mRNA_3380 (mRNA) Tribonema minus UTEX_B_3156
Overview
Homology
BLAST of jgi.p|Trimin1|347920 vs. uniprot
Match: A0A835ZAQ6_9STRA (V-SNARE domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZAQ6_9STRA) HSP 1 Score: 319 bits (817), Expect = 1.570e-109 Identity = 179/179 (100.00%), Postives = 179/179 (100.00%), Query Frame = 1 Query: 1 MASPMFESYVEEILTLAAEVRHLLQTGSVGDVDRAVLQLGEAHDLLRQLEVEARSATDAATRADLQAQVQAHKASLASLRTASERRQLVSRVDGSDPAAAAAQRQRMLDAGDTLAQQAAMLAAAKGALLETEGVAGEVTAELGRNRETIQSAHSKVKETGSMMDEAKQLLNMMGKWYRR 537 MASPMFESYVEEILTLAAEVRHLLQTGSVGDVDRAVLQLGEAHDLLRQLEVEARSATDAATRADLQAQVQAHKASLASLRTASERRQLVSRVDGSDPAAAAAQRQRMLDAGDTLAQQAAMLAAAKGALLETEGVAGEVTAELGRNRETIQSAHSKVKETGSMMDEAKQLLNMMGKWYRR Sbjct: 1 MASPMFESYVEEILTLAAEVRHLLQTGSVGDVDRAVLQLGEAHDLLRQLEVEARSATDAATRADLQAQVQAHKASLASLRTASERRQLVSRVDGSDPAAAAAQRQRMLDAGDTLAQQAAMLAAAKGALLETEGVAGEVTAELGRNRETIQSAHSKVKETGSMMDEAKQLLNMMGKWYRR 179
BLAST of jgi.p|Trimin1|347920 vs. uniprot
Match: A0A836CJ32_9STRA (Soluble NSF attachment protein receptor n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CJ32_9STRA) HSP 1 Score: 127 bits (319), Expect = 2.440e-33 Identity = 90/192 (46.88%), Postives = 122/192 (63.54%), Query Frame = 1 Query: 13 MFESYVEEILTLAAEVRHLLQTGSV---------GDVDRAVLQLGEAHDLLRQLEVEARSATDAATRADLQAQVQAHKASLASLR----TA---SERRQLVSRVDG-----SDPAAAAAQRQRMLDAGDTLAQQAAMLAAAKGALLETEGVAGEVTAELGRNRETIQSAHSKVKETGSMMDEAKQLLNMMGK 525 +FESY EE +TL ++ + S G + +A + LG+A DLL+Q+EVEARS DA TR DLQA+V ++K SLAS+R TA +ER+ L+S DG S A+ R+R+L GD L +Q+ MLA +K +LE EGVAGE+T ELGRNRETIQSAH KV+E +M A++L++ M K Sbjct: 4 IFESYHEEFVTLTTDLSRNISHASTYETNPAARSGQLRQANVLLGQADDLLKQMEVEARSTPDAPTRRDLQAKVASYKKSLASVRRDYQTAVEKTERQGLMSTADGLEHLYSQAGASKEHRERLLKTGDKLNEQSEMLANSKRTILEIEGVAGEITTELGRNRETIQSAHGKVREVSAMTANARRLVHNMSK 195
BLAST of jgi.p|Trimin1|347920 vs. uniprot
Match: A0A7S2V424_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2V424_9STRA) HSP 1 Score: 92.4 bits (228), Expect = 1.030e-19 Identity = 75/191 (39.27%), Postives = 109/191 (57.07%), Query Frame = 1 Query: 1 MASPMFESYVEEILTLAAEVRHLLQTGSVGDVD--------RAV-LQLGEAHDLLRQLEVEARSATDAATRADLQAQVQAHKASLASLRTA-------SERRQLVSRVDGSDPAAAAAQRQRMLDAGDTLAQQAAMLAAAKGALLETEGVAGEVTAELGRNRETIQSAHSKVKETGSMMDEAKQLLNMMGK 525 MAS MFE Y EE +L+ ++ + + + D R V L +A +LL+Q+E+EARS +D+ R +LQ + Q + +L LR ERR L+ GS +A QRQR+L +G L Q + L+ A+ + ETE VA E+T ELGRNRE I+S HSKV+E GSM A+++++ M K Sbjct: 21 MAS-MFEDYCEEFSSLSTQISKNISDITTYEDDAEKKKKLLRTVDTMLVQASELLQQMELEARSESDSGARQELQGRAQQYGTTLDRLRADHARARQDEERRDLMGGA-GSGKGISADQRQRLLKSGQLLDDQTSKLSNARAVIQETEEVALEITQELGRNREKIESVHSKVREVGSMTHTARRIIHSMNK 209
BLAST of jgi.p|Trimin1|347920 vs. uniprot
Match: A0A6U0HSB3_9STRA (Hypothetical protein n=1 Tax=Helicotheca tamesis TaxID=374047 RepID=A0A6U0HSB3_9STRA) HSP 1 Score: 82.4 bits (202), Expect = 7.430e-16 Identity = 68/197 (34.52%), Postives = 105/197 (53.30%), Query Frame = 1 Query: 1 MASPMFESYVEEILTLAAEVRHLLQTGSV----------GDVDRAVLQLGEAHDLLRQLEVEARSATDAATRADLQAQVQAHKASLASLR-------TASERRQLV-----SRVDGSDPAAAAAQRQRMLDAGDTLAQQAAMLAAAKGALLETEGVAGEVTAELGRNRETIQSAHSKVKETGSMMDEAKQLLNMMGK 525 M++ FE Y EE L L ++ L + + D+ A L + DLL+Q+ VEAR A + T+ DL +V+ KA LA+LR + +ER L+ SRVDG A+ + ++R+L D + Q L A+ + +TE A E+T ELGRNRETIQSAH +V+E + + A++++ M + Sbjct: 27 MSTVSFERYDEEFLLLTEQIEKSLSSLDIESNQASSSAESDLKLASNILSQCDDLLKQMSVEARGADNPDTKRDLLHKVRICKAKLANLREDYDKAKSKAERMSLIGSSSGSRVDG----ASGSHKERLLANSDRIKSQNETLDRARRVMADTEETAMEITTELGRNRETIQSAHGRVREVSGLTNRARRIVQNMSR 219
BLAST of jgi.p|Trimin1|347920 vs. uniprot
Match: A0A6S8XXA7_9STRA (Hypothetical protein n=1 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A6S8XXA7_9STRA) HSP 1 Score: 81.3 bits (199), Expect = 1.290e-15 Identity = 69/193 (35.75%), Postives = 106/193 (54.92%), Query Frame = 1 Query: 1 MASPMFESYVEEILTLAAEVRHLL----------QTGSVGDVDRAVLQLGEAHDLLRQLEVEARSATDAATRADLQAQVQAHKASLASLR----TAS---ERRQLVSRVDG-SDPAAAAAQRQRMLDAGDTLAQQAAMLAAAKGALLETEGVAGEVTAELGRNRETIQSAHSKVKETGSMMDEAKQLLNMMGK 525 M+S FE Y EE L+L +V+ L + + D+ A+ L + DLL+Q+ VEAR A +A T+ +L +V+ KA LA+LR TA ER L+S G S A + ++R+L + + Q L A+ + +TE A E+T ELGRNRETIQSAH +V+E + + A++++ M + Sbjct: 1 MSSISFERYDEEFLSLTEQVQKSLTSLDIESAQSSSSAESDLKFALNLLSQCEDLLKQMSVEARGADNADTKKELLHKVRVCKAKLANLRDDYETAKNEIERMSLISPSLGPSRGNGAGSHKERLLATSEKIKSQNDTLERARRIMADTEETAMEITTELGRNRETIQSAHGRVREVSGLTNRARRIVQNMSR 193
BLAST of jgi.p|Trimin1|347920 vs. uniprot
Match: A0A7R9ZE01_9STRA (Hypothetical protein n=1 Tax=Pseudictyota dubia TaxID=2749911 RepID=A0A7R9ZE01_9STRA) HSP 1 Score: 75.1 bits (183), Expect = 3.670e-13 Identity = 64/196 (32.65%), Postives = 103/196 (52.55%), Query Frame = 1 Query: 1 MASPMFESYVEEILTLAAEVRHLLQT---------GSVG---DVDRAVLQLGEAHDLLRQLEVEARSATDAATRADLQAQVQAHKASLASLRTASE------RRQLVSRVDGSDPAAAAAQ---RQRMLDAGDTLAQQAAMLAAAKGALLETEGVAGEVTAELGRNRETIQSAHSKVKETGSMMDEAKQLLNMMGK 525 M+S F+ Y EE L+L +VR L + GS D+ L + DLL+Q+ +EARSA DA ++++L +V+ K+ L+ LR+ E R + +G+ P + R+R+L D L Q L A+ + ETE A E+T ELGRNRE I+SAH +V++ + + A++++ M + Sbjct: 17 MSSIPFDRYDEEFLSLTEQVRRSLSSLEGDLESNGGSSSVESDLKMTANLLSQCDDLLKQMGLEARSAGDAQSKSELLGKVKKCKSKLSGLRSEYEAARTKMERSHLGLDNGNAPRSGGLSNDHRERLLKTNDQLENQNRTLDRARRVMAETEDTALEITEELGRNREKIESAHGRVRDVAGLTNRARRIVQSMNR 212
BLAST of jgi.p|Trimin1|347920 vs. uniprot
Match: A0A7S4MGJ4_9STRA (Hypothetical protein n=1 Tax=Odontella aurita TaxID=265563 RepID=A0A7S4MGJ4_9STRA) HSP 1 Score: 72.8 bits (177), Expect = 2.500e-12 Identity = 64/193 (33.16%), Postives = 102/193 (52.85%), Query Frame = 1 Query: 1 MASPMFESYVEEILTLAAEVRHLLQT--GSV--------GDVDRAVLQLGEAHDLLRQLEVEARSATDAATRADLQAQVQAHKASLASLRTA-SERRQLVSRVD----GSDPAAAAAQ---RQRMLDAGDTLAQQAAMLAAAKGALLETEGVAGEVTAELGRNRETIQSAHSKVKETGSMMDEAKQLLNMMGK 525 M+S F+ Y EE L+L +VR L + G + D+ L + DLL+Q+ +EARS DA+ + +L +V+ K+ L LR+ + R + R + GS P + A R+R+L L +Q L A+ + ETE A E+T ELGRNRE I+SAH +VK+ + + A++++ M + Sbjct: 16 MSSIPFDRYDEEFLSLTEQVRRSLASLEGDIESGGSSVESDLKMTANLLSQCDDLLKQMGLEARSVGDASAKRELLDKVKKCKSKLQGLRSEYNAARNKMDRANLGLGGSAPHSGGASNDHRERLLKTSGQLEEQNRTLDRARRVMAETEETALEITEELGRNREKIESAHGRVKDVSGLTNRARRIVQSMNR 208
BLAST of jgi.p|Trimin1|347920 vs. uniprot
Match: A0A7S0FKY8_9STRA (Hypothetical protein (Fragment) n=1 Tax=Minutocellus polymorphus TaxID=265543 RepID=A0A7S0FKY8_9STRA) HSP 1 Score: 72.4 bits (176), Expect = 2.560e-12 Identity = 63/193 (32.64%), Postives = 100/193 (51.81%), Query Frame = 1 Query: 16 FESYVEEILTLAAEVRHLLQTGSVGDVDRAVLQ---------LGEAHDLLRQLEVEARSATDAATRADLQAQVQAHKASLASLR-------TASERRQLVSRVDGSDPAA-------AAAQRQRMLDAGDTLAQQAAMLAAAKGALLETEGVAGEVTAELGRNRETIQSAHSKVKETGSMMDEAKQLLNMMGK 525 F+ Y EE L ++VR LQ+ D++ + +Q L + DLL+Q+ +EAR +A T+A +V+ K+SL+ LR T ER L +DGS + QR R+L D +A Q L A+ + +TE A E+T+EL RNRE I+SAH +V+E + + A++++ M + Sbjct: 6 FDRYDEEFEELTSQVRRSLQSLKTADIESSSVQSDLQMTANLLSQCDDLLKQMSIEARGVDNADTKAKCLYKVRQCKSSLSDLRSEYETENTKFERSALG--LDGSSGRGXXXXGGLSNEQRGRLLKTNDQIASQNRTLDNARRIMSDTEETAMEITSELARNREKIESAHGRVREVSGLTNRARRIVQSMSR 196
BLAST of jgi.p|Trimin1|347920 vs. uniprot
Match: B8CG98_THAPS (V-SNARE domain-containing protein n=1 Tax=Thalassiosira pseudonana TaxID=35128 RepID=B8CG98_THAPS) HSP 1 Score: 68.6 bits (166), Expect = 6.750e-11 Identity = 69/196 (35.20%), Postives = 96/196 (48.98%), Query Frame = 1 Query: 16 FESYVEEILTLAAEV----RHLLQTGSVG-------DVDRAVLQLGEAHDLLRQLEVEARSATDAATRADLQAQVQAHKASLASLR-------TASERRQLVSRVD-----GSDPAAAAAQRQRMLDAGDTLAQQAAMLAAAKGALLETEGVAGEVTAELGRNRETIQSAHSKVKETGSMMDEAKQLLNMMGKWYR 534 FE Y EE L+L +V R L + S G D+ A L +A DLL+Q+ +EAR DA + DL +V+ K LA+LR + ER L D + ++ ++R+L D L Q+ LA A+ + ETEGVA E+T ELGR+RETI SAH + KE + E + W R Sbjct: 7 FERYDEEFLSLTEQVTSKLRSLDPSTSSGLPPTAEADIKMAHNLLLQADDLLKQMGLEARGVDDAGVKRDLLGKVRVCKTRLANLRDDYEAAKSNVERNSLGLNSDIESGGRNSRGRSSGSKERLLSNTDALQSQSETLANARSIMAETEGVAMEITEELGRHRETITSAHGRGKEDSAEYGEEGGAAEVDFVWCR 202
BLAST of jgi.p|Trimin1|347920 vs. uniprot
Match: A0A7S2UKP9_9STRA (Hypothetical protein n=1 Tax=Attheya septentrionalis TaxID=420275 RepID=A0A7S2UKP9_9STRA) HSP 1 Score: 64.3 bits (155), Expect = 2.910e-9 Identity = 60/192 (31.25%), Postives = 96/192 (50.00%), Query Frame = 1 Query: 16 FESYVEEILTLAAEVRHLL-------------QTGSVGDVDRAVLQLGEAHDLLRQLEVEARSATDAATRADLQAQVQAHKASLASLR-------TASERRQLV--SRVDGSDPAAAAAQRQRMLDAGDTLAQQAAMLAAAKGALLETEGVAGEVTAELGRNRETIQSAHSKVKETGSMMDEAKQLLNMMGK 525 FE Y EE +L +V L QT + L + DLL+Q+ VEAR DA+ + DL +V+ K LA+LR + +R+ L+ + + + + RQR+L+ ++ Q L A+ + ETE VA E+T+EL RNRETI+SAH +V+ + + A+++L M + Sbjct: 7 FERYDEEFDSLTQQVEQSLTKLKELPEKEDNNQTEESSSLRFTTGLLAQCDDLLKQMAVEARGVDDASLKRDLLHKVRICKTKLANLRDDVKTIQSDLDRKSLLRSNSLSQNGKQGNSDSRQRLLETTAHMSAQNDTLDHARRVMAETEDVALEITSELSRNRETIESAHGRVRNVSGLTNRARRILQNMSR 198 The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|347920 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 20
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following exon feature(s) are a part of this mRNA:
The following three_prime_UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
spliced messenger RNA >mRNA_3380 ID=mRNA_3380|Name=jgi.p|Trimin1|347920|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=552bp|location=Sequence derived from alignment at Contig_17:529614..532134- (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon. ATGGCGTCGCCCATGTTTGAGTCCTATGTGGAAGAGATCTTGACCTTGGCback to top protein sequence of jgi.p|Trimin1|347920 >Trimin1|347920|estExt_Genemark1.C_Ctg_170071 ID=Trimin1|347920|estExt_Genemark1.C_Ctg_170071|Name=jgi.p|Trimin1|347920|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=180bp MASPMFESYVEEILTLAAEVRHLLQTGSVGDVDRAVLQLGEAHDLLRQLEback to top mRNA from alignment at Contig_17:529614..532134- Legend: polypeptideexonCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_3380 ID=mRNA_3380|Name=jgi.p|Trimin1|347920|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=2521bp|location=Sequence derived from alignment at Contig_17:529614..532134- (Tribonema minus UTEX_B_3156 )back to top Coding sequence (CDS) from alignment at Contig_17:529614..532134- >mRNA_3380 ID=mRNA_3380|Name=jgi.p|Trimin1|347920|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=540bp|location=Sequence derived from alignment at Contig_17:529614..532134- (Tribonema minus UTEX_B_3156 )back to top |