mRNA_3378 (mRNA) Tribonema minus UTEX_B_3156
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Overview
Homology
BLAST of jgi.p|Trimin1|347919 vs. uniprot
Match: A0A835ZCV6_9STRA (Glutathione S-transferase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZCV6_9STRA) HSP 1 Score: 538 bits (1386), Expect = 2.530e-190 Identity = 288/288 (100.00%), Postives = 288/288 (100.00%), Query Frame = 1
Query: 1 MATNTQLLKRRRHAQHVXXXXXXXXXXXXXHLTLYYLDLPWAARAEPLRIALEIAGLDYEYKTLSAQEFLAIQTALPFGQLPVLEIRHSDYQYTLAQSNTILRYIGRLGKGQIYPKDPLLAGRCDEVMDAVQDVYSLLAPSNRERDHAVKVSMRQALAANGLPKWLHFLEAKLTANNTGYFVGSGLTVADLMASQLVTWLTAGLLEGIPPSIVAAFPRLCGLRALLLQHPAVRAYAQRVAAPVPSEAATLPSLLHQRSACAPAPLPTSPVRCHDSDAADLRDESSDGE 864
MATNTQLLKRRRHAQHVXXXXXXXXXXXXXHLTLYYLDLPWAARAEPLRIALEIAGLDYEYKTLSAQEFLAIQTALPFGQLPVLEIRHSDYQYTLAQSNTILRYIGRLGKGQIYPKDPLLAGRCDEVMDAVQDVYSLLAPSNRERDHAVKVSMRQALAANGLPKWLHFLEAKLTANNTGYFVGSGLTVADLMASQLVTWLTAGLLEGIPPSIVAAFPRLCGLRALLLQHPAVRAYAQRVAAPVPSEAATLPSLLHQRSACAPAPLPTSPVRCHDSDAADLRDESSDGE
Sbjct: 1 MATNTQLLKRRRHAQHVXXXXXXXXXXXXXHLTLYYLDLPWAARAEPLRIALEIAGLDYEYKTLSAQEFLAIQTALPFGQLPVLEIRHSDYQYTLAQSNTILRYIGRLGKGQIYPKDPLLAGRCDEVMDAVQDVYSLLAPSNRERDHAVKVSMRQALAANGLPKWLHFLEAKLTANNTGYFVGSGLTVADLMASQLVTWLTAGLLEGIPPSIVAAFPRLCGLRALLLQHPAVRAYAQRVAAPVPSEAATLPSLLHQRSACAPAPLPTSPVRCHDSDAADLRDESSDGE 288
BLAST of jgi.p|Trimin1|347919 vs. uniprot
Match: B1N8E8_9PHAE (Glutathione S-transferase 3 n=1 Tax=Laminaria digitata TaxID=80365 RepID=B1N8E8_9PHAE) HSP 1 Score: 134 bits (336), Expect = 2.260e-33 Identity = 83/205 (40.49%), Postives = 122/205 (59.51%), Query Frame = 1
Query: 94 LTLYYLDLPWAARAEPLRIALEIAGLDYEYKTLSAQEFLAIQTALPFGQLPVLEIRHSDYQYTLAQSNTILRYIGRLGKGQIYPKDPLLAGRCDEVMDAVQDVYSLLAPSNRERDHAVKVSMRQALAANGLPKWLHFLEAKLTANNTGYFVGSGLTVADLMASQLVTWLTAGLLEGIPPSIV-AAFPRLCGLRALLLQHPAVRAY 705
L L Y D+P AA EP+R ALE +G ++E K L+ +EF ++ +LP GQLPVLE+ YTL QS TILRY+G+LG ++P D L A +CD V+DA D Y + P+ E+D A ++ M LA N +PKWL +E +L A YF ++VAD+M + + L G G+P +I +++P L L ++ P + A+
Sbjct: 5 LVLTYFDIPGAA--EPIRWALEQSGQEWEDKRLTGEEFGVVKPSLPNGQLPVLEVDG----YTLPQSMTILRYVGKLGG--LHPSDDLEAAKCDAVLDAAVDFYINVRPAYTEKDQAKQLEMFGDLAVNYIPKWLANVEKQLAATEGIYFAEK-MSVADIMITTRLKTLRDGNYNGVPTTIFDSSYPNLNALYDSIVGEPKIAAF 200
BLAST of jgi.p|Trimin1|347919 vs. uniprot
Match: A0A520P9E2_9PROT (Glutathione S-transferase n=2 Tax=root TaxID=1 RepID=A0A520P9E2_9PROT) HSP 1 Score: 130 bits (327), Expect = 8.580e-32 Identity = 84/210 (40.00%), Postives = 118/210 (56.19%), Query Frame = 1
Query: 94 LTLYYLDLPWAARAEPLRIALEIAGLDYEYKTLSAQEFLAIQ--------TALPFGQLPVLEIRHSDYQYTLAQSNTILRYIGRLGKGQIYPKDPLLAGRCDEVMDAVQDVYSLLAPSNRERDHAVKVSMRQALAANGLPKWLHFLEAKLTANNTGYFVGSGLTVADLMASQLVTWLTAGLLEGIPPSIVAAFPRLCGLRALLLQHPAVR 699
L + YLDLP+ RAE R+AL IA + +E +++ EF +Q T +PF QLPVL I +AQ+ I R G+L +YPKD + AG+ D+++D V D+ LL PS RE D K MR L LP + FLE L NN+ +FVG ++VAD+ L+ W+TAG+L+ IP ++ F RL L + Q+P VR
Sbjct: 3 LKIVYLDLPFW-RAEVARLALFIADIKFEDLRINSAEFSYLQENGKLMDGTLIPFHQLPVLVINGQS----IAQTGGIARICGKLSG--MYPKDIIEAGKVDQIIDTVTDINELLNPSMRENDPIKKREMRAELTNKYLPNYFGFLENILHTNNSNWFVGGKMSVADIAVWGLLGWITAGVLDDIPTGVINPFKRLKKLYNEVSQNPRVR 205
BLAST of jgi.p|Trimin1|347919 vs. uniprot
Match: A0A2D9R0S2_9GAMM (Uncharacterized protein n=3 Tax=root TaxID=1 RepID=A0A2D9R0S2_9GAMM) HSP 1 Score: 130 bits (327), Expect = 8.580e-32 Identity = 82/210 (39.05%), Postives = 120/210 (57.14%), Query Frame = 1
Query: 94 LTLYYLDLPWAARAEPLRIALEIAGLDYEYKTLSAQEFLAIQ--------TALPFGQLPVLEIRHSDYQYTLAQSNTILRYIGRLGKGQIYPKDPLLAGRCDEVMDAVQDVYSLLAPSNRERDHAVKVSMRQALAANGLPKWLHFLEAKLTANNTGYFVGSGLTVADLMASQLVTWLTAGLLEGIPPSIVAAFPRLCGLRALLLQHPAVR 699
L + YLDLP+ RAE RI L IA + ++ ++++EF +Q T +PF QLPVL I +AQ+ I R G+L +YP+D + AG D+++D V D+ LL PS RE D A K MR L + LPK+ +LE L+ANN+ +FVG +++AD+ L+ W +G+L+ IPP I+ F RL L + + P VR
Sbjct: 3 LKIIYLDLPFW-RAEVARITLFIADIKFDDFRINSEEFSYLQENGRLKDGTLIPFRQLPVLVINGQS----IAQTGGIARICGKLSG--MYPEDMIEAGEVDQIIDTVTDINELLNPSMRENDQAKKKEMRAELTNHDLPKYFGYLEDILSANNSHWFVGDKMSIADIAVWGLLGWFASGVLDDIPPEILNPFERLKKLYQEVSKTPRVR 205
BLAST of jgi.p|Trimin1|347919 vs. uniprot
Match: F2U7D3_SALR5 (Uncharacterized protein n=1 Tax=Salpingoeca rosetta (strain ATCC 50818 / BSB-021) TaxID=946362 RepID=F2U7D3_SALR5) HSP 1 Score: 132 bits (332), Expect = 2.580e-31 Identity = 75/203 (36.95%), Postives = 126/203 (62.07%), Query Frame = 1
Query: 100 LYYLDLPWAARAEPLRIALEIAGLDYEYKTLSAQEFLAIQTALPFGQLPVLEIRHSDYQYTLAQSNTILRYIGRLGKGQIYPKDPLLAGRCDEVMDAVQDVYSLLAPSNRERDHAVKVSMRQALAANGLPKWLHFLEAKLTANNTGYFVGSG-LTVADLMASQLVTWLTAGLLEGIPPSIVAAFPRLCGLRALLLQHPAVRAY 705
L Y D+ RAEP R+A +AG+++ +S ++ ++ P+GQLP+L++ D Q +AQS+ I+R++G+ K +YP+D + A R DEV+ ++D+ L+ P+ +ERD K++MR+ LA + LP+WL L K + GY +G +++ADL A L+ WLT G+++GIP +IV L L+A + + P ++AY
Sbjct: 32 LVYFDI--RGRAEPARLAFHLAGVEFADVRVSRDQWCKLKPKCPYGQLPILQV---DGQI-IAQSSAIIRFVGK--KTNLYPEDHMEAARVDEVIGLIEDINWLIIPTIKERDMERKLAMRRELATDLLPRWLAVLNCKFS---NGYVLGPDRISIADLTAFTLIGWLTMGVMDGIPKTIVDKHANLKALQARIAKQPNLQAY 223
BLAST of jgi.p|Trimin1|347919 vs. uniprot
Match: A0A7Y5LLX0_9DELT (Glutathione S-transferase family protein n=1 Tax=Myxococcales bacterium TaxID=2026763 RepID=A0A7Y5LLX0_9DELT) HSP 1 Score: 124 bits (310), Expect = 1.290e-29 Identity = 78/211 (36.97%), Postives = 111/211 (52.61%), Query Frame = 1
Query: 91 HLTLYYLDLPWAARAEPLRIALEIAGLDYEYKTLSAQEFLAI--QTALPFGQLPVLEIRHSDYQYTLAQSNTILRYIGRLGKGQIYPKDPLLAGRCDEVMDAVQDVYSL-LAPSNRERDHAVKVSMRQALAANGLPKWLHFLEAKLTANNTGYFVGSGLTVADLMASQLVTWLTAGLLEGIPPSIVAAFPRLCGLRALLLQHPAVRAYAQR 714
+L L Y D P RAEP+R+AL IAGL Y+ K L E+ A+ Q P G +P E+ T+ Q+ ILRY+ R+G +YP DPL A D +D D S L PS ERD A K+ MR A + K L ++E + G+ L++ADL+ +Q + + AG L+GI P + +P L L + HP++ AY +R
Sbjct: 3 NLILTYFDFP--GRAEPIRVALFIAGLPYQDKRLKFPEYAALKEQGVFPLGAVPTFEVDG----VTMTQTAAILRYVARVGNTTLYPNDPLAAFVVDSALDTFNDTLSHELTPSLMERDMAKKLEMRAVFKAGPMLKVLQYVEGLAQRFGKPFLGGTDLSIADLVVAQQLLQIRAGGLDGISPEDLDPYPHLNALTDAYVNHPSIVAYQKR 207
BLAST of jgi.p|Trimin1|347919 vs. uniprot
Match: A0A2E1RBK4_9DELT (Uncharacterized protein n=2 Tax=Proteobacteria TaxID=1224 RepID=A0A2E1RBK4_9DELT) HSP 1 Score: 124 bits (310), Expect = 1.360e-29 Identity = 76/192 (39.58%), Postives = 113/192 (58.85%), Query Frame = 1
Query: 94 LTLYYLDLPWAARAEPLRIALEIAGLDYEYKTLSAQEFLAIQT--ALPFGQLPVLEIRHSDYQYTLAQSNTILRYIGRLGKGQIYPKDP-LLAGRCDEVMDAVQDVYSLLAPSNRERDHAVKVSMRQALAANGLPKWLHFLEAKLTAN-NTGYFVGSGLTVADLMASQLVTWLTAGLLEGIPPSIVAAFPRL 657
L L Y DLP+ RAE R+AL I G+++E S +E ++T PFGQ PVL++ T+AQ+ I R+ G+L +YP D A + DEV+D D+ + PS RE D ++ MR+ L+ LP+WL FLE L N +TG+FVGS ++VADL +L W++ G+++GI +++ FP L
Sbjct: 3 LRLIYPDLPFW-RAETSRLALFIGGIEFEDVRPSREEIPKMRTDGTFPFGQFPVLQVDGK----TIAQTGAIARFCGKLSG--LYPSDDNYAAAKVDEVIDLCTDITIQMRPSIRETDPKLRTEMRKELSETILPRWLGFLEKLLEDNGDTGFFVGSSISVADLAVWRLCAWISGGIIDGISTNLLEGFPLL 187
BLAST of jgi.p|Trimin1|347919 vs. uniprot
Match: A0A7S2V6C7_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2V6C7_9STRA) HSP 1 Score: 122 bits (306), Expect = 5.640e-29 Identity = 74/204 (36.27%), Postives = 111/204 (54.41%), Query Frame = 1
Query: 94 LTLYYLDLPWAARAEPLRIALEIAGLDYEYKTLSAQEFLAIQTALPFGQLPVLEIRHSDYQYTLAQSNTILRYIGRLGKGQIYPKDPLLAGRCDEVMDAVQDVYSLLAPSNRERDHAVKVSMRQALAANGLPKWLHFLEAKLTANNTGYFVGSGLTVADLMASQLVTWLTAGLLEGIPPSIVAAFPRLCGLRALLLQHPAVRAY 705
+ L Y LP RA R+A + G+D+E + ++F A++ +LP QLPVLE+ Y +S ILRY G+L +YP DP+ A +CD ++D +Q + +A + RE D K+ MR+ LA+ LP +LE +L + +G LT+ADL VTWLT G+L+GIPPS + F ++ + H V Y
Sbjct: 12 IKLTYFPLP--GRAGYTRLAFYVGGVDFEDVIVKGEDFQAMKDSLPGKQLPVLEVNGVTY----CESMAILRYAGKLSG--LYPSDPVEALKCDMLIDMIQGAGNKVAATIREPDAEKKMKMREELASQTLPTLFGYLEEQLNKFGGNFCIGDQLTIADLELLIKVTWLTKGILDGIPPSWIDPFTKVKAIVEATKNHEKVAEY 207
BLAST of jgi.p|Trimin1|347919 vs. uniprot
Match: A0A838INQ7_9DELT (Glutathione S-transferase family protein n=1 Tax=Bradymonadaceae bacterium TaxID=2740543 RepID=A0A838INQ7_9DELT) HSP 1 Score: 121 bits (304), Expect = 9.310e-29 Identity = 79/210 (37.62%), Postives = 116/210 (55.24%), Query Frame = 1
Query: 94 LTLYYLDLPWAARAEPLRIALEIAGLDYEYKTLSAQEFLAIQTA--LPFGQLPVLEIRHSDYQYTLAQSNTILRYIGRLGKGQIYPKDPLLAGRCDEVMDAVQDVYS-LLAPSNRERDHAVKVSMRQALAANGLPKWLHFLEAKLTANNTGYFVGSGLTVADLMASQLVTWLTAGLLEGIPPSIVAAFPRLCGLRALLLQHPAVRAYAQR 714
L L Y D A RAEPLRIAL IAGL +E LS ++F A++ A P G +PVLE+ + YT Q++ +LR++ RLG+ ++YP DP A D V+D D S + S E D A K+ MR AA + + + E+ L + +F+G+ L++ADL+A+ V + G +GI P + +P L L L P + AY Q+
Sbjct: 4 LKLTYFDA--AGRAEPLRIALFIAGLPFEDNRLSFEQFAALKQAGAFPLGSVPVLEV--DGFTYT--QTSAMLRFVARLGETKLYPGDPSEAFITDSVLDTFNDTLSNAMVASMFEPDMAKKLEMRAQFAAGPMARAFGYAESVLARSGGPFFLGASLSIADLVAAPNVLQIQGGRFDGISPEALLPYPGLVRLAEAYLADPRIVAYQQK 207
BLAST of jgi.p|Trimin1|347919 vs. uniprot
Match: A0A835YRD8_9STRA (Putative glutathione S-transferase n=2 Tax=Tribonema minus TaxID=303371 RepID=A0A835YRD8_9STRA) HSP 1 Score: 121 bits (303), Expect = 1.600e-28 Identity = 72/208 (34.62%), Postives = 120/208 (57.69%), Query Frame = 1
Query: 97 TLYYLDLPWAARAEPLRIALEIAGLDYEYKTLSAQEFLAIQTA--LPFGQLPVLEIRHSD-YQYTLAQSNTILRYI--GRLGKGQIYPKDPLLAGRCDEVMDAVQDVYSLLAPSNRERDHAVKVSMRQALAANGLPKWLHFLEAKLTANNTGYFVGSGLTVADLMASQLVTWLTAGLLEGIPPSIVAAFPRLCGLRALLLQHPAVRAY 705
TL+Y D+ A RAEPLR+A + G+++ + + E+ ++ + P+G +PVLE+ D + +A+ + I+ YI G + DPL R +E+ A + S ++P+ E+D KV+MR LA+ LP++L ++A+L ++GY G LT AD+ + V WL+ G+L+GIP +IV A+PR+ A + HP V A+
Sbjct: 7 TLHYFDM--AGRAEPLRLAFAVCGVEFTDRRFARDEWPEVKASGFPPYGHVPVLEVETEDGKKEVIAEFSAIMAYIVAAHGAAGGMARTDPLDIARVEEIRSATDAMVSKISPTMWEKDEEKKVAMRAELASTTLPRYLAAIDARL--QDSGYVSGDTLTAADINLEEAVAWLSKGILDGIPTTIVDAYPRVLKCAANVRDHPRVVAW 210 The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|347919 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following exon feature(s) are a part of this mRNA:
The following three_prime_UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
spliced messenger RNA >mRNA_3378 ID=mRNA_3378|Name=jgi.p|Trimin1|347919|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=1290bp|location=Sequence derived from alignment at Contig_17:522066..524489- (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon. ATGGCGACTAATACTCAGCTGTTGAAGAGGAGGCGGCATGCGCAGCATGTback to top protein sequence of jgi.p|Trimin1|347919 >Trimin1|347919|estExt_Genemark1.C_Ctg_170069 ID=Trimin1|347919|estExt_Genemark1.C_Ctg_170069|Name=jgi.p|Trimin1|347919|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=289bp MATNTQLLKRRRHAQHVVVDDGFQQQEQQQHLTLYYLDLPWAARAEPLRIback to top mRNA from alignment at Contig_17:522066..524489- Legend: polypeptideexonCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_3378 ID=mRNA_3378|Name=jgi.p|Trimin1|347919|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=2424bp|location=Sequence derived from alignment at Contig_17:522066..524489- (Tribonema minus UTEX_B_3156 )back to top Coding sequence (CDS) from alignment at Contig_17:522066..524489- >mRNA_3378 ID=mRNA_3378|Name=jgi.p|Trimin1|347919|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=867bp|location=Sequence derived from alignment at Contig_17:522066..524489- (Tribonema minus UTEX_B_3156 )back to top |