mRNA_3439 (mRNA) Tribonema minus UTEX_B_3156

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
Namejgi.p|Trimin1|347958
Unique NamemRNA_3439
TypemRNA
OrganismTribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Homology
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BLAST of jgi.p|Trimin1|347958 vs. uniprot
Match: A0A835Z5I7_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z5I7_9STRA)

HSP 1 Score: 449 bits (1154), Expect = 5.840e-158
Identity = 268/268 (100.00%), Postives = 268/268 (100.00%), Query Frame = 1 
Query:    1 MRRVIAALVFAFVGDKCANAFTPAAPNGPAGNNRHIAASSTAQATPTHQLSSWASSIENIASRLDAIIWGGRTGTTSDAAAIAATATPHAVDEEVLRRRGIRHSIVEKRRRSLELEAELQSLLRIAGGKPSKMELNEVHRLSGELEALQAAXXXXXXXXXEAGVHIGNAARAGGGAWRLLFAETARSGSSASGVLXXXXXXXXXXXXXXXXAIGSCAVVTYASQNLRIERGTNGELRVFRRLLAAPECACADGAEQCCSSGEQWFWPL 804
            MRRVIAALVFAFVGDKCANAFTPAAPNGPAGNNRHIAASSTAQATPTHQLSSWASSIENIASRLDAIIWGGRTGTTSDAAAIAATATPHAVDEEVLRRRGIRHSIVEKRRRSLELEAELQSLLRIAGGKPSKMELNEVHRLSGELEALQAAXXXXXXXXXEAGVHIGNAARAGGGAWRLLFAETARSGSSASGVLXXXXXXXXXXXXXXXXAIGSCAVVTYASQNLRIERGTNGELRVFRRLLAAPECACADGAEQCCSSGEQWFWPL
Sbjct:    1 MRRVIAALVFAFVGDKCANAFTPAAPNGPAGNNRHIAASSTAQATPTHQLSSWASSIENIASRLDAIIWGGRTGTTSDAAAIAATATPHAVDEEVLRRRGIRHSIVEKRRRSLELEAELQSLLRIAGGKPSKMELNEVHRLSGELEALQAAXXXXXXXXXEAGVHIGNAARAGGGAWRLLFAETARSGSSASGVLXXXXXXXXXXXXXXXXAIGSCAVVTYASQNLRIERGTNGELRVFRRLLAAPECACADGAEQCCSSGEQWFWPL 268
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BLAST of jgi.p|Trimin1|347958 vs. uniprot
Match: A0A835YZX8_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YZX8_9STRA)

HSP 1 Score: 126 bits (316), Expect = 3.260e-31
Identity = 100/226 (44.25%), Postives = 119/226 (52.65%), Query Frame = 1 
Query:  157 WASSIENIASRLDAIIWGGRTGTTSDAAAIAATATPHAVDEEVLRRRGIRHSIVEKRRRSLELEAELQSLLRIAGGKPSKMELNEVHRLSGELEALQAAXXXXXXXXXEAGV----HIGNAARAGGGAWRLLFAETARSGSSASGVLXXXXXXXXXXXXXXXXAI-GSCAVVTYASQNLRIERGTNGELRVFRR-----LLAAPECACADGAEQCCSSGEQWFWPL 804
            W+ S+E +A+RLD  IWG       +AAA A   T  A+DEE+LRRR IR ++VE RRR L LEAEL SLLRIAG +PS+ EL  +HR + ELEA+ AA XXXXXXXX          G     GGGAW  L+AE    G+    +L                A  G+   VTY SQNLRI RG  GEL V+RR                         EQWFWPL
Sbjct:   50 WSESLEAVAARLDDFIWGRHWS--DNAAATADDGTAQALDEELLRRRSIRGAVVETRRRCLALEAELTSLLRIAGARPSRTELGAIHRAAAELEAVAAAEXXXXXXXXXXXXXXSPRAGPTTGGGGGAWAALYAEDGVGGARGGRLLLRALGGGGGLAGDVAAAERGAADRVTYVSQNLRIARGPCGELSVYRRSAXXXXXXXXXXXXXXXXXXXXXEAEQWFWPL 273
The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|347958 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A835Z5I7_9STRA5.840e-158100.00Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A835YZX8_9STRA3.260e-3144.25Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Contig_17contigContig_17:967774..969305 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Tribonema minus UTEX_B_31562021-06-17
Properties
Property NameValue
ProteomeIdTrimin1|347958|estExt_Genemark1.C_Ctg_170127
Hectar predicted targeting categorychloroplast
TranscriptId348280
TrackFilteredModels1
ProteinId347958
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|347958gene_3439Tribonema minus UTEX_B_3156 geneContig_17 967774..969305 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
exon_3439_3exon_3439_3Tribonema minus UTEX_B_3156 exonContig_17 967774..968093 -
exon_3439_2exon_3439_2Tribonema minus UTEX_B_3156 exonContig_17 968375..968665 -
exon_3439_1exon_3439_1Tribonema minus UTEX_B_3156 exonContig_17 969098..969305 -


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
UTR3_3439UTR3_3439Tribonema minus UTEX_B_3156 three_prime_UTRContig_17 967774..967785 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
CDS_3439CDS_3439Tribonema minus UTEX_B_3156 CDSContig_17 969098..969305 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|347958Trimin1|347958|estExt_Genemark1.C_Ctg_170127Tribonema minus UTEX_B_3156 polypeptideContig_17 967786..969305 -


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>mRNA_3439 ID=mRNA_3439|Name=jgi.p|Trimin1|347958|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=819bp|location=Sequence derived from alignment at Contig_17:967774..969305- (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon.  
ATGCGCCGTGTTATAGCCGCTCTGGTATTCGCGTTCGTGGGAGACAAGTG
CGCCAACGCCTTCACGCCGGCGGCACCAAATGGCCCTGCCGGCAACAACA
GACATATCGCTGCCAGCTCCACGGCCCAAGCGACACCCACGCACCAGCTC
TCTTCTTGGGCCTCCAGCATCGAGAACATCGCGTCCAGGCTTGATGCGAT
AATCTGGGGCGGACGCACCGGAACGACGTCCGACGCCGCGGCCATCGCCG
CCACCGCCACGCCGCATGCCGTCGACGAGGAAGTCCTGCGACGCCGCGGC
ATCCGCCACTCCATCGTCGAGAAGCGCCGCCGCTCCCTCGAGCTCGAGGC
CGAACTTCAATCCCTGCTGCGCATCGCCGGCGGCAAGCCCTCCAAGATGG
AGCTCAACGAGGTGCACCGCCTGAGCGGCGAGCTTGAAGCGCTGCAGGCG
GCGGAGGCGGCGGCGGCGGCGGCCGCAGCAGAGGCAGGCGTGCACATTGG
CAACGCGGCGCGCGCCGGCGGCGGAGCGTGGCGCCTGCTGTTTGCGGAGA
CCGCGCGCAGCGGCTCCAGCGCCAGCGGCGTGCTGCTGCGCCGCGTGCTG
CGCCGCAGCGGCGCCGCCGCCGCCGCTGCTGCCGCCATCGGCAGCTGCGC
GGTCGTCACGTATGCGTCGCAGAACCTGCGCATCGAGCGCGGCACGAACG
GCGAGCTGCGCGTCTTCCGCCGCCTGCTCGCGGCGCCCGAGTGCGCGTGC
GCTGACGGCGCCGAGCAGTGCTGCAGCAGCGGCGAGCAGTGGTTCTGGCC
CCTGTAAGGGGGGGGGGGG
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protein sequence of jgi.p|Trimin1|347958

>Trimin1|347958|estExt_Genemark1.C_Ctg_170127 ID=Trimin1|347958|estExt_Genemark1.C_Ctg_170127|Name=jgi.p|Trimin1|347958|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=269bp
MRRVIAALVFAFVGDKCANAFTPAAPNGPAGNNRHIAASSTAQATPTHQL
SSWASSIENIASRLDAIIWGGRTGTTSDAAAIAATATPHAVDEEVLRRRG
IRHSIVEKRRRSLELEAELQSLLRIAGGKPSKMELNEVHRLSGELEALQA
AEAAAAAAAAEAGVHIGNAARAGGGAWRLLFAETARSGSSASGVLLRRVL
RRSGAAAAAAAAIGSCAVVTYASQNLRIERGTNGELRVFRRLLAAPECAC
ADGAEQCCSSGEQWFWPL*
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mRNA from alignment at Contig_17:967774..969305-

Legend: polypeptideexonCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_3439 ID=mRNA_3439|Name=jgi.p|Trimin1|347958|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=1532bp|location=Sequence derived from alignment at Contig_17:967774..969305- (Tribonema minus UTEX_B_3156 )
ATGCGCCGTGTTATAGCCGCTCTGGTATTCGCGTTCGTGGGAGACAAGTG
CGCCAACGCCTTCACGCCGGCGGCACCAAATGGCCCTGCCGGCAACAACA
GACATATCGCTGCCAGCTCCACGGCCCAAGCGACACCCACGCACCAGCTC
TCTTCTTGGGCCTCCAGCATCGAGAACATCGCGTCCAGGCTTGATGCGAT
AATCTGGGGTAAGCTGTGCGGAGGAAGCTTTTTGACCTGATCGACCTCGC
CATCAAAACACATTTTCATAAGCCCGTGGCAGCTTCCTTCCGGAAAGTCA
AGCAGAGTGACCAGAGTCTGTTTTCACGTCACCTGCAGTTTTCATCCGCA
AAGGAGTCAGCCGAAAATCAAACTTTGCATTTCTTCTGCAAGGCATGGAT
GGAACAAGATCCTAGTTCAGTCGATCACGCACCAAACCTTGTGAATGCTT
GTTTTGATTTCCACTTTTTTTTTTCAGCTGGCTGGTTCGCCAAAAATCAG
GGCCTTTCAATGCCCTCAAAGCCACTTTTTTGTTGGCTCGTCCAAATTTT
ACCTCTCCTGCCTCTCCTGCTGCCCCCCCCACCAGACTGATTAATACCCA
CACCGTTGCCTCCCTCTCTGCGCTCGGCGTGCCAACGCAGGCGGACGCAC
CGGAACGACGTCCGACGCCGCGGCCATCGCCGCCACCGCCACGCCGCATG
CCGTCGACGAGGAAGTCCTGCGACGCCGCGGCATCCGCCACTCCATCGTC
GAGAAGCGCCGCCGCTCCCTCGAGCTCGAGGCCGAACTTCAATCCCTGCT
GCGCATCGCCGGCGGCAAGCCCTCCAAGATGGAGCTCAACGAGGTGCACC
GCCTGAGCGGCGAGCTTGAAGCGCTGCAGGCGGCGGAGGCGGCGGCGGCG
GCGGCCGCAGCAGAGGCAGGCGTGCACATTGGTGAGTCAATCTCCCCCCC
CCTTCCAGGTATCGCGCCTCACTCGACTGTTGAGCTCTTCAGACAGCAGA
GAGACACTGTTGATTGTAGCGCCAAATCTATTGCAGCAGTCACGACAGAT
GAACGCTTGTTGTGGACGGGCCTGAGTGCCGCACGGCAGCGGCAGCATTT
CTCCACCCAAAGCCCCCCCCCCCCCACCCTCCCCCCTTTTTCTAGGCGCA
CAATAGCACCACTCCATCAGCCTGATCCTGACACGCACGTACCCCCCACC
CCAATCGCACAGGCAACGCGGCGCGCGCCGGCGGCGGAGCGTGGCGCCTG
CTGTTTGCGGAGACCGCGCGCAGCGGCTCCAGCGCCAGCGGCGTGCTGCT
GCGCCGCGTGCTGCGCCGCAGCGGCGCCGCCGCCGCCGCTGCTGCCGCCA
TCGGCAGCTGCGCGGTCGTCACGTATGCGTCGCAGAACCTGCGCATCGAG
CGCGGCACGAACGGCGAGCTGCGCGTCTTCCGCCGCCTGCTCGCGGCGCC
CGAGTGCGCGTGCGCTGACGGCGCCGAGCAGTGCTGCAGCAGCGGCGAGC
AGTGGTTCTGGCCCCTGTAAGGGGGGGGGGGG
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Coding sequence (CDS) from alignment at Contig_17:967774..969305-

>mRNA_3439 ID=mRNA_3439|Name=jgi.p|Trimin1|347958|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=807bp|location=Sequence derived from alignment at Contig_17:967774..969305- (Tribonema minus UTEX_B_3156 )
ATGCGCCGTGTTATAGCCGCTCTGGTATTCGCGTTCGTGGGAGACAAGTG
CGCCAACGCCTTCACGCCGGCGGCACCAAATGGCCCTGCCGGCAACAACA
GACATATCGCTGCCAGCTCCACGGCCCAAGCGACACCCACGCACCAGCTC
TCTTCTTGGGCCTCCAGCATCGAGAACATCGCGTCCAGGCTTGATGCGAT
AATCTGGGGCGGACGCACCGGAACGACGTCCGACGCCGCGGCCATCGCCG
CCACCGCCACGCCGCATGCCGTCGACGAGGAAGTCCTGCGACGCCGCGGC
ATCCGCCACTCCATCGTCGAGAAGCGCCGCCGCTCCCTCGAGCTCGAGGC
CGAACTTCAATCCCTGCTGCGCATCGCCGGCGGCAAGCCCTCCAAGATGG
AGCTCAACGAGGTGCACCGCCTGAGCGGCGAGCTTGAAGCGCTGCAGGCG
GCGGAGGCGGCGGCGGCGGCGGCCGCAGCAGAGGCAGGCGTGCACATTGG
CAACGCGGCGCGCGCCGGCGGCGGAGCGTGGCGCCTGCTGTTTGCGGAGA
CCGCGCGCAGCGGCTCCAGCGCCAGCGGCGTGCTGCTGCGCCGCGTGCTG
CGCCGCAGCGGCGCCGCCGCCGCCGCTGCTGCCGCCATCGGCAGCTGCGC
GGTCGTCACGTATGCGTCGCAGAACCTGCGCATCGAGCGCGGCACGAACG
GCGAGCTGCGCGTCTTCCGCCGCCTGCTCGCGGCGCCCGAGTGCGCGTGC
GCTGACGGCGCCGAGCAGTGCTGCAGCAGCGGCGAGCAGTGGTTCTGGCC
CCTGTAA
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