHPGCRHVRMEMGGDMD+FVSFV+EHL++ GI MSQCH+HASPPCQPFS
Sbjct:    1 LIDLFCGAGGFSQGAVQAGCEVTLAVDSWQKALDAHEQNHPGCRHVRMEMGGDMDEFVSFVQEHLSSRGIAMSQCHIHASPPCQPFS 87
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BLAST of jgi.p|Trimin1|159476 vs. uniprot
Match: A0A835ZAI0_9STRA (S-adenosyl-L-methionine-dependent methyltransferase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZAI0_9STRA)

HSP 1 Score: 125 bits (314), Expect = 5.100e-32
Identity = 69/167 (41.32%), Postives = 95/167 (56.89%), Query Frame = 1 
Query:    7 LIDLFCGAGGFSQGAVQAGCEVTLAVDSWQRALDAHELNHPGCRHVRMEMGGDMDDFVSFVEEHLTTGGIDMSQCHLHASPPCQPFSAWKRCFDQPLGYKDQGLELVKWTMQVIDRLQLASFTIEEVPDPHLQVLFDDWPSASASQTYYLHRYGVPNTRCRLIVSSV 507
            ++DLFCG GGFS+GA QAG  V LAVDSW+ ALDAH   HP   H   E+GGD+ +F   V   + TG     + HLH SPPCQ  S+       P G + +G+ LV W + V+D L+  S+T+E+VP P +  L  +  +      +    +GVP  R R+I  +V
Sbjct:   14 VVDLFCGIGGFSEGARQAGASVALAVDSWRAALDAHASRHPEAEHWCEELGGDVAEFAGRVRAAVPTG----CRLHLHRSPPCQQLSSLN-----PGGDRVEGMRLVTWYLDVVDALRPHSWTMEQVPHPAVLRLLTERRAPFGVLRF--DEFGVPTARRRVIAGTV 169
[Close]
BLAST of jgi.p|Trimin1|159476 vs. uniprot
Match: A0A835YWN5_9STRA (S-adenosyl-L-methionine-dependent methyltransferase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YWN5_9STRA)

HSP 1 Score: 125 bits (313), Expect = 5.270e-32
Identity = 71/169 (42.01%), Postives = 95/169 (56.21%), Query Frame = 1 
Query:    1 MYLIDLFCGAGGFSQGAVQAGCEVTLAVDSWQRALDAHELNHPGCRHVRMEMGGDMDDFVS----FVEEHLTTGGIDMSQCHLHASPPCQPFSAWKRCFDQPLGYKDQGLELVKWTMQVIDRLQLASFTIEEVPDPHLQVLFDDWPSASASQTYYLHRYGVPNTRCRLI 495
            +Y+IDLFCGAGGFS+GA +AG  V LAVD W+ ALD H  NH  C H    +GGD   FV+     V   +  GG+     HLH SPPCQ  S+   C       + +G+ LV+WT  V D LQ  SFT+E+VP+  L   +   P +     Y +  +G+P +R R+I
Sbjct:    2 IYVIDLFCGAGGFSEGASRAGAVVILAVDCWKAALDVHAANHGDCEHWNEPLGGDPAQFVARLRRVVSRRVPCGGL----VHLHGSPPCQNLSS-VNCMRN----EREGMRLVEWTFAVGDLLQPDSFTVEQVPNAALLREYGHLPHS----VYAMSEHGIPQSRRRVI 157
[Close]
BLAST of jgi.p|Trimin1|159476 vs. uniprot
Match: A0A836CNB4_9STRA (S-adenosyl-L-methionine-dependent methyltransferase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CNB4_9STRA)

HSP 1 Score: 124 bits (311), Expect = 2.030e-31
Identity = 66/165 (40.00%), Postives = 90/165 (54.55%), Query Frame = 1 
Query:    1 MYLIDLFCGAGGFSQGAVQAGCEVTLAVDSWQRALDAHELNHPGCRHVRMEMGGDMDDFVSFVEEHLTTGGIDMSQCHLHASPPCQPFSAWKRCFDQPLGYKDQGLELVKWTMQVIDRLQLASFTIEEVPDPHLQVLFDDWPSASASQTYYLHRYGVPNTRCRLI 495
            +Y+IDLFCGAGGFS+GA +AG  V LAVD WQ ALD H LNHP   H   E+G D  +F   +   +        + HLHASPPCQ      R   +     D+G+ LV+W+ +V + L   + T+E+V  P L   +   P     + Y +  +GVP  R R+I
Sbjct:    2 LYVIDLFCGAGGFSEGARRAGATVILAVDCWQMALDVHALNHPDVEHWLEELGEDPREFADRLRRVIADKAPPGGRVHLHASPPCQNLCGANRRRSE-----DEGMRLVEWSFRVAEALGSVTVTVEQVASPVLLRAYSHLPH----RVYDMSEHGVPQIRTRVI 157
[Close]
BLAST of jgi.p|Trimin1|159476 vs. uniprot
Match: A0A835Z6C7_9STRA (S-adenosyl-L-methionine-dependent methyltransferase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z6C7_9STRA)

HSP 1 Score: 123 bits (309), Expect = 2.810e-31
Identity = 75/175 (42.86%), Postives = 98/175 (56.00%), Query Frame = 1 
Query:    1 MYLIDLFCGAGGFSQGAVQAGCEVTLAVDSWQRALDAHELNHPGCRHVRMEMGGDMDDFV----SFVEEHLTTGGIDMSQCHLHASPPCQPFSAWKRCFDQPLGYKDQGLELVKWTMQVIDRLQLASFTIEEVPDPHLQVLFDDWPSASASQTYYLH--RYGVPNTRCRLIVSSV 507
            MY+IDLF GAGGFS+GA QAG  V LAVD WQ ALD H  NH  C H R E+GG   +      +F+  ++  G +     H+HASPPCQ  S   R         D GL L ++ + V+  +   S+TIE+V  P ++ L DD       +  +LH  +YGVP+ R RLI SSV
Sbjct:    2 MYVIDLFSGAGGFSEGARQAGAVVILAVDCWQAALDVHAANHLDCHHWREEVGGHPAELAGRLRAFIGANVPAGQL----VHVHASPPCQRLSKANRSSRDT----DVGLRLTRFALDVVQAVGCHSWTIEQVSAPAVRKLMDD----RGVKYRHLHFDKYGVPSIRRRLIASSV 164
[Close]
BLAST of jgi.p|Trimin1|159476 vs. uniprot
Match: A0A836CCV2_9STRA (S-adenosyl-L-methionine-dependent methyltransferase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CCV2_9STRA)

HSP 1 Score: 120 bits (301), Expect = 3.700e-30
Identity = 68/165 (41.21%), Postives = 89/165 (53.94%), Query Frame = 1 
Query:    1 MYLIDLFCGAGGFSQGAVQAGCEVTLAVDSWQRALDAHELNHPGCRHVRMEMGGDMDDFVSFVEEHLTTGGIDMSQCHLHASPPCQPFSAWKRCFDQPLGYKDQGLELVKWTMQVIDRLQLASFTIEEVPDPHLQVLFDDWPSASASQTYYLHRYGVPNTRCRLI 495
            M++IDLFCGAGGFS GA Q G  V LAVD W+ ALD H  NHPG  H    +GG   +F   +   +        Q HLHASPPCQ  S      D+ +     GL LV W  +++D ++  S+T+E+VP+  L   F   P       Y +  +GVP TR R+I
Sbjct:    1 MHVIDLFCGAGGFSTGAAQEGAVVVLAVDGWRDALDVHAANHPGALHWCETLGGPPAEFAERLRGVIAEAVPPGEQVHLHASPPCQNLSQVNAGRDEGV-----GLALVAWCFELVDLVRPDSWTVEQVPNAALLRRFAHVPHG----VYDMAAHGVPQTRRRVI 156
[Close]
BLAST of jgi.p|Trimin1|159476 vs. uniprot
Match: A0A836CC81_9STRA (S-adenosyl-L-methionine-dependent methyltransferase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CC81_9STRA)

HSP 1 Score: 116 bits (291), Expect = 4.630e-29
Identity = 70/173 (40.46%), Postives = 92/173 (53.18%), Query Frame = 1 
Query:    1 MYLIDLFCGAGGFSQGAVQAGCEVTLAVDSWQRALDAHELNHPGCRHVRMEMG-GDMDDFVSFVEEHLTTGGIDMSQCHLHASPPCQPFSAWKRCFDQPLGYKDQGLELVKWTMQVIDRLQLASFTIEEVPDPHLQVLFDDWPSASASQTYYLH----RYGVPNTRCRLIVSS 504
            +++IDLFCGAGGFS+GA QAG  V LAVD W+ ALD H  NHP   H   E+G GD  +    +           +  HLHASPPCQ  S   R      G    GL L ++ + VI+  +  S+T+E+V  P ++ LFD      A    Y H    + GVP+ R RLI +S
Sbjct:    2 LHVIDLFCGAGGFSEGARQAGAVVVLAVDCWREALDVHAANHPDAEHWCEEIGTGDPAELAQRLRAFAANALPPGAPVHLHASPPCQSLSKANRASRDTSG----GLRLTRFALDVIEAARFDSWTVEQVSAPAVRGLFD------ARGVLYRHLACDKLGVPSIRRRLIAAS 164
[Close]
BLAST of jgi.p|Trimin1|159476 vs. uniprot
Match: A0A835Z7H2_9STRA (S-adenosyl-L-methionine-dependent methyltransferase (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z7H2_9STRA)

HSP 1 Score: 112 bits (279), Expect = 1.170e-28
Identity = 57/126 (45.24%), Postives = 75/126 (59.52%), Query Frame = 1 
Query:    7 LIDLFCGAGGFSQGAVQAGCEVTLAVDSWQRALDAHELNHPGCRHVRMEMGGDMDDFVSFVEEHLTTGGIDMSQCHLHASPPCQPFSAWKRCFDQPLGYKDQGLELVKWTMQVIDRLQLASFTIEE 384
            L+DLFCG GGFS+GA  AG EV LAVDSW+ ALD H   HP   H   E+GGD+ +F   V   +  G     + HLH SPPCQ  S+       P G +++G  LV W + V+D L+  S+T+E+
Sbjct:   11 LVDLFCGIGGFSEGARLAGAEVALAVDSWRAALDVHASRHPDAEHWCEELGGDVAEFARRVRAAVPVG----CRLHLHGSPPCQQLSSLN-----PGGDREEGARLVTWYLDVVDALRPDSWTMEQ 127
[Close]
BLAST of jgi.p|Trimin1|159476 vs. uniprot
Match: A0A836CEM3_9STRA (S-adenosyl-L-methionine-dependent methyltransferase n=2 Tax=Tribonema minus TaxID=303371 RepID=A0A836CEM3_9STRA)

HSP 1 Score: 115 bits (289), Expect = 2.970e-28
Identity = 65/165 (39.39%), Postives = 88/165 (53.33%), Query Frame = 1 
Query:    1 MYLIDLFCGAGGFSQGAVQAGCEVTLAVDSWQRALDAHELNHPGCRHVRMEMGGDMDDFVSFVEEHLTTGGIDMSQCHLHASPPCQPFSAWKRCFDQPLGYKDQGLELVKWTMQVIDRLQLASFTIEEVPDPHLQVLFDDWPSASASQTYYLHRYGVPNTRCRLI 495
            MY+ID+F G GGF+QGA QAG  V LAVDSW+ ALD H LNHP   H    +GGD   F   +              H+H SPPCQ  S      ++      +GL LV+W+ QV + L   SFT+E+V +P L   +   P     + Y +  +G+P TR R++
Sbjct:    1 MYVIDVFSGCGGFTQGAKQAGATVILAVDSWKEALDVHALNHPETEHWHEVVGGDPSLFAGRLRAVADLKVPSGEHLHVHFSPPCQQLSGVNHSRNEL-----KGLALVEWSFQVAELLCPDSFTVEQVRNPFLLRTYAHLPH----RIYKMCEHGIPQTRVRVL 156
The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|159476 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A836C756_9STRA2.030e-130100.00S-adenosyl-L-methionine-dependent methyltransferas... [more]
A0A835Z412_9STRA2.270e-5489.66S-adenosyl-L-methionine-dependent methyltransferas... [more]
A0A835ZAI0_9STRA5.100e-3241.32S-adenosyl-L-methionine-dependent methyltransferas... [more]
A0A835YWN5_9STRA5.270e-3242.01S-adenosyl-L-methionine-dependent methyltransferas... [more]
A0A836CNB4_9STRA2.030e-3140.00S-adenosyl-L-methionine-dependent methyltransferas... [more]
A0A835Z6C7_9STRA2.810e-3142.86S-adenosyl-L-methionine-dependent methyltransferas... [more]
A0A836CCV2_9STRA3.700e-3041.21S-adenosyl-L-methionine-dependent methyltransferas... [more]
A0A836CC81_9STRA4.630e-2940.46S-adenosyl-L-methionine-dependent methyltransferas... [more]
A0A835Z7H2_9STRA1.170e-2845.24S-adenosyl-L-methionine-dependent methyltransferas... [more]
A0A836CEM3_9STRA2.970e-2839.39S-adenosyl-L-methionine-dependent methyltransferas... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Contig_9contigContig_9:21332..21850 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Tribonema minus UTEX_B_31562021-06-17
Properties
Property NameValue
ProteomeIdTrimin1|159476|e_gw1.9.155.1
BRITEko00000,ko00001,ko00002,ko01000,ko02048,ko03032,ko03036
KEGG rclassRC00003,RC00332
KEGG ReactionR04858
KEGG ModuleM00035
KEGG Pathwayko00270,ko01100,ko05206,map00270,map01100,map05206
KEGG koko:K00558
EC2.1.1.37
DescriptionBelongs to the class I-like SAM-binding methyltransferase superfamily. C5-methyltransferase family
COG categoryH
Max annot lvl4751|Fungi
EggNOG OGsCOG0270@1|root,2SB19@2759|Eukaryota,3A8IC@33154|Opisthokonta,3Q4E3@4751|Fungi,3RMKM@4890|Ascomycota,21RSP@147550|Sordariomycetes,1F1UD@1028384|Glomerellales
Evalue1.01e-14
Seed ortholog5465.ENH86834
Hectar predicted targeting categoryother localisation
TranscriptId159798
TrackFilteredModels1
ProteinId159476
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|159476gene_3500Tribonema minus UTEX_B_3156 geneContig_9 21332..21850 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
exon_3500_1exon_3500_1Tribonema minus UTEX_B_3156 exonContig_9 21332..21850 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
CDS_3500CDS_3500Tribonema minus UTEX_B_3156 CDSContig_9 21332..21850 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|159476Trimin1|159476|e_gw1.9.155.1Tribonema minus UTEX_B_3156 polypeptideContig_9 21332..21850 -


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>mRNA_3500 ID=mRNA_3500|Name=jgi.p|Trimin1|159476|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=519bp|location=Sequence derived from alignment at Contig_9:21332..21850- (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon.  
ATGTACCTGATCGACTTGTTCTGTGGGGCTGGGGGCTTCTCTCAGGGCGC
GGTGCAAGCGGGTTGCGAGGTGACACTGGCGGTCGACAGCTGGCAGAGGG
CGCTCGATGCACATGAGCTGAACCACCCCGGATGCCGGCACGTGAGAATG
GAGATGGGGGGCGATATGGACGACTTCGTTTCGTTCGTGGAGGAGCACTT
GACCACTGGTGGCATCGACATGTCACAGTGTCACCTACACGCTAGTCCCC
CGTGCCAGCCGTTCTCTGCATGGAAGCGCTGTTTCGACCAGCCACTGGGA
TACAAGGACCAGGGACTAGAGCTGGTGAAGTGGACCATGCAGGTGATCGA
TAGATTGCAGCTGGCGTCGTTCACCATCGAGGAAGTCCCGGATCCCCATC
TACAGGTGCTGTTCGACGACTGGCCGAGCGCCTCCGCGTCCCAGACGTAC
TACTTGCACAGATACGGGGTCCCCAACACACGTTGCCGCCTGATCGTGAG
CAGCGTCCATTCGACCTGA
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protein sequence of jgi.p|Trimin1|159476

>Trimin1|159476|e_gw1.9.155.1 ID=Trimin1|159476|e_gw1.9.155.1|Name=jgi.p|Trimin1|159476|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=173bp
MYLIDLFCGAGGFSQGAVQAGCEVTLAVDSWQRALDAHELNHPGCRHVRM
EMGGDMDDFVSFVEEHLTTGGIDMSQCHLHASPPCQPFSAWKRCFDQPLG
YKDQGLELVKWTMQVIDRLQLASFTIEEVPDPHLQVLFDDWPSASASQTY
YLHRYGVPNTRCRLIVSSVHST*
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mRNA from alignment at Contig_9:21332..21850-

Legend: exonpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_3500 ID=mRNA_3500|Name=jgi.p|Trimin1|159476|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=519bp|location=Sequence derived from alignment at Contig_9:21332..21850- (Tribonema minus UTEX_B_3156 )
ATGTACCTGATCGACTTGTTCTGTGGGGCTGGGGGCTTCTCTCAGGGCGC
GGTGCAAGCGGGTTGCGAGGTGACACTGGCGGTCGACAGCTGGCAGAGGG
CGCTCGATGCACATGAGCTGAACCACCCCGGATGCCGGCACGTGAGAATG
GAGATGGGGGGCGATATGGACGACTTCGTTTCGTTCGTGGAGGAGCACTT
GACCACTGGTGGCATCGACATGTCACAGTGTCACCTACACGCTAGTCCCC
CGTGCCAGCCGTTCTCTGCATGGAAGCGCTGTTTCGACCAGCCACTGGGA
TACAAGGACCAGGGACTAGAGCTGGTGAAGTGGACCATGCAGGTGATCGA
TAGATTGCAGCTGGCGTCGTTCACCATCGAGGAAGTCCCGGATCCCCATC
TACAGGTGCTGTTCGACGACTGGCCGAGCGCCTCCGCGTCCCAGACGTAC
TACTTGCACAGATACGGGGTCCCCAACACACGTTGCCGCCTGATCGTGAG
CAGCGTCCATTCGACCTGA
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Coding sequence (CDS) from alignment at Contig_9:21332..21850-

>mRNA_3500 ID=mRNA_3500|Name=jgi.p|Trimin1|159476|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=519bp|location=Sequence derived from alignment at Contig_9:21332..21850- (Tribonema minus UTEX_B_3156 )
ATGTACCTGATCGACTTGTTCTGTGGGGCTGGGGGCTTCTCTCAGGGCGC
GGTGCAAGCGGGTTGCGAGGTGACACTGGCGGTCGACAGCTGGCAGAGGG
CGCTCGATGCACATGAGCTGAACCACCCCGGATGCCGGCACGTGAGAATG
GAGATGGGGGGCGATATGGACGACTTCGTTTCGTTCGTGGAGGAGCACTT
GACCACTGGTGGCATCGACATGTCACAGTGTCACCTACACGCTAGTCCCC
CGTGCCAGCCGTTCTCTGCATGGAAGCGCTGTTTCGACCAGCCACTGGGA
TACAAGGACCAGGGACTAGAGCTGGTGAAGTGGACCATGCAGGTGATCGA
TAGATTGCAGCTGGCGTCGTTCACCATCGAGGAAGTCCCGGATCCCCATC
TACAGGTGCTGTTCGACGACTGGCCGAGCGCCTCCGCGTCCCAGACGTAC
TACTTGCACAGATACGGGGTCCCCAACACACGTTGCCGCCTGATCGTGAG
CAGCGTCCATTCGACCTGA
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