mRNA_3388 (mRNA) Tribonema minus UTEX_B_3156

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
Namejgi.p|Trimin1|347924
Unique NamemRNA_3388
TypemRNA
OrganismTribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Homology
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BLAST of jgi.p|Trimin1|347924 vs. uniprot
Match: A0A835Z7M5_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z7M5_9STRA)

HSP 1 Score: 152 bits (385), Expect = 1.210e-45
Identity = 82/82 (100.00%), Postives = 82/82 (100.00%), Query Frame = 1 
Query:    1 MGGDDGFSASELRQRYSRGGTAKDSELSAAQLRARYGIANKPDVGMDKKGGANSSGQSSIATMVILVCILAAAGVAAAVFLQ 246
            MGGDDGFSASELRQRYSRGGTAKDSELSAAQLRARYGIANKPDVGMDKKGGANSSGQSSIATMVILVCILAAAGVAAAVFLQ
Sbjct:    1 MGGDDGFSASELRQRYSRGGTAKDSELSAAQLRARYGIANKPDVGMDKKGGANSSGQSSIATMVILVCILAAAGVAAAVFLQ 82
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BLAST of jgi.p|Trimin1|347924 vs. uniprot
Match: A0A8K1FGD4_PYTOL (Uncharacterized protein n=1 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1FGD4_PYTOL)

HSP 1 Score: 58.9 bits (141), Expect = 7.600e-9
Identity = 37/70 (52.86%), Postives = 43/70 (61.43%), Query Frame = 1 
Query:   10 DDGFSASELRQRYSRGGTAKDSELSAAQLRARYGIANKPDVGMDKKGGANSSGQSSIATMVILVCILAAA 219
            DDG +ASELRQRY RGG  +DS+LSAAQLRARY I      G   K   +SS    I   V+ V +LA A
Sbjct:    3 DDGMTASELRQRYERGGLVRDSDLSAAQLRARYAIP-----GNTFKEDPSSSNMMMIVGAVVAVVVLAGA 67
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BLAST of jgi.p|Trimin1|347924 vs. uniprot
Match: A0A0P1AF08_PLAHL (Uncharacterized protein n=1 Tax=Plasmopara halstedii TaxID=4781 RepID=A0A0P1AF08_PLAHL)

HSP 1 Score: 58.2 bits (139), Expect = 1.440e-8
Identity = 33/66 (50.00%), Postives = 45/66 (68.18%), Query Frame = 1 
Query:   10 DDGFSASELRQRYSRGGTAKDSELSAAQLRARYGIANKPDVGMDKKGGANSSGQSSIATMVILVCI 207
            DDG SAS+LRQRY RGG+ +D +LSAAQLR+RY IA        +K  A+S+    +A +V+LV +
Sbjct:    2 DDGLSASDLRQRYERGGSVRDCDLSAAQLRSRYAIAGNTF----EKQQADSNATIIVAVIVVLVIL 63
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BLAST of jgi.p|Trimin1|347924 vs. uniprot
Match: A0A2D4BS94_PYTIN (Uncharacterized protein n=1 Tax=Pythium insidiosum TaxID=114742 RepID=A0A2D4BS94_PYTIN)

HSP 1 Score: 58.2 bits (139), Expect = 1.510e-8
Identity = 30/43 (69.77%), Postives = 35/43 (81.40%), Query Frame = 1 
Query:   10 DDGFSASELRQRYSRGGTAKDSELSAAQLRARYGIAN---KPD 129
            DDG++ASELRQRY RGG+ +D +LSAAQLRARY I N   KPD
Sbjct:    3 DDGYTASELRQRYERGGSVQDCDLSAAQLRARYAIPNNTFKPD 45
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BLAST of jgi.p|Trimin1|347924 vs. uniprot
Match: A0A0G4H4G1_VITBC (Uncharacterized protein n=2 Tax=Vitrella brassicaformis TaxID=1169539 RepID=A0A0G4H4G1_VITBC)

HSP 1 Score: 56.2 bits (134), Expect = 9.170e-8
Identity = 34/63 (53.97%), Postives = 42/63 (66.67%), Query Frame = 1 
Query:   10 DDGFSASELRQRYSRGGTAKDSELSAAQLRARYGIANKPDVGMDKKGGANSSGQSSIATMVIL 198
            DDG SASELR+RY  GG+A DSELSAAQLRAR+ + N+ +   D  GG      + IA +V L
Sbjct:    3 DDGLSASELRRRYGPGGSAPDSELSAAQLRARHNVQNR-EFRADDGGGVLMYVVAGIALIVFL 64
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BLAST of jgi.p|Trimin1|347924 vs. uniprot
Match: A0A1W0A1W3_9STRA (Uncharacterized protein n=1 Tax=Thraustotheca clavata TaxID=74557 RepID=A0A1W0A1W3_9STRA)

HSP 1 Score: 53.9 bits (128), Expect = 6.290e-7
Identity = 37/78 (47.44%), Postives = 45/78 (57.69%), Query Frame = 1 
Query:   10 DDGFSASELRQRYSRGGTAKDSELSAAQLRARYGIANKPDVGMDKKGGANSSGQSSIATMVILVCILAAAGVAAAVFL 243
            DDG++A+ELR RY RGGT  DS+LSAAQLR+RY I         +K       QS+   M+       AAGVA AV L
Sbjct:    3 DDGYTATELRSRYGRGGTVGDSDLSAAQLRSRYSI---------EKNTFKDHPQSNKTVMI-------AAGVAIAVIL 64
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BLAST of jgi.p|Trimin1|347924 vs. uniprot
Match: A0A2P4WVY7_9STRA (Uncharacterized protein n=1 Tax=Phytophthora palmivora var. palmivora TaxID=611791 RepID=A0A2P4WVY7_9STRA)

HSP 1 Score: 53.9 bits (128), Expect = 6.440e-7
Identity = 31/67 (46.27%), Postives = 39/67 (58.21%), Query Frame = 1 
Query:   10 DDGFSASELRQRYSRGGTAKDSELSAAQLRARYGIANKPDVGMDKKGGANSSGQSSIATMVILVCIL 210
            DDG +ASELRQRY RGG+ +D +LSAAQLR+RY I           G      QS    MVI+  ++
Sbjct:    2 DDGMTASELRQRYERGGSVRDCDLSAAQLRSRYAI----------PGNTFKEKQSDTNAMVIIAAVV 58
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BLAST of jgi.p|Trimin1|347924 vs. uniprot
Match: A0A225X142_9STRA (Microfibrillar-associated protein 1 n=1 Tax=Phytophthora megakarya TaxID=4795 RepID=A0A225X142_9STRA)

HSP 1 Score: 57.4 bits (137), Expect = 9.620e-7
Identity = 33/67 (49.25%), Postives = 45/67 (67.16%), Query Frame = 1 
Query:   10 DDGFSASELRQRYSRGGTAKDSELSAAQLRARYGIANKPDVGMDKKGGANSSGQSSIATMVILVCIL 210
            DDG +ASELRQRY RGG+ +DS+LSAAQLR+RY I         K+  ++S+    IA +V+L  I+
Sbjct:    2 DDGMTASELRQRYERGGSVRDSDLSAAQLRSRYAIPGNTF----KEKQSDSNTMMIIAAIVVLTSIM 64
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BLAST of jgi.p|Trimin1|347924 vs. uniprot
Match: A0A485LRJ3_9STRA (Aste57867_24848 protein n=2 Tax=Aphanomyces TaxID=100860 RepID=A0A485LRJ3_9STRA)

HSP 1 Score: 53.1 bits (126), Expect = 1.270e-6
Identity = 25/36 (69.44%), Postives = 30/36 (83.33%), Query Frame = 1 
Query:    7 GDDGFSASELRQRYSRGGTAKDSELSAAQLRARYGI 114
            GDDG +ASELR RY RGG+ +D +LSAAQLR+RY I
Sbjct:    2 GDDGMTASELRSRYGRGGSVRDCDLSAAQLRSRYAI 37
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BLAST of jgi.p|Trimin1|347924 vs. uniprot
Match: W2LD83_PHYPR (Uncharacterized protein n=8 Tax=Phytophthora TaxID=4783 RepID=W2LD83_PHYPR)

HSP 1 Score: 52.0 bits (123), Expect = 3.530e-6
Identity = 25/35 (71.43%), Postives = 29/35 (82.86%), Query Frame = 1 
Query:   10 DDGFSASELRQRYSRGGTAKDSELSAAQLRARYGI 114
            DDG SASELRQRY RGG+ +DS+LSAAQ  +RY I
Sbjct:    2 DDGMSASELRQRYERGGSVRDSDLSAAQXXSRYAI 36
The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|347924 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 13
Match NameE-valueIdentityDescription
A0A835Z7M5_9STRA1.210e-45100.00Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A8K1FGD4_PYTOL7.600e-952.86Uncharacterized protein n=1 Tax=Pythium oligandrum... [more]
A0A0P1AF08_PLAHL1.440e-850.00Uncharacterized protein n=1 Tax=Plasmopara halsted... [more]
A0A2D4BS94_PYTIN1.510e-869.77Uncharacterized protein n=1 Tax=Pythium insidiosum... [more]
A0A0G4H4G1_VITBC9.170e-853.97Uncharacterized protein n=2 Tax=Vitrella brassicaf... [more]
A0A1W0A1W3_9STRA6.290e-747.44Uncharacterized protein n=1 Tax=Thraustotheca clav... [more]
A0A2P4WVY7_9STRA6.440e-746.27Uncharacterized protein n=1 Tax=Phytophthora palmi... [more]
A0A225X142_9STRA9.620e-749.25Microfibrillar-associated protein 1 n=1 Tax=Phytop... [more]
A0A485LRJ3_9STRA1.270e-669.44Aste57867_24848 protein n=2 Tax=Aphanomyces TaxID=... [more]
W2LD83_PHYPR3.530e-671.43Uncharacterized protein n=8 Tax=Phytophthora TaxID... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Contig_17contigContig_17:579130..580014 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Tribonema minus UTEX_B_31562021-06-17
Properties
Property NameValue
ProteomeIdTrimin1|347924|estExt_Genemark1.C_Ctg_170077
Max annot lvl4776|Peronosporales
EggNOG OGs2E6J9@1|root,2SD8M@2759|Eukaryota,3QIKG@4776|Peronosporales
Evalue8.1e-08
Seed ortholog4792.ETI48993
Hectar predicted targeting categorysignal anchor
TranscriptId348246
TrackFilteredModels1
ProteinId347924
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|347924gene_3388Tribonema minus UTEX_B_3156 geneContig_17 579130..580014 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
exon_3388_2exon_3388_2Tribonema minus UTEX_B_3156 exonContig_17 579130..579458 -
exon_3388_1exon_3388_1Tribonema minus UTEX_B_3156 exonContig_17 579888..580014 -


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
UTR3_3388UTR3_3388Tribonema minus UTEX_B_3156 three_prime_UTRContig_17 579130..579336 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
CDS_3388CDS_3388Tribonema minus UTEX_B_3156 CDSContig_17 579888..580014 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|347924Trimin1|347924|estExt_Genemark1.C_Ctg_170077Tribonema minus UTEX_B_3156 polypeptideContig_17 579337..580014 -


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>mRNA_3388 ID=mRNA_3388|Name=jgi.p|Trimin1|347924|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=456bp|location=Sequence derived from alignment at Contig_17:579130..580014- (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon.  
ATGGGAGGCGACGATGGATTCTCGGCGTCAGAGCTGCGGCAGCGGTACAG
CAGAGGCGGTACCGCTAAGGATTCAGAGCTGAGTGCAGCTCAGCTGAGGG
CACGTTATGGAATCGCCAACAAGCCAGATGTGGGGATGGACAAGAAGGGC
GGCGCTAACAGCTCAGGACAGTCGAGCATTGCGACAATGGTGATCCTGGT
GTGCATACTGGCAGCGGCGGGCGTGGCGGCAGCGGTGTTTCTCCAATGAT
ATGCGAGGCGTGGCTGCGCACGCGGCGCACGCCAGAAGTACAAAGTAGAG
CAAACACTGGTGCCAGTCAGTGCCATGTACAGACCAGGGAGAGCTACAGC
CAGTGAGGAGATGCACAGACGTTCTCTCTGAGGGCAAAGACGCTCGAGCC
ATTCCCAAAGACACATGCGATTCTCCAGCTGGAAATAAACATCACATAGC
ACGCGG
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protein sequence of jgi.p|Trimin1|347924

>Trimin1|347924|estExt_Genemark1.C_Ctg_170077 ID=Trimin1|347924|estExt_Genemark1.C_Ctg_170077|Name=jgi.p|Trimin1|347924|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=83bp
MGGDDGFSASELRQRYSRGGTAKDSELSAAQLRARYGIANKPDVGMDKKG
GANSSGQSSIATMVILVCILAAAGVAAAVFLQ*
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mRNA from alignment at Contig_17:579130..580014-

Legend: polypeptideexonCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_3388 ID=mRNA_3388|Name=jgi.p|Trimin1|347924|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=885bp|location=Sequence derived from alignment at Contig_17:579130..580014- (Tribonema minus UTEX_B_3156 )
ATGGGAGGCGACGATGGATTCTCGGCGTCAGAGCTGCGGCAGCGGTACAG
CAGAGGCGGTACCGCTAAGGATTCAGAGCTGAGTGCAGCTCAGCTGAGGG
CACGTTATGGAATCGCCAACAAGCCAGGTATGCTGCTCGTGCGTAAGGTC
TCTTCTGGCACAACAATAATTTGGTGTTGATCTGGGTGCCTTAGATGCTG
GTGCATGCCCGCAACAGGTGTGAAGCATGCGTCTCAACACATATTACTCC
ATCATCGATAAGAGATTCACAGCCTGAACGTCATAGCGAGAGCAAGCAAA
GACGCGAGGTTTTACATGGTCCTCGGCGTACTTTGGGTGATGTTAGATGC
CAGCGCATGCCCGCATAGGTGCGAAGCCTGCGTCTCAATTCAGGTCACTC
GGTGATCGATAGGAGATGCACAGCCTGATCATCGTCGTAGTGAGAGCAAG
CAAAGACGCGAGGTCTTATGTGGTCACCTTCATGTTCACAAGACCACGAC
ATTGACCTCCCGTAGCGTTCTCACCCAAAGGACGCACTCTGGCTGCTTCC
GTACAGATGTGGGGATGGACAAGAAGGGCGGCGCTAACAGCTCAGGACAG
TCGAGCATTGCGACAATGGTGATCCTGGTGTGCATACTGGCAGCGGCGGG
CGTGGCGGCAGCGGTGTTTCTCCAATGATATGCGAGGCGTGGCTGCGCAC
GCGGCGCACGCCAGAAGTACAAAGTAGAGCAAACACTGGTGCCAGTCAGT
GCCATGTACAGACCAGGGAGAGCTACAGCCAGTGAGGAGATGCACAGACG
TTCTCTCTGAGGGCAAAGACGCTCGAGCCATTCCCAAAGACACATGCGAT
TCTCCAGCTGGAAATAAACATCACATAGCACGCGG
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Coding sequence (CDS) from alignment at Contig_17:579130..580014-

>mRNA_3388 ID=mRNA_3388|Name=jgi.p|Trimin1|347924|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=249bp|location=Sequence derived from alignment at Contig_17:579130..580014- (Tribonema minus UTEX_B_3156 )
ATGGGAGGCGACGATGGATTCTCGGCGTCAGAGCTGCGGCAGCGGTACAG
CAGAGGCGGTACCGCTAAGGATTCAGAGCTGAGTGCAGCTCAGCTGAGGG
CACGTTATGGAATCGCCAACAAGCCAGATGTGGGGATGGACAAGAAGGGC
GGCGCTAACAGCTCAGGACAGTCGAGCATTGCGACAATGGTGATCCTGGT
GTGCATACTGGCAGCGGCGGGCGTGGCGGCAGCGGTGTTTCTCCAATGA
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