mRNA_349 (mRNA) Tribonema minus UTEX_B_3156

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
Namejgi.p|Trimin1|157226
Unique NamemRNA_349
TypemRNA
OrganismTribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Homology
[Close]
BLAST of jgi.p|Trimin1|157226 vs. uniprot
Match: A0A835YX96_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YX96_9STRA)

HSP 1 Score: 660 bits (1703), Expect = 3.240e-239
Identity = 342/342 (100.00%), Postives = 342/342 (100.00%), Query Frame = 1 
Query:    1 MDLANVTASIRVDRATGLGSVIDVIRMVNPNQERTAATKAVAYLTADDETLRRSIQHVRINGKGKPTPCASARVLVEVVFLLPGKAARDFRRASATTVCRVLGGDLSIVGEVEARHHALQQTEGGRAAQEFLLRDDESSATGCGQVGQVRALPVELTLASQAERSAYFQAWSKRTNEEGDLILKRKRDEAALAAKKARAQFAVESYELLRTMGVADDRDRITFSDAVRRAVGDGGGDAEAVVEALAVGIDDPAVPTPECEPFYRGDEISMHTVASEMGVKIPHNSEGRIGKKMRALYRDRYGEAAAASIPKRSIEFRGQMFPANAYWKRDADLMRAAVQSVL 1026
            MDLANVTASIRVDRATGLGSVIDVIRMVNPNQERTAATKAVAYLTADDETLRRSIQHVRINGKGKPTPCASARVLVEVVFLLPGKAARDFRRASATTVCRVLGGDLSIVGEVEARHHALQQTEGGRAAQEFLLRDDESSATGCGQVGQVRALPVELTLASQAERSAYFQAWSKRTNEEGDLILKRKRDEAALAAKKARAQFAVESYELLRTMGVADDRDRITFSDAVRRAVGDGGGDAEAVVEALAVGIDDPAVPTPECEPFYRGDEISMHTVASEMGVKIPHNSEGRIGKKMRALYRDRYGEAAAASIPKRSIEFRGQMFPANAYWKRDADLMRAAVQSVL
Sbjct:    1 MDLANVTASIRVDRATGLGSVIDVIRMVNPNQERTAATKAVAYLTADDETLRRSIQHVRINGKGKPTPCASARVLVEVVFLLPGKAARDFRRASATTVCRVLGGDLSIVGEVEARHHALQQTEGGRAAQEFLLRDDESSATGCGQVGQVRALPVELTLASQAERSAYFQAWSKRTNEEGDLILKRKRDEAALAAKKARAQFAVESYELLRTMGVADDRDRITFSDAVRRAVGDGGGDAEAVVEALAVGIDDPAVPTPECEPFYRGDEISMHTVASEMGVKIPHNSEGRIGKKMRALYRDRYGEAAAASIPKRSIEFRGQMFPANAYWKRDADLMRAAVQSVL 342
[Close]
BLAST of jgi.p|Trimin1|157226 vs. uniprot
Match: A0A835Z3L4_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z3L4_9STRA)

HSP 1 Score: 397 bits (1020), Expect = 1.450e-135
Identity = 217/342 (63.45%), Postives = 254/342 (74.27%), Query Frame = 1 
Query:    1 MDLANVTASIRVDRATGLGSVIDVIRMVNPNQERTAATKAVAYLTADDETLRRSIQHVRINGKGKPTPCASARVLVEVVFLLPGKAARDFRRASATTVCRVLGGDLSIVGEVEARHHALQQTEGGRAAQEFLLRDDESSATGCGQVGQVRALPVELTLASQAERSAYFQAWSKRTNEEGDLILKRKRDEAALAAKKARAQFAVESYELLRTMGVADDRDRITFSDAVRRAVGDGGGDAEAVVEALAVGIDDPAVPTPECEPFYRGDEISMHTVASEMGVKIPHNSEGRIGKKMRALYRDRYGEAAAASIPKRSIEFRGQMFPANAYWKRDADLMRAAVQSVL 1026
            MDL +VTA+IRVD AT  GSVIDVI++V       A+T     L      L      +RIN KG+ TPCA A+ LVE+V+ LPGKAAR+FRR SA  VCRVLGGDLSIV EVEARHHALQQTEGGRAAQ+FLL D ESS  G      +  LP+EL LA++ ++SAYF+A              R R+EAA+A KKARAQFAVE YELLR+MG AD RD ITFSDAVRRAV DGGG   AVVEA A+  DDP +PTP+C+PFYRG+EISMHTVA EM VKIP   EGRIGK+M+ALY +RYG+AAAA+IP R+IEFRGQ++PAN+YW RDADLM+ AVQSVL
Sbjct:    1 MDLDDVTAAIRVDTATNKGSVIDVIKIVQSCNASDASTYCKRLLDDIGTDLGTRCVQLRINSKGRLTPCADAKTLVEIVWSLPGKAAREFRRQSAANVCRVLGGDLSIVQEVEARHHALQQTEGGRAAQKFLLEDSESSVGG----EMISGLPLELALANETQKSAYFEA--------------RMREEAAIATKKARAQFAVEGYELLRSMGAADHRDCITFSDAVRRAVTDGGG--AAVVEARALAADDPTIPTPQCDPFYRGEEISMHTVAHEMRVKIPEQGEGRIGKRMKALYTERYGDAAAANIPTRNIEFRGQIWPANSYWARDADLMKRAVQSVL 322
[Close]
BLAST of jgi.p|Trimin1|157226 vs. uniprot
Match: A0A835YWG0_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YWG0_9STRA)

HSP 1 Score: 337 bits (864), Expect = 8.260e-112
Identity = 187/341 (54.84%), Postives = 235/341 (68.91%), Query Frame = 1 
Query:    1 MDLANVTASIRVDRATGLGSVIDVIRMVNPNQERTAATKAVAYLTADDETLRRSIQHVRINGKGKPTPCASARVLVEVVFLLPGKAARDFRRASATTVCRVLGGDLSIVGEVEARHHALQQTEGGRAAQEFLLRDDESSATGCGQVGQVRALPVELTLASQAERSAYFQAWSKRTNEEGDLILKRKRDEAALAAKKARAQFAVESYELLRTMGVADDRDRITFSDAVRRAVGDGGGDAEAVVEALAVGIDDPAVPTPECEPFYRGDEISMHTVASEMGVKIPHNSEGRIGKKMRALYRDRYGEAAAASIPKRSIEFRGQMFPANAYWKRDADLMRAAVQSV 1023
            MDLANVTA+IRVD AT  GSVIDVI++V       A+T     L      +      +RINGKGK T CA A+ LVE+V+ LPGKAAR+FRR SA TVCRVLGGDLSIV EVEARHHALQ T GGRAAQ+FLL D+ S +    +         E TLA             +R N++ +L L R RD A++A KKA A+FAV+SYE+LR+MG ADDRDRITFSDAVRR V +GGG A A+VEA AV  DDP VPT +C+ +YRG+EISMH+V+S+  ++I +  EG +G+ ++ALY  RYGEAAAA + KR++ F GQ++  N YW RD DLM+ A+ +V
Sbjct:    1 MDLANVTAAIRVDTATNKGSVIDVIKIVQSCNASDASTYCKRLLDDVGTHIGTRCTQLRINGKGKLTFCADAKTLVEIVWSLPGKAAREFRRTSAKTVCRVLGGDLSIVREVEARHHALQSTGGGRAAQDFLLGDESSGSEAPAE---------ERTLARTIGEVM------RRNNKQAELDLSRMRDNASIATKKACAEFAVDSYEMLRSMGAADDRDRITFSDAVRRIVAEGGGAAGAIVEAGAVPADDPTVPTSDCDAYYRGEEISMHSVSSKYSLRIGNGREGAVGRAVKALYLKRYGEAAAAKMVKRNVPFHGQIYGENTYWARDEDLMKQAIVAV 326
[Close]
BLAST of jgi.p|Trimin1|157226 vs. uniprot
Match: A0A835Z1W0_9STRA (Uncharacterized protein n=8 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z1W0_9STRA)

HSP 1 Score: 289 bits (739), Expect = 6.540e-93
Identity = 163/340 (47.94%), Postives = 219/340 (64.41%), Query Frame = 1 
Query:    1 MDLANVTASIRVDRATGLGSVIDVIRMVNPNQERTAATKAVAYLTADDETLRRSIQHVRINGKGKPTPCASARVLVEVVFLLPGKAARDFRRASATTVCRVLGGDLSIVGEVEARHHALQQTEGGRAAQEFLLRDDESSATGCGQVGQVRALPVELTLASQAERSAYFQAWSKRTNEEGDLILKRKRDEAALAAKKARAQFAVESYELLRTMGVADDRDRITFSDAVRRAVGDGGGDAEAVVEALAVGIDDPAVPTPECEPFYRGDEISMHTVASEMGVKIPHNSEGRIGKKMRALYRDRYGEAAAASIPKRSIEFRGQMFPANAYWKRDADLMRAAVQS 1020
            M+LA++ A+IR+D A+G+GSV+DVIR+VNP      A+     L  +   +  S + +RING GK TPCA AR LVE+V+ LPGK AR FRR SATTVCRVLGGD+S+V E+E R  ALQ TE GRAAQ+FL+ D        G V   R LP EL LA+  +R+ +  +W    +E    ++ R++ +     K          ++LL + GVAD RDRI F D VRR V     DA A++ A  +  DDP+V TP  +  +RG EISMH+VA+EMGV+I   +E  IGKK++ALY  +YG AAAA+IPKR++ FRG++F  N YWKRD DLM  A+++
Sbjct:    1 MELADIPAAIRIDLASGMGSVLDVIRLVNPEIPSNQASSTFKRLALELPDVASSCRQLRINGNGKLTPCADARTLVEIVWSLPGKPARAFRRTSATTVCRVLGGDVSLVNEIEGRCRALQATEVGRAAQDFLIGD--------GSVQVSRELPAELQLATPEQRTLFVASWM---HERRLALIDREKTQQLALIK--------NGFDLLGSFGVADARDRIAFGDLVRRVVQPPAHDAGALIVARPMSEDDPSVATPLAQVAHRGPEISMHSVAAEMGVRIKAGTECLIGKKVKALYAIKYGTAAAAAIPKRNVPFRGKVFAENTYWKRDQDLMEEAIRT 321
[Close]
BLAST of jgi.p|Trimin1|157226 vs. uniprot
Match: A0A835ZAN0_9STRA (Uncharacterized protein n=2 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZAN0_9STRA)

HSP 1 Score: 254 bits (650), Expect = 2.530e-73
Identity = 154/341 (45.16%), Postives = 198/341 (58.06%), Query Frame = 1 
Query:    1 MDLANVTASIRVDRATGLGSVIDVIRMVNPNQERTAATKAVAYLTADDETLRRSIQHVRINGKGKPTPCASARVLVEVVFLLPGKAARDFRRASATTVCRVLGGDLSIVGEVEARHHALQQTEGGRAAQEFLLRDDESSATGCGQVGQVRALPVELTLASQAERSAYFQAWSKRTNEEGDLILKRKRDEAALAAKKARAQFAVESYELLRTMGVADDRDRITFSDAVRRAVGDGGGDAEAVVEALAVGIDDPAVPTPECEPFYRGDEISMHTVASEMGVKIPHNSEGRIGKKMRALYRDRYGEAAAASIPKRSIEFRGQMFPANAYWKRDADLMRAAVQSV 1023
            ++LA++ A+IR++ A+G+GSV+DVIR+VNP      A+     +  +   +  S   +RING GK TPCA AR LVE+V  LPGK AR FRR SATTVCRVLGGD+S+V E+E R  ALQ TE GRAAQ+FL+ D      G  QV   R LP EL LA+  +R+ +                                             GVAD RDRI F D VRR V     D  A++ A  +  DDP+V TP     +RG EISM +VA+EMGV+I   +E  IGKK++ALY  +YG AAAA+IPKR+I FRGQ+F  N YWKR+ D M  A+ +V
Sbjct:  133 LELADIPAAIRINLASGMGSVLDVIRLVNPEIPSNQASSTFKRVATELPDMASSCCQLRINGNGKLTPCADARTLVEIVGSLPGKPARAFRRTSATTVCRVLGGDVSLVDEIEGRCRALQATEMGRAAQDFLIGD------GSDQVS--RDLPAELQLATPEQRTFF---------------------------------------------GVADARDRIAFGDLVRRVVQPPAHDDGALIVARPMSEDDPSVATPSAHVAHRGPEISMQSVAAEMGVRIKAGTECLIGKKVKALYAIKYGTAAAAAIPKRNITFRGQIFAENTYWKRNQDHMEEAISTV 420
[Close]
BLAST of jgi.p|Trimin1|157226 vs. uniprot
Match: A0A835YN01_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YN01_9STRA)

HSP 1 Score: 195 bits (495), Expect = 2.120e-57
Identity = 128/341 (37.54%), Postives = 166/341 (48.68%), Query Frame = 1 
Query:    1 MDLANVTASIRVDRATGLGSVIDVIRMVNPNQERTAATKAVAYLTADDETLRRSIQHVRINGKGKPTPCASARVLVEVVFLLPGKAARDFRRASATTVCRVLGGDLSIVGEVEARHHALQQTEGGRAAQEFLLRDDESSATGCGQVGQVRALPVELTLASQAERSAYFQAWSKRTNEEGDLILKRKRDEAALAAKKARAQFAVESYELLRTMGVADDRDRITFSDAVRRAVGDGGGDAEAVVEALAVGIDDPAVPTPECEPFYRGDEISMHTVASEMGVKIPHNSEGRIGKKMRALYRDRYGEAAAASIPKRSIEFRGQMFPANAYWKRDADLMRAAVQSV 1023
            M+LA+  A+IR+D A+G+GSV+DVIR+VNP      A+     L  +   +  S + +RI G GK TPCA AR LVE+V+ LPGK AR FRR SATTVCRVLGGD+S+V E+E R  ALQ TE                                                    +++G LI+ R   E                                                            DDP+VPTP  +  ++G EISMH+VA+EMGV+I   +E  IGKK++ALY  +YG AAAA+IPKR+I FRGQ+F  N YWKRD DLM  A+ +V
Sbjct:    1 MELADTPAAIRIDLASGMGSVLDVIRLVNPEIPSNQASFTFKRLATELPDVASSCRQLRIYGNGKLTPCADARTLVEIVWSLPGKPARAFRRTSATTVCRVLGGDVSLVDEIEGRCRALQATEPP-------------------------------------------------AHDDGALIVARPMSE------------------------------------------------------------DDPSVPTPLAQVAHQGPEISMHSVAAEMGVRIKAGTECLIGKKVKALYAIKYGTAAAAAIPKRNIPFRGQIFAENTYWKRDQDLMEEAIHTV 232
[Close]
BLAST of jgi.p|Trimin1|157226 vs. uniprot
Match: A0A835YZ27_9STRA (Uncharacterized protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YZ27_9STRA)

HSP 1 Score: 179 bits (453), Expect = 1.990e-52
Identity = 94/142 (66.20%), Postives = 109/142 (76.76%), Query Frame = 1 
Query:    1 MDLANVTASIRVDRATGLGSVIDVIRMVNPNQERTAATKAVAYLTADDETLRRSIQHVRINGKGKPTPCASARVLVEVVFLLPGKAARDFRRASATTVCRVLGGDLSIVGEVEARHHALQQTEGGRAAQEFLLRDDESSATG 426
            M+L+N+TA+IRVD AT  GSVIDVIR+VNPN     A   +A LT D  TL  S  H+RIN KGKPTPCA A+ LVE+V+ LPGKAAR+FRR SA TVCRVLGGDLSIV E+E RHH LQQTEGGRAAQ F+L D + S+ G
Sbjct:    1 MELSNITAAIRVDTATNQGSVIDVIRLVNPNPTSGNAANVLANLTKD-VTLNYS--HLRINAKGKPTPCADAKTLVEIVWSLPGKAAREFRRTSAKTVCRVLGGDLSIVQEIEKRHHTLQQTEGGRAAQAFMLADSDDSSDG 139
[Close]
BLAST of jgi.p|Trimin1|157226 vs. uniprot
Match: B5LWM4_9PHYC (Uncharacterized protein n=1 Tax=Feldmannia species virus TaxID=39420 RepID=B5LWM4_9PHYC)

HSP 1 Score: 183 bits (465), Expect = 3.170e-51
Identity = 129/355 (36.34%), Postives = 181/355 (50.99%), Query Frame = 1 
Query:   22 ASIRVDRATGLGSVIDVIRMVNPNQERTAATKAVAYLTADDETLRRSIQHVRINGKGKPTPCASARVLVEVVFLLPGKAARDFRRASATTVCRVLGGDLSIVGEVEARHHALQQTEGGRAAQEFLLRDDESSATGCGQVGQVRALPVELTLASQAERSAYFQAWSKRTNEEGDLILKRKRDEAALAAKKARAQFAVESYEL----LRTMGVADDRDRITFSDAVR----RAVGDGGG------DAEAVVEALAVGIDDPA-------VPTPECEPFYRGDEISMHTVASEMGVKIPHNSEGRIGKKMRALYRDRYGEAAAASIPKRSIEFRGQMFPANAYWKRDADLMRAAVQSV 1023
            ++IRVD+ T LGSVID IRMV       A T ++  L      L      +++NG+GKPTP A A+ L+E+V+LLPG+ A  FR      +CR+LGGD S+V E+EARH  L  TE GRA QEF L D+  +     QV ++R+           E  ++F+          +   + KR  A+    KA     VE Y+     L ++G    RD I F D VR    RA+  G        D   V+ A+A  +DD         + TPEC    RG E S+   A+++G+ +     G IGK++   Y  RYG  A  +IPKR   +RG+ F  N YW RDADL++ A++ V
Sbjct:   28 STIRVDKNTKLGSVIDTIRMVLECDSSNANT-SLGRLVLSHPGLGEKYTQLKVNGRGKPTPVADAKTLIEIVWLLPGRRAHAFRCQRVGKICRLLGGDTSLVSEIEARHATLTGTEEGRATQEFFLNDNHVTIDQPDQVKELRS----------GEEPSWFK----------NATAEEKRAFASTMVNKAIVSEEVEMYDFCKAKLESVGQFTTRDMIEFGDRVRDAQRRALRAGNMMTSTPVDDTVVISAVARPVDDTIDSATGLPLATPECSESVRGVETSICNEAAKLGICVGEKG-GEIGKELIRRYTKRYGVEAGLNIPKRPTTYRGKPFNENCYWSRDADLVQEAIRIV 360
[Close]
BLAST of jgi.p|Trimin1|157226 vs. uniprot
Match: A0A6H5JW74_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JW74_9PHAE)

HSP 1 Score: 186 bits (472), Expect = 7.110e-49
Identity = 131/344 (38.08%), Postives = 184/344 (53.49%), Query Frame = 1 
Query:   22 ASIRVDRATGLGSVIDVIRMVNPNQERTAATKAVAYLTADDETLRRSIQHVRINGKGKPTPCASARVLVEVVFLLPGKAARDFRRASATTVCRVLGGDLSIVGEVEARHHALQQTEGGRAAQEFLLRD-DESSATGCGQVGQVRALPVELTLASQAERSAYFQAWSKRTNEEGDLILKRKRDEAALAAKKARAQFAVESYELLRTMGVADD-------RDRITFSDAVRRAVGDGGGDAEAVVEALAVGIDDPAVPTPECEPFYRGDEISMHTVASEMGVKIPHNSEGRIGKKMRALYRDRYGEAAAAS-IPKRSIEFRGQMFPANAYWKRDADLMRAAVQSVL 1026
            A+IRVD+   +GSVID IRMV       A T     + A++E   R  Q +RINGKGK TP A A+ L+E+V+LLPGK AR+FRR S+  VCR+LGGDLS+V E+EARH  LQ TE GRA QEFLL + +E+  T  G     R LPVE       +R+ + +   +   E   + LKRKR               V+SY  L+ +GV  D       RD +T        V +    A A+   L   + D   PT E     RG E  +  V+S++G+++P N  G +GK M+ +Y  +Y  A   S   +R   F G+    N Y++RD D++  A+++V+
Sbjct:  907 ATIRVDKNEQVGSVIDTIRMVLGGDSSAANTSLNRLILANEELGTRCTQ-LRINGKGKFTPVADAKTLIEIVWLLPGKKAREFRRQSSEKVCRLLGGDLSLVSEIEARHATLQSTEQGRATQEFLLGEREEAVETFDGMPAGFRYLPVE-------DRAQFAKQMLELNLEMSKVALKRKR-----------VDDMVQSYRALQDLGVLLDGRTLIELRDNVTILSRQDVMVNN----AVAIAAPL---LHDSTTPTHELGADQRGKETGIVVVSSKIGIRVPQNMSGTVGKMMKQMYIRKYELAPDFSGFARRQTLFNGRPILENLYFERDEDIIEEAIRAVM 1224
[Close]
BLAST of jgi.p|Trimin1|157226 vs. uniprot
Match: A0A835Z1M0_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z1M0_9STRA)

HSP 1 Score: 174 bits (441), Expect = 2.500e-48
Identity = 94/187 (50.27%), Postives = 123/187 (65.78%), Query Frame = 1 
Query:    1 MDLANVTASIRVDRATGLGSVIDVIRMVNPNQERTAATKAVAYLTADDETLRRSIQHVRINGKGKPTPCASARVLVEVVFLLPGKAARDFRRASATTVCRVLGGDLSIVGEVEARHHALQQTEGGRAAQEFLLRDDESSATGCGQVGQVRAL-PVELTLASQAERSAYFQAWSKRTNEEGDLILKRK 558
            MD+AN    IRVD AT +GSVIDVI ++NP +     T     LT   + L      +RINGKGK TPCA A+ LVEVV+ LPGKAARDFRR SA  VCRVLGGDL++  E+EARHHALQ ++ G+AAQ F+L D + S  G     +V++L P EL LA+  ++SAYF  W    N +  ++L+++
Sbjct:    1 MDIANFNTCIRVDNATQMGSVIDVINLINPYESNAPKT-----LTRLPQDLIAKCSQLRINGKGKLTPCADAQTLVEVVWSLPGKAARDFRRESAKAVCRVLGGDLTLADEIEARHHALQGSDEGQAAQAFMLADSDDSGDGFRTTKRVKSLLPDELQLATAEQQSAYFDGWMVDRNADRKMVLQKR 182
The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|157226 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A835YX96_9STRA3.240e-239100.00Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A835Z3L4_9STRA1.450e-13563.45Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A835YWG0_9STRA8.260e-11254.84Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A835Z1W0_9STRA6.540e-9347.94Uncharacterized protein n=8 Tax=Tribonema minus Ta... [more]
A0A835ZAN0_9STRA2.530e-7345.16Uncharacterized protein n=2 Tax=Tribonema minus Ta... [more]
A0A835YN01_9STRA2.120e-5737.54Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A835YZ27_9STRA1.990e-5266.20Uncharacterized protein (Fragment) n=1 Tax=Tribone... [more]
B5LWM4_9PHYC3.170e-5136.34Uncharacterized protein n=1 Tax=Feldmannia species... [more]
A0A6H5JW74_9PHAE7.110e-4938.08Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A835Z1M0_9STRA2.500e-4850.27Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Contig_3contigContig_3:976685..977713 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Tribonema minus UTEX_B_31562021-06-17
Properties
Property NameValue
ProteomeIdTrimin1|157226|e_gw1.3.402.1
Max annot lvl2880.D8LP49|-
EggNOG OGs2EUDG@1|root,2SWJG@2759|Eukaryota
Evalue1.73e-46
Seed ortholog2880.D8LP49
Hectar predicted targeting categoryother localisation
TranscriptId157548
TrackFilteredModels1
ProteinId157226
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|157226gene_349Tribonema minus UTEX_B_3156 geneContig_3 976685..977713 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
exon_349_1exon_349_1Tribonema minus UTEX_B_3156 exonContig_3 976685..977713 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
CDS_349CDS_349Tribonema minus UTEX_B_3156 CDSContig_3 976685..977713 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|157226Trimin1|157226|e_gw1.3.402.1Tribonema minus UTEX_B_3156 polypeptideContig_3 976685..977713 -


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>mRNA_349 ID=mRNA_349|Name=jgi.p|Trimin1|157226|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=1029bp|location=Sequence derived from alignment at Contig_3:976685..977713- (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon.  
ATGGACCTTGCCAACGTCACGGCGTCGATCCGCGTGGACCGTGCGACCGG
GCTTGGATCGGTCATAGATGTGATCCGCATGGTGAATCCTAACCAAGAGC
GAACAGCGGCGACCAAGGCCGTTGCATACCTGACTGCAGATGATGAAACC
CTGAGGAGGTCAATTCAGCACGTGCGGATCAACGGGAAAGGCAAACCCAC
GCCCTGTGCTTCGGCTCGAGTCTTGGTCGAGGTCGTGTTCTTGCTGCCCG
GAAAGGCCGCCCGCGACTTCAGGCGCGCGTCGGCCACGACGGTGTGCAGG
GTTCTCGGGGGCGACCTCTCGATCGTGGGAGAGGTGGAGGCGCGCCACCA
TGCGCTCCAGCAGACCGAGGGGGGCAGGGCGGCGCAGGAGTTCCTCTTGC
GAGACGACGAGAGCTCCGCCACTGGATGCGGGCAGGTGGGCCAGGTCCGC
GCTCTGCCGGTGGAGCTGACTCTGGCCAGCCAAGCGGAGAGGAGCGCTTA
CTTCCAGGCATGGAGCAAGCGGACCAACGAGGAGGGGGACCTGATTCTGA
AACGAAAGCGGGACGAGGCGGCCTTGGCCGCCAAGAAGGCGCGGGCGCAG
TTCGCAGTCGAGTCATATGAGCTGCTGCGGACGATGGGGGTAGCCGATGA
TCGCGACCGCATCACCTTCTCGGACGCAGTGAGGCGCGCCGTCGGTGATG
GCGGAGGAGATGCTGAAGCCGTGGTCGAAGCCCTGGCCGTGGGGATTGAC
GACCCCGCGGTCCCCACTCCCGAATGCGAGCCTTTCTACCGAGGCGACGA
GATCAGCATGCACACTGTGGCGAGCGAAATGGGGGTGAAGATTCCACACA
ACAGCGAGGGCCGCATTGGCAAGAAGATGAGGGCACTCTATCGGGACAGG
TACGGCGAGGCCGCCGCGGCGAGCATTCCGAAGCGCAGCATTGAGTTTCG
CGGCCAGATGTTTCCCGCCAACGCCTACTGGAAGCGCGATGCGGATCTCA
TGAGGGCCGCCGTGCAGAGCGTGCTTTGA
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protein sequence of jgi.p|Trimin1|157226

>Trimin1|157226|e_gw1.3.402.1 ID=Trimin1|157226|e_gw1.3.402.1|Name=jgi.p|Trimin1|157226|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=343bp
MDLANVTASIRVDRATGLGSVIDVIRMVNPNQERTAATKAVAYLTADDET
LRRSIQHVRINGKGKPTPCASARVLVEVVFLLPGKAARDFRRASATTVCR
VLGGDLSIVGEVEARHHALQQTEGGRAAQEFLLRDDESSATGCGQVGQVR
ALPVELTLASQAERSAYFQAWSKRTNEEGDLILKRKRDEAALAAKKARAQ
FAVESYELLRTMGVADDRDRITFSDAVRRAVGDGGGDAEAVVEALAVGID
DPAVPTPECEPFYRGDEISMHTVASEMGVKIPHNSEGRIGKKMRALYRDR
YGEAAAASIPKRSIEFRGQMFPANAYWKRDADLMRAAVQSVL*
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mRNA from alignment at Contig_3:976685..977713-

Legend: exonpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_349 ID=mRNA_349|Name=jgi.p|Trimin1|157226|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=1029bp|location=Sequence derived from alignment at Contig_3:976685..977713- (Tribonema minus UTEX_B_3156 )
ATGGACCTTGCCAACGTCACGGCGTCGATCCGCGTGGACCGTGCGACCGG
GCTTGGATCGGTCATAGATGTGATCCGCATGGTGAATCCTAACCAAGAGC
GAACAGCGGCGACCAAGGCCGTTGCATACCTGACTGCAGATGATGAAACC
CTGAGGAGGTCAATTCAGCACGTGCGGATCAACGGGAAAGGCAAACCCAC
GCCCTGTGCTTCGGCTCGAGTCTTGGTCGAGGTCGTGTTCTTGCTGCCCG
GAAAGGCCGCCCGCGACTTCAGGCGCGCGTCGGCCACGACGGTGTGCAGG
GTTCTCGGGGGCGACCTCTCGATCGTGGGAGAGGTGGAGGCGCGCCACCA
TGCGCTCCAGCAGACCGAGGGGGGCAGGGCGGCGCAGGAGTTCCTCTTGC
GAGACGACGAGAGCTCCGCCACTGGATGCGGGCAGGTGGGCCAGGTCCGC
GCTCTGCCGGTGGAGCTGACTCTGGCCAGCCAAGCGGAGAGGAGCGCTTA
CTTCCAGGCATGGAGCAAGCGGACCAACGAGGAGGGGGACCTGATTCTGA
AACGAAAGCGGGACGAGGCGGCCTTGGCCGCCAAGAAGGCGCGGGCGCAG
TTCGCAGTCGAGTCATATGAGCTGCTGCGGACGATGGGGGTAGCCGATGA
TCGCGACCGCATCACCTTCTCGGACGCAGTGAGGCGCGCCGTCGGTGATG
GCGGAGGAGATGCTGAAGCCGTGGTCGAAGCCCTGGCCGTGGGGATTGAC
GACCCCGCGGTCCCCACTCCCGAATGCGAGCCTTTCTACCGAGGCGACGA
GATCAGCATGCACACTGTGGCGAGCGAAATGGGGGTGAAGATTCCACACA
ACAGCGAGGGCCGCATTGGCAAGAAGATGAGGGCACTCTATCGGGACAGG
TACGGCGAGGCCGCCGCGGCGAGCATTCCGAAGCGCAGCATTGAGTTTCG
CGGCCAGATGTTTCCCGCCAACGCCTACTGGAAGCGCGATGCGGATCTCA
TGAGGGCCGCCGTGCAGAGCGTGCTTTGA
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Coding sequence (CDS) from alignment at Contig_3:976685..977713-

>mRNA_349 ID=mRNA_349|Name=jgi.p|Trimin1|157226|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=1029bp|location=Sequence derived from alignment at Contig_3:976685..977713- (Tribonema minus UTEX_B_3156 )
ATGGACCTTGCCAACGTCACGGCGTCGATCCGCGTGGACCGTGCGACCGG
GCTTGGATCGGTCATAGATGTGATCCGCATGGTGAATCCTAACCAAGAGC
GAACAGCGGCGACCAAGGCCGTTGCATACCTGACTGCAGATGATGAAACC
CTGAGGAGGTCAATTCAGCACGTGCGGATCAACGGGAAAGGCAAACCCAC
GCCCTGTGCTTCGGCTCGAGTCTTGGTCGAGGTCGTGTTCTTGCTGCCCG
GAAAGGCCGCCCGCGACTTCAGGCGCGCGTCGGCCACGACGGTGTGCAGG
GTTCTCGGGGGCGACCTCTCGATCGTGGGAGAGGTGGAGGCGCGCCACCA
TGCGCTCCAGCAGACCGAGGGGGGCAGGGCGGCGCAGGAGTTCCTCTTGC
GAGACGACGAGAGCTCCGCCACTGGATGCGGGCAGGTGGGCCAGGTCCGC
GCTCTGCCGGTGGAGCTGACTCTGGCCAGCCAAGCGGAGAGGAGCGCTTA
CTTCCAGGCATGGAGCAAGCGGACCAACGAGGAGGGGGACCTGATTCTGA
AACGAAAGCGGGACGAGGCGGCCTTGGCCGCCAAGAAGGCGCGGGCGCAG
TTCGCAGTCGAGTCATATGAGCTGCTGCGGACGATGGGGGTAGCCGATGA
TCGCGACCGCATCACCTTCTCGGACGCAGTGAGGCGCGCCGTCGGTGATG
GCGGAGGAGATGCTGAAGCCGTGGTCGAAGCCCTGGCCGTGGGGATTGAC
GACCCCGCGGTCCCCACTCCCGAATGCGAGCCTTTCTACCGAGGCGACGA
GATCAGCATGCACACTGTGGCGAGCGAAATGGGGGTGAAGATTCCACACA
ACAGCGAGGGCCGCATTGGCAAGAAGATGAGGGCACTCTATCGGGACAGG
TACGGCGAGGCCGCCGCGGCGAGCATTCCGAAGCGCAGCATTGAGTTTCG
CGGCCAGATGTTTCCCGCCAACGCCTACTGGAAGCGCGATGCGGATCTCA
TGAGGGCCGCCGTGCAGAGCGTGCTTTGA
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