mRNA_3468 (mRNA) Tribonema minus UTEX_B_3156

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	jgi.p\|Trimin1\|347975
Unique Name	mRNA_3468
Type	mRNA
Organism	Tribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )

Homology

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BLAST of jgi.p|Trimin1|347975 vs. uniprot
Match: A0A835Z6Q7_9STRA (SAC3/GANP/Nin1/mts3/eIF-3 p25 family-domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z6Q7_9STRA)

HSP 1 Score: 867 bits (2239), Expect = 0.000e+0
Identity = 447/447 (100.00%), Postives = 447/447 (100.00%), Query Frame = 1

Query:   58 MAEHGLLGFLREDSEAATKLAMAAMTAGKKRAKAQGAVALPKKPTKVGKPSFELTDQETEQLRQRNMQRFRDHMQGGLHSADAQAPPARAALPAAGGVVVDRSGGNVGDAQQRVRGTSAALEKSYLRLTAAPDPRTVRPPQQLAKCLQAAGRIMRGPKPAPPEAVQREPALSAGDHTRHCSQHLYPFFLAVDSVKSLPAAPPRPAGAGARGAAVVHSSARHADRRGSRLRKHVKDEWIRAEDYAWCCDQLKAIRQDLMVQGVRSQLTADVYCHHMRMALEYGDMNEFNQCQSALQALRAEGMAMPPAMQDEFDGYLLLYLLHFQDPHKLAQTLRGLSPQQRAGPIVAFAIATWRAVTAGNYHAYFRLYADAPAMAPYLLDYRLNPMREAAYARIVAGYGGALPLAFVSGELAFASEAECRAFAQRHGAVFRDDGSIDVRATRAAARR 1398
            MAEHGLLGFLREDSEAATKLAMAAMTAGKKRAKAQGAVALPKKPTKVGKPSFELTDQETEQLRQRNMQRFRDHMQGGLHSADAQAPPARAALPAAGGVVVDRSGGNVGDAQQRVRGTSAALEKSYLRLTAAPDPRTVRPPQQLAKCLQAAGRIMRGPKPAPPEAVQREPALSAGDHTRHCSQHLYPFFLAVDSVKSLPAAPPRPAGAGARGAAVVHSSARHADRRGSRLRKHVKDEWIRAEDYAWCCDQLKAIRQDLMVQGVRSQLTADVYCHHMRMALEYGDMNEFNQCQSALQALRAEGMAMPPAMQDEFDGYLLLYLLHFQDPHKLAQTLRGLSPQQRAGPIVAFAIATWRAVTAGNYHAYFRLYADAPAMAPYLLDYRLNPMREAAYARIVAGYGGALPLAFVSGELAFASEAECRAFAQRHGAVFRDDGSIDVRATRAAARR
Sbjct:    1 MAEHGLLGFLREDSEAATKLAMAAMTAGKKRAKAQGAVALPKKPTKVGKPSFELTDQETEQLRQRNMQRFRDHMQGGLHSADAQAPPARAALPAAGGVVVDRSGGNVGDAQQRVRGTSAALEKSYLRLTAAPDPRTVRPPQQLAKCLQAAGRIMRGPKPAPPEAVQREPALSAGDHTRHCSQHLYPFFLAVDSVKSLPAAPPRPAGAGARGAAVVHSSARHADRRGSRLRKHVKDEWIRAEDYAWCCDQLKAIRQDLMVQGVRSQLTADVYCHHMRMALEYGDMNEFNQCQSALQALRAEGMAMPPAMQDEFDGYLLLYLLHFQDPHKLAQTLRGLSPQQRAGPIVAFAIATWRAVTAGNYHAYFRLYADAPAMAPYLLDYRLNPMREAAYARIVAGYGGALPLAFVSGELAFASEAECRAFAQRHGAVFRDDGSIDVRATRAAARR 447

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BLAST of jgi.p|Trimin1|347975 vs. uniprot
Match: D7FPS9_ECTSI (PCI domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FPS9_ECTSI)

HSP 1 Score: 171 bits (432), Expect = 1.980e-45
Identity = 141/432 (32.64%), Postives = 195/432 (45.14%), Query Frame = 1

Query:  139 GKKRAKA-QGAVALPKKPTKVGKPSFELTDQETEQLRQ-RNMQRFRDHMQGGLHSADAQAPPARAALPAAGGVVVDRSGGNVGDAQQRVRGTSAALEKSYLRLTAAPDPRTVRPPQQLAKCLQAAGRIMRGPKPAPPEAVQREPALSAGDHTRHCSQHLYPFFLAVDSVKSLPAAPPRPAGAGARGAAVVHSSARHADRRGSRLRKHVKDEWIRAEDYAWCCDQLKAIRQDLMVQGVRSQLTADVYCHHMRMALEYGDMNEFNQCQSALQALRAEGMAMPPAMQDEFDGYLLLYLLHFQDPHKLAQTLRGLSPQQRAGPIVAFAIATWRAVTAGNYHAYFRLYADAPAMAPYLLDYRLNPMREAAYARIVAGYGGALPLAFVSGELAFAS----------EAECRAFAQRHGAVFRDDGSIDVRATRAAARR 1398
            GKK++KA +   A   KP         +   ET++ R+ RN  RF +H+ GG +S    +   R+      G     SG N  D    VRG+S++LEKSY RLT+AP P  VRPP+ L + L                                                                                   +HVK +W   EDY + CDQLKAIRQDL VQ +   LT DVY  H R+ALE GDM E+NQCQS L+ L   G+  P    DEF GY L+Y L+ ++  ++  T+  LS + R G  VA A+   ++   G+Y  +FRLY  APAM+ YL+D+ +  MR  A   +V  Y   +PL+F+  +L F S          + E    A + G    ++ +IDV+ATRAA  R
Sbjct:    6 GKKKSKATRWGKAAKAKPAAAAGGRGGIVGMETDEARKIRNAARFAEHLGGGSNSKQQGSGKKRSRWAMGNG-----SGSNSTDP---VRGSSSSLEKSYFRLTSAPKPSDVRPPEILTRSL-----------------------------------------------------------------------------------RHVKRKWATEEDYEFVCDQLKAIRQDLTVQAIEDGLTVDVYQTHGRIALESGDMEEYNQCQSRLKELHLSGV--PGVSMDEFTGYRLIYSLYRENHREVNATMMDLSQEARQGEGVAHALGVVKSYHMGDYCTFFRLYFAAPAMSSYLMDFLVMRMRRRAIKTMVKAYLPTIPLSFIQEQLRFDSRDSLLEFIDKDVEAALAAPKAG----EEAAIDVKATRAAWAR 340

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BLAST of jgi.p|Trimin1|347975 vs. uniprot
Match: UPI00106D6615 (leukocyte receptor cluster member 8 homolog n=1 Tax=Dendronephthya gigantea TaxID=151771 RepID=UPI00106D6615)

HSP 1 Score: 163 bits (412), Expect = 6.470e-40
Identity = 87/212 (41.04%), Postives = 130/212 (61.32%), Query Frame = 1

Query:  754 VKDEWIRAEDYAWCCDQLKAIRQDLMVQGVRSQLTADVYCHHMRMALEYGDMNEFNQCQSALQALRAEGMAMPPAMQDEFDGYLLLYLLHFQDPHKLAQTLRGLSPQQRAGPIVAFAIATWRAVTAGNYHAYFRLYADAPAMAPYLLDYRLNPMREAAYARIVAGYGGALPLAFVSGELAFASEAECRAFAQRHGAVFRDDGS-IDVRATRA 1386
            VKD+W   +DY + C+QLKAIRQDL VQG+R+  T  +Y  H R+ALE GD  EFNQCQS L++L + G+      ++EF  Y +LYL++ +D  +L  T+  L+ +++  P +  A+    A +  NYH++F+LY+ AP M  YLLD  +   RE A   ++  Y   LP+AFV  ELAFA EA C+ F +  G +   D + +D + ++A
Sbjct:  543 VKDDWRTKQDYRYACEQLKAIRQDLTVQGIRNDFTVLIYETHARLALEKGDSAEFNQCQSQLKSLYSGGLC---GHRNEFTAYRILYLIYTKDTRELTMTMSALTAEEKDEPFIKHALKMRSAWSLSNYHSFFQLYSSAPNMGGYLLDLFVQRERERAIKMLIKSYRPLLPVAFVQSELAFADEATCQEFLKGLGLILNADNTKLDCKLSQA 751

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BLAST of jgi.p|Trimin1|347975 vs. uniprot
Match: A0A455AF89_PHYMC (leukocyte receptor cluster member 8 n=1 Tax=Physeter macrocephalus TaxID=9755 RepID=A0A455AF89_PHYMC)

HSP 1 Score: 161 bits (408), Expect = 1.070e-39
Identity = 90/209 (43.06%), Postives = 128/209 (61.24%), Query Frame = 1

Query:  754 VKDEWIRAEDYAWCCDQLKAIRQDLMVQGVRSQLTADVYCHHMRMALEYGDMNEFNQCQSALQALRAEGMAMPPAMQDEFDGYLLLYLLHFQDPHKLAQTLRGLSPQQRAGPIVAFAIATWRAVTAGNYHAYFRLYADAPAMAPYLLDYRLNPMREAAYARIVAGYGGALPLAFVSGELAFASEAECRAFAQRHGAVFR--DDGSIDVR 1374
            VK  W   +DYA+ C+QLK+IRQDL VQGVR++ T +VY  H R+ALE GD  EFNQCQ+ L++L AE +   P    EF  Y +LY +  ++   +   L  L+ + +A P VA A+A   A   GNYH +FRLY+ AP M+ YL+D   +  R+AA   ++  +  ALP++++  ELAF  EA CRAF +  G  +   D+ S+D R
Sbjct:  443 VKSHWKEQQDYAFACEQLKSIRQDLTVQGVRTEFTVEVYETHARIALEKGDHEEFNQCQTQLKSLYAENL---PGNVGEFTAYRILYYIFTKNSGDITTELAYLTRELKADPCVAHALALRAAWALGNYHRFFRLYSHAPCMSGYLVDKFADRERKAALKAMIKTFRPALPVSYLQAELAFEGEAACRAFLEPLGLAYTGPDNSSVDCR 648

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BLAST of jgi.p|Trimin1|347975 vs. uniprot
Match: A0A3Q0EEK6_CARSF (leukocyte receptor cluster member 8 n=2 Tax=Eutheria TaxID=9347 RepID=A0A3Q0EEK6_CARSF)

HSP 1 Score: 162 bits (409), Expect = 1.960e-39
Identity = 91/209 (43.54%), Postives = 127/209 (60.77%), Query Frame = 1

Query:  754 VKDEWIRAEDYAWCCDQLKAIRQDLMVQGVRSQLTADVYCHHMRMALEYGDMNEFNQCQSALQALRAEGMAMPPAMQDEFDGYLLLYLLHFQDPHKLAQTLRGLSPQQRAGPIVAFAIATWRAVTAGNYHAYFRLYADAPAMAPYLLDYRLNPMREAAYARIVAGYGGALPLAFVSGELAFASEAECRAFAQRHGAVFR--DDGSIDVR 1374
            VK  W   +DYA+ C+Q+K+IRQDL VQGVR++ T +VY  H R+ALE GD  EFNQCQ+ L++L AE +   P    EF  Y +LY +  ++   +   L  L+ + +A P VA A+A   A   GNYH +FRLY  AP M+ YL+D   +  R+AA   ++  +  ALP+++V  ELAF  EA CRAF +  G  +   D+ SID R
Sbjct:  585 VKSHWKEKQDYAFACEQMKSIRQDLTVQGVRTEFTVEVYETHARIALEKGDHEEFNQCQTQLKSLYAENL---PGNVGEFTAYRILYYIFTKNSGDITTELAYLTRELKADPCVAHALALRAAWALGNYHRFFRLYCHAPCMSGYLVDKFADRERKAALRAMIKTFRPALPVSYVQAELAFEGEAACRAFLEPLGLAYTGSDNSSIDCR 790

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BLAST of jgi.p|Trimin1|347975 vs. uniprot
Match: A0A2U3X1H9_ODORO (leukocyte receptor cluster member 8 n=1 Tax=Odobenus rosmarus divergens TaxID=9708 RepID=A0A2U3X1H9_ODORO)

HSP 1 Score: 162 bits (409), Expect = 1.990e-39
Identity = 91/209 (43.54%), Postives = 127/209 (60.77%), Query Frame = 1

Query:  754 VKDEWIRAEDYAWCCDQLKAIRQDLMVQGVRSQLTADVYCHHMRMALEYGDMNEFNQCQSALQALRAEGMAMPPAMQDEFDGYLLLYLLHFQDPHKLAQTLRGLSPQQRAGPIVAFAIATWRAVTAGNYHAYFRLYADAPAMAPYLLDYRLNPMREAAYARIVAGYGGALPLAFVSGELAFASEAECRAFAQRHGAVFR--DDGSIDVR 1374
            VK  W   +DYA+ C+Q+K+IRQDL VQGVR++ T +VY  H R+ALE GD  EFNQCQ+ L++L AE +   P    EF  Y +LY +  ++   +   L  L+ + +A P VA A+A   A   GNYH +FRLY  AP M+ YL+D   +  R+AA   ++  +  ALP++F+  ELAF  EA CRAF +  G  +   D+ SID R
Sbjct:  588 VKSHWKEKQDYAFACEQMKSIRQDLTVQGVRTEFTVEVYETHARIALEKGDHEEFNQCQTQLKSLYAENL---PGNVGEFTAYRILYYIFTKNSGDITTELAYLTRELKADPCVAHALALRAAWALGNYHRFFRLYCHAPCMSGYLVDKFADRERKAALKAMIKTFRPALPVSFLQAELAFEGEAACRAFLEPLGLAYTGPDNASIDCR 793

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BLAST of jgi.p|Trimin1|347975 vs. uniprot
Match: A0A384A291_BALAS (leukocyte receptor cluster member 8 n=1 Tax=Balaenoptera acutorostrata scammoni TaxID=310752 RepID=A0A384A291_BALAS)

HSP 1 Score: 160 bits (406), Expect = 2.020e-39
Identity = 89/209 (42.58%), Postives = 128/209 (61.24%), Query Frame = 1

Query:  754 VKDEWIRAEDYAWCCDQLKAIRQDLMVQGVRSQLTADVYCHHMRMALEYGDMNEFNQCQSALQALRAEGMAMPPAMQDEFDGYLLLYLLHFQDPHKLAQTLRGLSPQQRAGPIVAFAIATWRAVTAGNYHAYFRLYADAPAMAPYLLDYRLNPMREAAYARIVAGYGGALPLAFVSGELAFASEAECRAFAQRHGAVFR--DDGSIDVR 1374
            VK  W   +DYA+ C+Q+K+IRQDL VQGVR++ T +VY  H R+ALE GD  EFNQCQ+ L++L AE +   P    EF  Y +LY +  ++   +   L  L+ + +A P VA A+A   A   GNYH +FRLY+ AP M+ YL+D   +  R+AA   ++  +  ALP++++  ELAF  EA CRAF +  G  +   D+ S+D R
Sbjct:  444 VKSHWKEKQDYAFACEQMKSIRQDLTVQGVRTEFTVEVYETHARIALEKGDHEEFNQCQTQLKSLYAENL---PGNVGEFTAYRILYYIFTKNSGDITTELAYLTRELKADPCVAHALALRAAWALGNYHRFFRLYSHAPCMSGYLVDKFADRERKAALKAMIKTFRPALPVSYLQAELAFEGEAACRAFLEPLGLAYTGPDNSSVDCR 649

[Close]

BLAST of jgi.p|Trimin1|347975 vs. uniprot
Match: A0A8C5XW71_MICMU (Leukocyte receptor cluster member 8 n=1 Tax=Microcebus murinus TaxID=30608 RepID=A0A8C5XW71_MICMU)

HSP 1 Score: 161 bits (407), Expect = 2.790e-39
Identity = 90/209 (43.06%), Postives = 127/209 (60.77%), Query Frame = 1

Query:  754 VKDEWIRAEDYAWCCDQLKAIRQDLMVQGVRSQLTADVYCHHMRMALEYGDMNEFNQCQSALQALRAEGMAMPPAMQDEFDGYLLLYLLHFQDPHKLAQTLRGLSPQQRAGPIVAFAIATWRAVTAGNYHAYFRLYADAPAMAPYLLDYRLNPMREAAYARIVAGYGGALPLAFVSGELAFASEAECRAFAQRHGAVFR--DDGSIDVR 1374
            VK  W   +DYA+ C+Q+K+IRQDL VQGVR++ T +VY  H R+ALE GD  EFNQCQ+ L++L AE +   P    EF  Y +LY +  ++   +   L  L+ + +A P VA A+A   A   GNYH +FRLY  AP M+ YL+D   +  R+AA   ++  +  ALP++++  ELAF  EA CRAF +  G  +   D+ SID R
Sbjct:  531 VKSHWKEKQDYAFACEQMKSIRQDLTVQGVRTEFTVEVYETHARIALEKGDHEEFNQCQTQLKSLYAENL---PGNVGEFTAYRILYFIFTKNSGDITTELAYLTRELKADPCVAHALALRAAWALGNYHRFFRLYCHAPCMSGYLVDKFADRERKAALKAMIKTFRPALPVSYLQAELAFEGEAACRAFLEPLGLAYTGPDNSSIDCR 736

[Close]

BLAST of jgi.p|Trimin1|347975 vs. uniprot
Match: L5M414_MYODS (Leukocyte receptor cluster member 8 like protein n=1 Tax=Myotis davidii TaxID=225400 RepID=L5M414_MYODS)

HSP 1 Score: 160 bits (405), Expect = 2.840e-39
Identity = 89/209 (42.58%), Postives = 128/209 (61.24%), Query Frame = 1

Query:  754 VKDEWIRAEDYAWCCDQLKAIRQDLMVQGVRSQLTADVYCHHMRMALEYGDMNEFNQCQSALQALRAEGMAMPPAMQDEFDGYLLLYLLHFQDPHKLAQTLRGLSPQQRAGPIVAFAIATWRAVTAGNYHAYFRLYADAPAMAPYLLDYRLNPMREAAYARIVAGYGGALPLAFVSGELAFASEAECRAFAQRHGAVFR--DDGSIDVR 1374
            VK +W   +DYA+ C+Q+K+IRQDL VQGVR++ T +VY  H R+ALE GD  EFNQCQ+ L++L AE +   P    EF  Y +LY +   +   +   L  L+ + +  P VA A+A   A   GNYH +FRLY+ AP M+ YL+D  ++  R+AA   ++  +  ALP++++  ELAF  EA CRAF +  G  +   D+ SID R
Sbjct:  447 VKSQWKEKQDYAFACEQMKSIRQDLTVQGVRTEFTVEVYETHARIALEKGDHEEFNQCQTQLKSLYAESL---PGNVGEFTAYRILYYIFTNNSGDITTELAYLTRELKTDPCVAHALALRAAWALGNYHRFFRLYSHAPCMSGYLIDKFVDRERKAALKAMIKTFRPALPVSYLQAELAFEGEAACRAFLEPLGLAYTGPDNTSIDCR 652

[Close]

BLAST of jgi.p|Trimin1|347975 vs. uniprot
Match: UPI0014427ABF (leukocyte receptor cluster member 8 isoform X3 n=1 Tax=Orcinus orca TaxID=9733 RepID=UPI0014427ABF)

HSP 1 Score: 160 bits (406), Expect = 3.010e-39
Identity = 89/209 (42.58%), Postives = 128/209 (61.24%), Query Frame = 1

Query:  754 VKDEWIRAEDYAWCCDQLKAIRQDLMVQGVRSQLTADVYCHHMRMALEYGDMNEFNQCQSALQALRAEGMAMPPAMQDEFDGYLLLYLLHFQDPHKLAQTLRGLSPQQRAGPIVAFAIATWRAVTAGNYHAYFRLYADAPAMAPYLLDYRLNPMREAAYARIVAGYGGALPLAFVSGELAFASEAECRAFAQRHGAVFR--DDGSIDVR 1374
            VK  W   +DYA+ C+Q+K+IRQDL VQGVR++ T +VY  H R+ALE GD  EFNQCQ+ L++L AE +   P    EF  Y +LY +  ++   +   L  L+ + +A P VA A+A   A   GNYH +FRLY+ AP M+ YL+D   +  R+AA   ++  +  ALP++++  ELAF  EA CRAF +  G  +   D+ S+D R
Sbjct:  494 VKSHWKEKQDYAFACEQMKSIRQDLTVQGVRTEFTVEVYETHARIALEKGDHEEFNQCQTQLKSLYAENL---PGNVGEFTAYRILYYIFTKNSGDITTELAYLTRELKADPCVAHALALRAAWALGNYHRFFRLYSHAPCMSGYLVDKFADRERKAALKAMIKTFRPALPVSYLQAELAFEGEAACRAFLEPLGLAYTGPDNSSVDCR 699

The following BLAST results are available for this feature:

BLAST of jgi.p|Trimin1|347975 vs. uniprot

BLAST of jgi.p|Trimin1|347975 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25


Match Name	E-value	Identity	Description
A0A835Z6Q7_9STRA	0.000e+0	100.00	SAC3/GANP/Nin1/mts3/eIF-3 p25 family-domain-contai...	[more]
D7FPS9_ECTSI	1.980e-45	32.64	PCI domain-containing protein n=2 Tax=Ectocarpus T...	[more]
UPI00106D6615	6.470e-40	41.04	leukocyte receptor cluster member 8 homolog n=1 Ta...	[more]
A0A455AF89_PHYMC	1.070e-39	43.06	leukocyte receptor cluster member 8 n=1 Tax=Physet...	[more]
A0A3Q0EEK6_CARSF	1.960e-39	43.54	leukocyte receptor cluster member 8 n=2 Tax=Euther...	[more]
A0A2U3X1H9_ODORO	1.990e-39	43.54	leukocyte receptor cluster member 8 n=1 Tax=Odoben...	[more]
A0A384A291_BALAS	2.020e-39	42.58	leukocyte receptor cluster member 8 n=1 Tax=Balaen...	[more]
A0A8C5XW71_MICMU	2.790e-39	43.06	Leukocyte receptor cluster member 8 n=1 Tax=Microc...	[more]
L5M414_MYODS	2.840e-39	42.58	Leukocyte receptor cluster member 8 like protein n...	[more]
UPI0014427ABF	3.010e-39	42.58	leukocyte receptor cluster member 8 isoform X3 n=1...	[more]

Pages

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
Contig_17	contig	Contig_17:1174562..1179248 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Diamond blastx: OGS1.0 vs UniRef90	2022-09-19
OGS1.0 of Tribonema minus UTEX_B_3156	2021-06-17

Properties


Property Name	Value
ProteomeId	Trimin1\|347975\|estExt_Genemark1.C_Ctg_170155
BRITE	ko00000,ko00001,ko00002,ko04131
KEGG Module	M00412
KEGG Pathway	ko04144,ko04217,map04144,map04217
KEGG ko	ko:K12196
Description	transcription, DNA-templated
COG category	M
Max annot lvl	2759\|Eukaryota
EggNOG OGs	KOG1861@1\|root,KOG1861@2759\|Eukaryota
Evalue	2.14e-46
Seed ortholog	2880.D7FPS9
Hectar predicted targeting category	other localisation
Ec32 ortholog description	SAC3/GANP/Nin1/mts3/eIF-3 p25
Ec32 ortholog	Ec-18_001590.1
TranscriptId	348297
Track	FilteredModels1
ProteinId	347975

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
jgi.p\|Trimin1\|347975	gene_3468	Tribonema minus UTEX_B_3156	gene	Contig_17 1174562..1179248 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
jgi.p\|Trimin1\|347975	Trimin1\|347975\|estExt_Genemark1.C_Ctg_170155	Tribonema minus UTEX_B_3156	polypeptide	Contig_17 1174619..1179248 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
exon_3468_1	exon_3468_1	Tribonema minus UTEX_B_3156	exon	Contig_17 1174562..1174770 +
exon_3468_2	exon_3468_2	Tribonema minus UTEX_B_3156	exon	Contig_17 1175256..1175342 +
exon_3468_3	exon_3468_3	Tribonema minus UTEX_B_3156	exon	Contig_17 1176081..1176284 +
exon_3468_4	exon_3468_4	Tribonema minus UTEX_B_3156	exon	Contig_17 1176695..1176943 +
exon_3468_5	exon_3468_5	Tribonema minus UTEX_B_3156	exon	Contig_17 1177227..1177366 +
exon_3468_6	exon_3468_6	Tribonema minus UTEX_B_3156	exon	Contig_17 1178195..1178352 +
exon_3468_7	exon_3468_7	Tribonema minus UTEX_B_3156	exon	Contig_17 1178895..1179248 +

The following five_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
UTR5_3468	UTR5_3468	Tribonema minus UTEX_B_3156	five_prime_UTR	Contig_17 1174562..1174618 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
CDS_3468	CDS_3468	Tribonema minus UTEX_B_3156	CDS	Contig_17 1174619..1174770 +

Sequences

The following sequences are available for this feature:

mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at Contig_17:1174562..1179248+
coding sequence from alignment at Contig_17:1174562..1179248+

spliced messenger RNA

>mRNA_3468 ID=mRNA_3468|Name=jgi.p|Trimin1|347975|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=1401bp|location=Sequence derived from alignment at Contig_17:1174562..1179248+ (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon.  
TCTGTATAGGCTGAAGGCGGGAGAGCGCGCGTGCAGGTAAGTGTTGAAAG
TTCGGAAATGGCGGAGCATGGGCTGCTGGGGTTCCTCAGGGAGGACTCGG
AGGCAGCAACGAAGTTGGCGATGGCGGCGATGACGGCTGGCAAGAAGCGT
GCGAAGGCGCAGGGTGCTGTGGCGCTTCCGAAAAAGCCTACCAAGGTCGG
CAAGCCCAGCTTTGAGCTGACAGACCAAGAGACGGAGCAGCTGCGGCAGC
GGAACATGCAGCGATTCAGGGACCATATGCAGGGAGGATTGCACAGCGCC
GACGCGCAGGCCCCCCCGGCGCGCGCCGCGCTGCCGGCCGCCGGCGGCGT
CGTCGTGGACAGGAGCGGCGGCAACGTCGGCGATGCTCAGCAGCGCGTCC
GCGGCACCAGCGCGGCGCTGGAGAAGTCGTACCTGCGCCTGACGGCGGCG
CCGGACCCGCGCACCGTGAGGCCGCCGCAGCAGCTCGCCAAGTGTCTGCA
AGCGGCGGGCCGCATCATGCGCGGCCCGAAGCCAGCGCCGCCGGAAGCAG
TTCAACGAGAGCCTGCGTTGAGCGCTGGCGACCACACGCGACACTGCTCA
CAGCACCTCTACCCATTCTTTCTCGCTGTAGACAGCGTTAAGTCGCTGCC
CGCCGCTCCCCCACGGCCTGCCGGCGCCGGCGCGCGCGGCGCTGCGGTCG
TACACAGCTCTGCGCGACATGCAGACCGCCGCGGCTCACGGTTGCGAAAG
CACGTCAAGGACGAGTGGATCCGCGCGGAGGACTACGCGTGGTGCTGCGA
CCAGCTCAAGGCGATACGCCAGGACCTCATGGTGCAGGGCGTGCGCAGCC
AGCTCACCGCGGACGTGTACTGCCACCACATGCGCATGGCCCTCGAGTAC
GGCGACATGAATGAGTTCAACCAGTGCCAGTCCGCGCTGCAGGCGCTGCG
CGCGGAGGGCATGGCCATGCCGCCAGCCATGCAGGACGAGTTCGACGGCT
ACCTGCTGCTGTACCTGCTGCACTTCCAAGACCCGCACAAGCTCGCGCAA
ACGCTGCGCGGCCTGTCGCCGCAGCAGCGCGCCGGCCCCATCGTCGCCTT
CGCGATCGCCACGTGGCGCGCCGTCACCGCCGGCAACTACCACGCGTACT
TCCGCCTCTACGCGGACGCGCCGGCGATGGCGCCGTACCTCCTCGACTAC
CGCCTCAACCCGATGCGCGAGGCCGCGTACGCGCGCATCGTCGCGGGCTA
CGGCGGCGCGCTGCCGCTCGCCTTCGTTTCCGGCGAGCTCGCGTTCGCGT
CGGAGGCGGAGTGCCGCGCATTCGCGCAGCGCCACGGCGCCGTGTTCAGG
GACGACGGCAGCATCGACGTGCGCGCGACGCGCGCTGCTGCGCGGCGGTG
A

protein sequence of jgi.p|Trimin1|347975

>Trimin1|347975|estExt_Genemark1.C_Ctg_170155 ID=Trimin1|347975|estExt_Genemark1.C_Ctg_170155|Name=jgi.p|Trimin1|347975|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=448bp
MAEHGLLGFLREDSEAATKLAMAAMTAGKKRAKAQGAVALPKKPTKVGKP
SFELTDQETEQLRQRNMQRFRDHMQGGLHSADAQAPPARAALPAAGGVVV
DRSGGNVGDAQQRVRGTSAALEKSYLRLTAAPDPRTVRPPQQLAKCLQAA
GRIMRGPKPAPPEAVQREPALSAGDHTRHCSQHLYPFFLAVDSVKSLPAA
PPRPAGAGARGAAVVHSSARHADRRGSRLRKHVKDEWIRAEDYAWCCDQL
KAIRQDLMVQGVRSQLTADVYCHHMRMALEYGDMNEFNQCQSALQALRAE
GMAMPPAMQDEFDGYLLLYLLHFQDPHKLAQTLRGLSPQQRAGPIVAFAI
ATWRAVTAGNYHAYFRLYADAPAMAPYLLDYRLNPMREAAYARIVAGYGG
ALPLAFVSGELAFASEAECRAFAQRHGAVFRDDGSIDVRATRAAARR*

mRNA from alignment at Contig_17:1174562..1179248+

Legend: exonfive_prime_UTRpolypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_3468 ID=mRNA_3468|Name=jgi.p|Trimin1|347975|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=4687bp|location=Sequence derived from alignment at Contig_17:1174562..1179248+ (Tribonema minus UTEX_B_3156 )
TCTGTATAGGCTGAAGGCGGGAGAGCGCGCGTGCAGGTAAGTGTTGAAAG
TTCGGAAATGGCGGAGCATGGGCTGCTGGGGTTCCTCAGGGAGGACTCGG
AGGCAGCAACGAAGTTGGCGATGGCGGCGATGACGGCTGGCAAGAAGCGT
GCGAAGGCGCAGGGTGCTGTGGCGCTTCCGAAAAAGCCTACCAAGGTCGG
CAAGCCCAGGTAACTATCTCGCAGCAACAGGGAGTAATTAGGAGATCACG
CACGAGCTGCGCTTATGTCTGGAGGCTGGCGGCAAAACAGCAAACGCGGC
AGCGCGTGCGTTGTAAGCAGCAAGCGCACTAAGGTGCTCATGTGTTTCTA
TCTGTTTTTGTGTTTGCTGCACTCAGCTGTTTTGTGTTTGCTGCAACTCA
GCTGTAACCTGTGCCAAGCAACAGAGAGTCTTTCGATCGAAGCCAATGTA
GTGCCCGTATGATGCTGACTGTGACAGTGCCGTCCCTCATTCATGCAGTC
AGAGCAGACACTGATCAGATCTCCCTCATTCATGTTGTCGTTGAAGGCGG
CGCATGCCTTGCAGGCGAGGTCTTTGTCTCATCACCTATTGTGAGAGGCT
CAAGCTGACGATGAACCAGGCACGCAATTGATGTGAGCGAACTCCTCACT
GGCGCGAAGCCCTACTTCTGATCAGTGTCTTGCTCGCCTTGCAGCTTTGA
GCTGACAGACCAAGAGACGGAGCAGCTGCGGCAGCGGAACATGCAGCGAT
TCAGGGACCATATGCAGGGAGGATTGCACAGGTACGGGCTGGGTGTTCAC
ACTTCGTGGGCAGAGACTTCGCGCCACGAGCGGTGTGACCCTTTTTCTCT
CATGATCGTCAACAACGCGCAAGCCGTCCAGCAGGTCTGCGAATGCCTGA
TGGCCTTCGTTTCTCAGTGCTCTGCCTACAACTGAGTGTTTAATCTGGTT
TACTGTGCGGGGATTCTGCAACGCGGCACCAAGTTTGACTGCAAGTGGCA
TACGCTACCGACCTGCAATACAAAACATTGGATCATGGCCGGGGGACCAC
GGCCGCAGCTTGAAGTTCAAGCACAATTGCCCAACAGCTGGAGGAGTCAA
GTCTGGACACCACTGACTGACGGCCGGAATGCTTCAATTTGACTAGTACC
TCATAGGTATTCCACATGGCAACAGGCCTTGCCGTATGTGCAGACCTCTA
GCCACTTCTCACCATGTCCAGCACCGAGGAGGAAGCTCACTGCCAAACCA
AGTACCATCTTAACGGCCTTCTGGGATTGAATTGGCAAGTGTACGCTATC
TCTTCATTGCGTGCCTCGCATTGCAGTGATGAGACCGACCATTGCAGAGC
CGCTGCCGAAGCACCAGCATCCATGAATGCAAAACAGCGCACAAAACAAA
ACGCACTCTTCCGGAGCATTGTCGTCCCGCGGCGCATACCTCACATCGCG
CCTTTTCACAGCACCACACCAAGATGCTCACTCCCCCGTGCCTCGCCGCC
GCTGCCTCAAAACCCGCAGCGCCGACGCGCAGGCCCCCCCGGCGCGCGCC
GCGCTGCCGGCCGCCGGCGGCGTCGTCGTGGACAGGAGCGGCGGCAACGT
CGGCGATGCTCAGCAGCGCGTCCGCGGCACCAGCGCGGCGCTGGAGAAGT
CGTACCTGCGCCTGACGGCGGCGCCGGACCCGCGCACCGTGAGGCCGCCG
CAGCAGCTCGCCAAGTGTCTGCAGTGAGTGGCCGCGTTACGGCGACTGCG
CAGTACGAAAGTGCTTGACGCAGCATAACGAGCGGCGTTTTGGCGCGCAC
GCGTGCAGCACCGGCAGGTCATCTGTAGCAGTAAGCGGACTGGCGCACGC
GCCTCCGCGTCTGGAGCGCGCGCGCTGACCGTTGGTTTTCACAACTGCCA
GCTGCGGTGGGGATGTAGCGCTGGTCAGCTGATGCACGCGGTCTGCGTTT
CACAGTTGCGTTGTCACGCCATCAGGACAGTCGGAGGTTCACCTGCGGTG
CGTGCGTGTCGCGCCAGCATGGGTGTTGGTCGCCGCGCGCAGTTAGCGCC
AGCGCATGGGCCCTATGTTTCCAGCGAGTGCGACAGGCGGCAGGGCAGCT
GCTGCTTTTGCCCGCCGCTCTGCTGCGGTGCAGAGCGGCGGGCCGCATCA
TGCGCGGCCCGAAGCCAGCGCCGCCGGAAGCAGTTCAACGAGAGCCTGCG
TTGAGCGCTGGCGACCACACGCGACACTGCTCACAGCACCTCTACCCATT
CTTTCTCGCTGTAGACAGCGTTAAGTCGCTGCCCGCCGCTCCCCCACGGC
CTGCCGGCGCCGGCGCGCGCGGCGCTGCGGTCGTACACAGCTCTGCGCGA
CATGCAGACCGCCGCGGCTCACGGTTGCGAAAGTACGCGCGGCGCTGCTG
ACGTCGTGGCTGATCTCTGTCTGCAGCACGCGGCTCATGTCGCGCAAGGA
ATAGGACGGATGTCCCCGCCCATTGCATCCACCACACGCCTGCCCCGCGT
TTGTCGGTGACCGTATGCATGCAAAAGCTGACCAGATGCACGCAAAACAC
TCGCACGCGCGCAGTGCCACGACCGCTGTCCGCGACGGCACGATACAGAC
ACACTTAGGCTTGACACCCCCCACGCCTCGCTCCGCTCTACTCGTACATG
GGTTCTCGCGTGCAGGCACGTCAAGGACGAGTGGATCCGCGCGGAGGACT
ACGCGTGGTGCTGCGACCAGCTCAAGGCGATACGCCAGGACCTCATGGTG
CAGGGCGTGCGCAGCCAGCTCACCGCGGACGTGTACTGCCACCACATGCG
CATGGGTGAGTGTGCGGCGATGGCAGCGCTCAGGCTTGTGTGCACTGTGG
CAGCGCTCGACGGCGGGTGCACGGCGCGCATGTACTGCCACCGTACGTTG
CATGAGCGAGCGAGTGGCGCGGATGCTGAGGGCGTGAGCACCGTGGGAGG
GCTCAGCAGCAACAACATGCACGTGTTCGTCATGGAGCGCTGCTGCTATT
GGGCTCCGCGCGGGCTCAAGCGCGTGCGTGGAGAGTGGTGGGGGGGGGGG
CATCAGGAGAGGCTGTACGGGAATGCACACGTGACATGTGGCACGCTACC
GTTGACGCATCGCCATGTGCGCAGGCCTGAGCATGCGGTTTTGTGCAGGC
GATGCTGATCGCAGCTTTGTTCATGTGTACCTTGAAGTACGTGGCAGCCT
TGCCGCACTCTGCAGCGTGATCCTGCAGCGTCGCTCAGTTCACCAGGTGG
CTAGACAGTGTCACAGAGCCCTGCGGTGTGCACTGCACGTAATGCGCACC
GAGAGCTTGCTGCGATATAGACACATAGTGGTGAGTGACAGTAGCTGGTC
AAAGCGCCGTCAAAGCGCGGCCATCTAACAGTGCCCTCGTTGTGGTCGTC
ATGCAAAGCGCCACAGACAACTTCAATTGGTGGCTGTCCTGCGCCTGCGG
CAGCCGCGCGCGCGAGGGCGAGGGCTCGGGCTCGCCATGCGTTTGTCTGT
AACCTGCCTGAACTCGCGAGCGCGTTGTGTATGCTGACACGTGATACCAA
AATTGCCTTTGCTGCCATCTGCGATCTGACACATTAGCTCTGCCGCTCGC
GCTGCCGCCGCCGCCGCTGCCGCCGCCGCGCAGCCCTCGAGTACGGCGAC
ATGAATGAGTTCAACCAGTGCCAGTCCGCGCTGCAGGCGCTGCGCGCGGA
GGGCATGGCCATGCCGCCAGCCATGCAGGACGAGTTCGACGGCTACCTGC
TGCTGTACCTGCTGCACTTCCAAGACCCGCACAAGCTCGCGGTGAGGACG
TGCGCCGCCATGTTTCCTCTTGATCATGTCACTTCAACCTTGTCATGTCG
ACTTTCGTTTGAACGCGTCCGCTTCGACCGCAGCGCCTGACACCTGCGCT
GGACGGTGTTGCGCGCGCCGATCGCTCTGCCCATTTCTGGTAGCGTCGTG
CAGCCACGGCCCTCGAGGGTTAGGGTTAGAGTGTCAGGCGCAGGCAGGCT
TTGTGGCCACGCACAGCGCGACGGCCAGGCTGGCGAACCTCGCTATCCTC
ACGTGACCGGCGCACGCACACATCACTGCCACTCGAGTGTCGTGCCTCCA
CCGCCGGTCACACGTTCGACTGTCGCAGTCACTAGGATCTGACGCGGCAC
CTGCTGCAGCACTGAGGGGCGGCGGTGCGCGCGGCCGCCGCGCGCGCCCC
ATTGTCTCCGCCATTACGGCACAGCACGCACCGTAGTGCATGTCTACAGG
CAGGCGATCTGCAGCTCGCAATCGGTCTCACACAACTGCGCCCCCCCCTC
CCCCCCACCCCACCCCACTCCTCTCCACGCCAGCAAACGCTGCGCGGCCT
GTCGCCGCAGCAGCGCGCCGGCCCCATCGTCGCCTTCGCGATCGCCACGT
GGCGCGCCGTCACCGCCGGCAACTACCACGCGTACTTCCGCCTCTACGCG
GACGCGCCGGCGATGGCGCCGTACCTCCTCGACTACCGCCTCAACCCGAT
GCGCGAGGCCGCGTACGCGCGCATCGTCGCGGGCTACGGCGGCGCGCTGC
CGCTCGCCTTCGTTTCCGGCGAGCTCGCGTTCGCGTCGGAGGCGGAGTGC
CGCGCATTCGCGCAGCGCCACGGCGCCGTGTTCAGGGACGACGGCAGCAT
CGACGTGCGCGCGACGCGCGCTGCTGCGCGGCGGTGA

Coding sequence (CDS) from alignment at Contig_17:1174562..1179248+

>mRNA_3468 ID=mRNA_3468|Name=jgi.p|Trimin1|347975|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=1344bp|location=Sequence derived from alignment at Contig_17:1174562..1179248+ (Tribonema minus UTEX_B_3156 )
ATGGCGGAGCATGGGCTGCTGGGGTTCCTCAGGGAGGACTCGGAGGCAGC
AACGAAGTTGGCGATGGCGGCGATGACGGCTGGCAAGAAGCGTGCGAAGG
CGCAGGGTGCTGTGGCGCTTCCGAAAAAGCCTACCAAGGTCGGCAAGCCC
AGCTTTGAGCTGACAGACCAAGAGACGGAGCAGCTGCGGCAGCGGAACAT
GCAGCGATTCAGGGACCATATGCAGGGAGGATTGCACAGCGCCGACGCGC
AGGCCCCCCCGGCGCGCGCCGCGCTGCCGGCCGCCGGCGGCGTCGTCGTG
GACAGGAGCGGCGGCAACGTCGGCGATGCTCAGCAGCGCGTCCGCGGCAC
CAGCGCGGCGCTGGAGAAGTCGTACCTGCGCCTGACGGCGGCGCCGGACC
CGCGCACCGTGAGGCCGCCGCAGCAGCTCGCCAAGTGTCTGCAAGCGGCG
GGCCGCATCATGCGCGGCCCGAAGCCAGCGCCGCCGGAAGCAGTTCAACG
AGAGCCTGCGTTGAGCGCTGGCGACCACACGCGACACTGCTCACAGCACC
TCTACCCATTCTTTCTCGCTGTAGACAGCGTTAAGTCGCTGCCCGCCGCT
CCCCCACGGCCTGCCGGCGCCGGCGCGCGCGGCGCTGCGGTCGTACACAG
CTCTGCGCGACATGCAGACCGCCGCGGCTCACGGTTGCGAAAGCACGTCA
AGGACGAGTGGATCCGCGCGGAGGACTACGCGTGGTGCTGCGACCAGCTC
AAGGCGATACGCCAGGACCTCATGGTGCAGGGCGTGCGCAGCCAGCTCAC
CGCGGACGTGTACTGCCACCACATGCGCATGGCCCTCGAGTACGGCGACA
TGAATGAGTTCAACCAGTGCCAGTCCGCGCTGCAGGCGCTGCGCGCGGAG
GGCATGGCCATGCCGCCAGCCATGCAGGACGAGTTCGACGGCTACCTGCT
GCTGTACCTGCTGCACTTCCAAGACCCGCACAAGCTCGCGCAAACGCTGC
GCGGCCTGTCGCCGCAGCAGCGCGCCGGCCCCATCGTCGCCTTCGCGATC
GCCACGTGGCGCGCCGTCACCGCCGGCAACTACCACGCGTACTTCCGCCT
CTACGCGGACGCGCCGGCGATGGCGCCGTACCTCCTCGACTACCGCCTCA
ACCCGATGCGCGAGGCCGCGTACGCGCGCATCGTCGCGGGCTACGGCGGC
GCGCTGCCGCTCGCCTTCGTTTCCGGCGAGCTCGCGTTCGCGTCGGAGGC
GGAGTGCCGCGCATTCGCGCAGCGCCACGGCGCCGTGTTCAGGGACGACG
GCAGCATCGACGTGCGCGCGACGCGCGCTGCTGCGCGGCGGTGA