mRNA_3362 (mRNA) Tribonema minus UTEX_B_3156
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Overview
Homology
BLAST of jgi.p|Trimin1|347908 vs. uniprot
Match: A0A835ZFC3_9STRA (Aspartate carbamoyltransferase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZFC3_9STRA) HSP 1 Score: 645 bits (1665), Expect = 1.690e-233 Identity = 332/332 (100.00%), Postives = 332/332 (100.00%), Query Frame = 2
Query: 47 MEKYVPAPARAVFNLLQTNFTADAASWEGKCIISVKQFGLESLAKLFEVADEMKKLVKESGGDQRLQGRLLATLFFENSTRTCCSLQAAMLRLGGSVVSVNETTSSVKKGETLQDTIACLCSYCDVVALRHPQQGAAVQAVTATRRPLINAGDGVGEHPTQAILDVYTMVSELGGVEGKVITLVGDLKNGRTVHSLARLLALYACELHFVAPPALRMPEDVVRDVTARGRATVTQSDAFDAVLPRADVLYVTRVQKERFEDAAEYEALRLVYRVTPEVLARAKRDMVLMHPLPRVGEIAEDCDDDPRAAYVRQMENGMVVRMALLALLLGKA 1042
MEKYVPAPARAVFNLLQTNFTADAASWEGKCIISVKQFGLESLAKLFEVADEMKKLVKESGGDQRLQGRLLATLFFENSTRTCCSLQAAMLRLGGSVVSVNETTSSVKKGETLQDTIACLCSYCDVVALRHPQQGAAVQAVTATRRPLINAGDGVGEHPTQAILDVYTMVSELGGVEGKVITLVGDLKNGRTVHSLARLLALYACELHFVAPPALRMPEDVVRDVTARGRATVTQSDAFDAVLPRADVLYVTRVQKERFEDAAEYEALRLVYRVTPEVLARAKRDMVLMHPLPRVGEIAEDCDDDPRAAYVRQMENGMVVRMALLALLLGKA
Sbjct: 1 MEKYVPAPARAVFNLLQTNFTADAASWEGKCIISVKQFGLESLAKLFEVADEMKKLVKESGGDQRLQGRLLATLFFENSTRTCCSLQAAMLRLGGSVVSVNETTSSVKKGETLQDTIACLCSYCDVVALRHPQQGAAVQAVTATRRPLINAGDGVGEHPTQAILDVYTMVSELGGVEGKVITLVGDLKNGRTVHSLARLLALYACELHFVAPPALRMPEDVVRDVTARGRATVTQSDAFDAVLPRADVLYVTRVQKERFEDAAEYEALRLVYRVTPEVLARAKRDMVLMHPLPRVGEIAEDCDDDPRAAYVRQMENGMVVRMALLALLLGKA 332
BLAST of jgi.p|Trimin1|347908 vs. uniprot
Match: A0A2D4CAF1_PYTIN (Aspartate carbamoyltransferase n=2 Tax=Pythium insidiosum TaxID=114742 RepID=A0A2D4CAF1_PYTIN) HSP 1 Score: 369 bits (948), Expect = 1.390e-124 Identity = 191/313 (61.02%), Postives = 240/313 (76.68%), Query Frame = 2
Query: 110 ADAASWEGKCIISVKQFGLESLAKLFEVADEMKKLVKESGGDQRLQGRLLATLFFENSTRTCCSLQAAMLRLGGSVVSVNETTSSVKKGETLQDTIACLCSYCDVVALRHPQQGAAVQAVTATRRPLINAGDGVGEHPTQAILDVYTMVSELGGVE--GKVITLVGDLKNGRTVHSLARLLALYACELHFVAPPALRMPEDVVRDVTARGRATVTQSDAFDAVLPRADVLYVTRVQKERFEDAAEYEALRLVYRVTPEVLARAKRDMVLMHPLPRVGEIAEDCDDDPRAAYVRQMENGMVVRMALLALLLGKA 1042
A W G+ I+SV+QFG+ES ++ VADEMK +VK G L+G+LLA +F+E STRT CS QAAMLRLGG VVSVNE++SSVKKGETL DTI CL Y DV+ LRHP +G+A A AT +P++NAGDGVGEHPTQA+LD+YT+VSE+G + GKV+T+VGDLKNGRTVHSL++LLA + L +V+P +L+MP +V ++ ARG + SD D+V+ ++DVLYVTRVQKERFE EY A++ + +TP +A AK +V+MHPLPRVGEIAE D DPRAAY RQMENGM VRMALLAL+LGKA
Sbjct: 9 AGKGEWIGENILSVEQFGVESAKRVLRVADEMKAMVKRDGSSDLLKGKLLANVFYEPSTRTSCSFQAAMLRLGGLVVSVNESSSSVKKGETLSDTIKCLSCYADVLVLRHPVKGSAAIAAAATEKPVLNAGDGVGEHPTQALLDLYTIVSEMGTTDLRGKVVTMVGDLKNGRTVHSLSKLLAHFGVTLQYVSPASLQMPRYIVEELAARGVSQHETSD-LDSVVNQSDVLYVTRVQKERFESEDEYNAVKDSFIITPATIANAKSSLVIMHPLPRVGEIAEAVDSDPRAAYFRQMENGMYVRMALLALVLGKA 320
BLAST of jgi.p|Trimin1|347908 vs. uniprot
Match: D7G203_ECTSI (Aspartate carbamoyltransferase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G203_ECTSI) HSP 1 Score: 368 bits (945), Expect = 4.070e-123 Identity = 192/356 (53.93%), Postives = 251/356 (70.51%), Query Frame = 2
Query: 11 LTDIVSARQARQMEKYVPAPARAVFNLLQTNFTADAASWEGKCIISVKQFGLESLAKLFEVADEMKKLVKESGGDQRL------QGRLLATLFFENSTRTCCSLQAAMLRLGGSVVSVNETTSSVKKGETLQDTIACLCSYCDVVALRHPQQGAAVQAVTATRRPLINAGDGVGEHPTQAILDVYTMVSELGG------VEGKVITLVGDLKNGRTVHSLARLLALYACELHFVAPPALRMPEDVVRDVTARGRATVTQSDAFDAVLPRADVLYVTRVQKERFEDAAEYEALRLVYRVTPEVLARAKRDMVLMHPLPRVGEIAEDCDDDPRAAYVRQMENGMVVRMALLALLLGKA 1042
++D+V+ +A++ E+ + FTAD ASWEGK ++SV QF E L L+ VA +MK++V + D L +GR+L TLF+E STRT CS QAA+ RLGG+ VSV+ +SS+KKGE+L+DT+ L SYCD VALRHP +GAA AV RRP++NAGDGVGEHPTQA+LD+YT+ +ELGG + GKV+ L+GDLK+GRTVHSLA+LLA + C L +V+P +L+MP + +V + G + T+ + VL ADVLYVTRVQKERF E++ + Y++TPEVL++ K VLMHPLPRVGEI EDCD DPRAAY +QMENGM VRMALLAL+ GKA
Sbjct: 46 VSDLVAKDRAKRAEENM------------ATFTADKASWEGKSVVSVSQFSTEGLGLLYAVAGKMKEMVADKSDDATLSRNPPLRGRVLGTLFYETSTRTACSFQAAVARLGGTFVSVDPASSSIKKGESLEDTVMSLLSYCDAVALRHPAKGAARAAVGVARRPVLNAGDGVGEHPTQALLDLYTIAAELGGEAGLSGLRGKVVALIGDLKHGRTVHSLAKLLARFGCVLRYVSPASLQMPRYIQDEVESAGESVQTEVEDIGVVLEEADVLYVTRVQKERFASREEFDRVNGSYKITPEVLSKVKPSSVLMHPLPRVGEIVEDCDLDPRAAYFKQMENGMYVRMALLALVFGKA 389
BLAST of jgi.p|Trimin1|347908 vs. uniprot
Match: K3X9Z5_GLOUD (Aspartate carbamoyltransferase n=1 Tax=Globisporangium ultimum (strain ATCC 200006 / CBS 805.95 / DAOM BR144) TaxID=431595 RepID=K3X9Z5_GLOUD) HSP 1 Score: 365 bits (938), Expect = 4.400e-123 Identity = 186/310 (60.00%), Postives = 243/310 (78.39%), Query Frame = 2
Query: 122 SWEGKCIISVKQFGLESLAKLFEVADEMKKLVKESGGDQRLQGRLLATLFFENSTRTCCSLQAAMLRLGGSVVSVNETTSSVKKGETLQDTIACLCSYCDVVALRHPQQGAAVQAVTATRRPLINAGDGVGEHPTQAILDVYTMVSELG---GVEGKVITLVGDLKNGRTVHSLARLLALYACELHFVAPPALRMPEDVVRDVTARGRATVTQSDAFDAVLPRADVLYVTRVQKERFEDAAEYEALRLVYRVTPEVLARAKRDMVLMHPLPRVGEIAEDCDDDPRAAYVRQMENGMVVRMALLALLLGKA 1042
SWEG+ I+S++QFG+ES ++ +VADEM+ +VK G L+G+LLA +FFE STRT CS QAAMLRLGG VV VNE++SS KKGETL DTI C+ Y DV+ LRHP +G+A A +AT++P++NAGDGVGEHPTQA+LD+YT+ +ELG + GKV+T+VGDLKNGRTVHSLARLLAL+ ++++VAP +L+MP + ++ ARG + +D D+V+ +DVLYVTRVQKERFE EY A++ + +T +A AK++MV+MHPLPRVGEIA + D DPRAAY RQMENGM VRMALLAL++GKA
Sbjct: 11 SWEGENILSIEQFGVESAKRVLQVADEMRAIVKSQGACDLLKGKLLANVFFEPSTRTSCSFQAAMLRLGGMVVPVNESSSSSKKGETLADTIRCMECYSDVIVLRHPVKGSAAVAASATKKPVLNAGDGVGEHPTQALLDLYTIYNELGRSLDLSGKVVTMVGDLKNGRTVHSLARLLALFNVKINYVAPESLKMPRSIFEELAARGISQHETTD-LDSVVNESDVLYVTRVQKERFESEDEYNAVKDSFVITLATIANAKKNMVVMHPLPRVGEIALEVDSDPRAAYFRQMENGMYVRMALLALVMGKA 319
BLAST of jgi.p|Trimin1|347908 vs. uniprot
Match: A0A5D6Y0H6_9STRA (Aspartate carbamoyltransferase n=1 Tax=Pythium brassicum TaxID=1485010 RepID=A0A5D6Y0H6_9STRA) HSP 1 Score: 364 bits (935), Expect = 1.170e-122 Identity = 190/311 (61.09%), Postives = 240/311 (77.17%), Query Frame = 2
Query: 122 SWEGKCIISVKQFGLESLAKLFEVADEMKKLVKESGGDQRLQGRLLATLFFENSTRTCCSLQAAMLRLGGSVVSVNETTSSVKKGETLQDTIACLCSYCDVVALRHPQQGAAVQAVTATRRPLINAGDGVGEHPTQAILDVYTMVSELG----GVEGKVITLVGDLKNGRTVHSLARLLALYACELHFVAPPALRMPEDVVRDVTARGRATVTQSDAFDAVLPRADVLYVTRVQKERFEDAAEYEALRLVYRVTPEVLARAKRDMVLMHPLPRVGEIAEDCDDDPRAAYVRQMENGMVVRMALLALLLGKA 1042
SW G I+SV+QF +ES ++ +VADEM+ +VK G L+G+LLA +FFE STRT CS QAAMLRLGG VV VNE++SS KKGETL DTI CL Y DV+ LRHP +G+A A ATR+P++NAGDGVGEHPTQA+LD+YT+ +ELG G+ GKV+T+VGDLKNGRTVHSLARLLAL+ +++VAP +L+MP +V ++ ARG T ++ DAV+ ++DVLYVTRVQKERFE Y A++ + +T +A AK+ +VL+HPLPRVGEIAE+ D DPRAAY RQMENGM VRMALLAL+LGKA
Sbjct: 8 SWAGANILSVEQFDVESAKRVLQVADEMRDVVKRQGASDLLKGKLLANVFFEPSTRTSCSFQAAMLRLGGLVVPVNESSSSSKKGETLGDTIRCLECYADVIVLRHPVKGSAAVAAAATRKPVLNAGDGVGEHPTQALLDLYTIYNELGRDLDGLAGKVVTMVGDLKNGRTVHSLARLLALFNVTINYVAPESLQMPRYIVDELAARG-VTQHETTDLDAVIKQSDVLYVTRVQKERFESEEAYNAVKDSFVITCATIADAKQSLVLLHPLPRVGEIAEEVDADPRAAYFRQMENGMYVRMALLALVLGKA 317
BLAST of jgi.p|Trimin1|347908 vs. uniprot
Match: A0A8K1CPG4_PYTOL (Uncharacterized protein n=1 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1CPG4_PYTOL) HSP 1 Score: 362 bits (930), Expect = 7.450e-122 Identity = 184/308 (59.74%), Postives = 242/308 (78.57%), Query Frame = 2
Query: 125 WEGKCIISVKQFGLESLAKLFEVADEMKKLVKESGGDQRLQGRLLATLFFENSTRTCCSLQAAMLRLGGSVVSVNETTSSVKKGETLQDTIACLCSYCDVVALRHPQQGAAVQAVTATRRPLINAGDGVGEHPTQAILDVYTMVSELG--GVEGKVITLVGDLKNGRTVHSLARLLALYACELHFVAPPALRMPEDVVRDVTARGRATVTQSDAFDAVLPRADVLYVTRVQKERFEDAAEYEALRLVYRVTPEVLARAKRDMVLMHPLPRVGEIAEDCDDDPRAAYVRQMENGMVVRMALLALLLGKA 1042
W G+ I+SV+QFG++S ++ VADEMK +VK G L+G+LLA +F+E STRT CS QAAMLRLGG VV VNE++SSVKKGETL DTI C+ Y DV+ LRHP +G+A A AT++P++NAGDGVGEHPTQA+LD+YT+ +ELG ++GKV+T+VGDLKNGRTVHSL++LLAL+ +++VAP +L+MP + ++ ARG +D ++V+ +DVLYVTRVQKERFE AEY+A++ + +T +A AK+ +V+MHPLPRVGEIAE+ D+DPRAAY RQMENGM VRMALLAL+LGKA
Sbjct: 14 WLGEDILSVEQFGVDSAKRVLRVADEMKAIVKSQGSTDILKGKLLANIFYEPSTRTSCSFQAAMLRLGGVVVPVNESSSSVKKGETLSDTIKCMECYSDVIVLRHPVKGSAAIAAGATKKPVLNAGDGVGEHPTQALLDLYTIYNELGTSDLQGKVVTMVGDLKNGRTVHSLSKLLALFGVSINYVAPESLKMPRYIYDELAARGVKQHETTD-LESVINESDVLYVTRVQKERFESEAEYDAVKDSFCITLSTIANAKQSLVIMHPLPRVGEIAEEVDNDPRAAYFRQMENGMYVRMALLALVLGKA 320
BLAST of jgi.p|Trimin1|347908 vs. uniprot
Match: A0A421FBB3_9STRA (Aspartate carbamoyltransferase n=5 Tax=Phytophthora TaxID=4783 RepID=A0A421FBB3_9STRA) HSP 1 Score: 355 bits (911), Expect = 6.080e-119 Identity = 184/313 (58.79%), Postives = 238/313 (76.04%), Query Frame = 2
Query: 113 DAASWEGKCIISVKQFGLESLAKLFEVADEMKKLVKESGGDQRLQGRLLATLFFENSTRTCCSLQAAMLRLGGSVVSVNETTSSVKKGETLQDTIACLCSYCDVVALRHPQQGAAVQAVTATRRPLINAGDGVGEHPTQAILDVYTMVSELGGVE---GKVITLVGDLKNGRTVHSLARLLALYACELHFVAPPALRMPEDVVRDVTARGRATVTQSDAFDAVLPRADVLYVTRVQKERFEDAAEYEALRLVYRVTPEVLARAKRDMVLMHPLPRVGEIAEDCDDDPRAAYVRQMENGMVVRMALLALLLGKA 1042
D +W+ + I+S+ QFG ES ++ +ADEMK +VK G + LQG+LLA +FFE STRT S Q+AMLRLGG VV VNET+SS +KGETL DTI CL Y DVV LRHP +G+A+ A +T++P++NAGDGVGEHPTQA+LD+YT+ SE G +E GKVIT+VGDLK GRTVHSL++LLA+Y ++V+P +L+MP V ++ A+G SD D+V+ ++DVLYVTRVQKERFE A+Y A++ + +T +A+AK M++MHPLPRVGEIAE+ D DPRAAY RQMENGM VRMALLAL+LGKA
Sbjct: 11 DVGAWKDENILSIAQFGKESAQRVLNLADEMKSMVKSQGANDLLQGKLLANVFFEPSTRTSSSFQSAMLRLGGKVVCVNETSSSSQKGETLGDTIRCLECYADVVVLRHPVKGSALVAAESTKKPVLNAGDGVGEHPTQAMLDLYTIYSEFGDLENLKGKVITMVGDLKYGRTVHSLSKLLAMYGTTFNYVSPESLKMPRYVYDELAAQGIQQNETSD-LDSVINQSDVLYVTRVQKERFESEADYNAVKDSFCITKATIAQAKPTMIIMHPLPRVGEIAEEVDSDPRAAYFRQMENGMYVRMALLALVLGKA 322
BLAST of jgi.p|Trimin1|347908 vs. uniprot
Match: A0A484EEU0_BRELC (Aspartate carbamoyltransferase n=1 Tax=Bremia lactucae TaxID=4779 RepID=A0A484EEU0_BRELC) HSP 1 Score: 352 bits (903), Expect = 9.590e-118 Identity = 178/310 (57.42%), Postives = 236/310 (76.13%), Query Frame = 2
Query: 122 SWEGKCIISVKQFGLESLAKLFEVADEMKKLVKESGGDQRLQGRLLATLFFENSTRTCCSLQAAMLRLGGSVVSVNETTSSVKKGETLQDTIACLCSYCDVVALRHPQQGAAVQAVTATRRPLINAGDGVGEHPTQAILDVYTMVSELGGVE---GKVITLVGDLKNGRTVHSLARLLALYACELHFVAPPALRMPEDVVRDVTARGRATVTQSDAFDAVLPRADVLYVTRVQKERFEDAAEYEALRLVYRVTPEVLARAKRDMVLMHPLPRVGEIAEDCDDDPRAAYVRQMENGMVVRMALLALLLGKA 1042
+WEG+ I+S+ QF ES ++ +VADEMK +VK G + L+G+LLA +F E STRT S QAAM RLGG V+ VNE++SS +KGE L DTI CL SY DV+ LRHP++G+A+ A AT +P++NAGDGVGEHPTQA+LD+YT+ SE G + GKV+T+VGDLKNGRTVHSL++LLA+Y + H+V+P +L+MP DV +++ +G +D D+V+ + DVLYVTRVQKERFE+ A+Y A++ + +T + + AK MV+MHP+PRVGEIA + D DPRAAY RQMENGM VRMALLAL+LGKA
Sbjct: 13 AWEGESILSIVQFSRESAQRVLDVADEMKNMVKTQGANDLLKGKLLANVFMEPSTRTSSSFQAAMKRLGGLVLCVNESSSSSQKGEILHDTIRCLASYADVIVLRHPKKGSALIAAEATTKPVLNAGDGVGEHPTQAMLDLYTIYSEFGDMATFTGKVVTMVGDLKNGRTVHSLSKLLAMYGAKFHYVSPESLKMPRDVYMELSEQGIVQNETTD-LDSVIKQTDVLYVTRVQKERFENEADYNAVKDSFCITRDTIKEAKSTMVIMHPMPRVGEIAREVDIDPRAAYFRQMENGMYVRMALLALVLGKA 321
BLAST of jgi.p|Trimin1|347908 vs. uniprot
Match: A0A0N7L525_PLAHL (Aspartate carbamoyltransferase n=1 Tax=Plasmopara halstedii TaxID=4781 RepID=A0A0N7L525_PLAHL) HSP 1 Score: 351 bits (901), Expect = 1.930e-117 Identity = 183/310 (59.03%), Postives = 237/310 (76.45%), Query Frame = 2
Query: 122 SWEGKCIISVKQFGLESLAKLFEVADEMKKLVKESGGDQRLQGRLLATLFFENSTRTCCSLQAAMLRLGGSVVSVNETTSSVKKGETLQDTIACLCSYCDVVALRHPQQGAAVQAVTATRRPLINAGDGVGEHPTQAILDVYTMVSELGGVE---GKVITLVGDLKNGRTVHSLARLLALYACELHFVAPPALRMPEDVVRDVTARGRATVTQSDAFDAVLPRADVLYVTRVQKERFEDAAEYEALRLVYRVTPEVLARAKRDMVLMHPLPRVGEIAEDCDDDPRAAYVRQMENGMVVRMALLALLLGKA 1042
+WEG+ I+SV QFG +S ++ VADEMK +VK G + L G+LLA +F E STRT S QAAMLRLGG VV VNE++SS +KGETL DTI CL Y DVV LRHP +G+A+ A AT++P++NAGDGVGEHPTQA+LD+YT+ SE G +E GKVIT+VGDLKNGRTVHSL++LLA+Y + ++V+P +L+MP V ++ ++ +D D+V+ DVLYVTRVQKERF+D +Y A++ +R+T +V+ AK +M++MHPLPRVGEIAE+ D DPRAAY RQMENGM VRMALLAL+LGKA
Sbjct: 13 AWEGESILSVVQFGKDSAQRVLSVADEMKTMVKTQGANDLLNGKLLANVFMEPSTRTSSSFQAAMLRLGGRVVCVNESSSSSQKGETLHDTIRCLECYADVVVLRHPVKGSALIAAEATKKPVLNAGDGVGEHPTQALLDLYTIYSEFGDLESLKGKVITMVGDLKNGRTVHSLSKLLAMYGPKFNYVSPESLKMPRYVYDELQSQCIKQNETTD-LDSVIHETDVLYVTRVQKERFDDEEDYIAVKDSFRITLDVIKDAKSEMIIMHPLPRVGEIAEEVDKDPRAAYFRQMENGMYVRMALLALVLGKA 321
BLAST of jgi.p|Trimin1|347908 vs. uniprot
Match: G4YYP3_PHYSP (Aspartate carbamoyltransferase n=4 Tax=Phytophthora TaxID=4783 RepID=G4YYP3_PHYSP) HSP 1 Score: 351 bits (901), Expect = 2.000e-117 Identity = 182/310 (58.71%), Postives = 236/310 (76.13%), Query Frame = 2
Query: 122 SWEGKCIISVKQFGLESLAKLFEVADEMKKLVKESGGDQRLQGRLLATLFFENSTRTCCSLQAAMLRLGGSVVSVNETTSSVKKGETLQDTIACLCSYCDVVALRHPQQGAAVQAVTATRRPLINAGDGVGEHPTQAILDVYTMVSELGGVE---GKVITLVGDLKNGRTVHSLARLLALYACELHFVAPPALRMPEDVVRDVTARGRATVTQSDAFDAVLPRADVLYVTRVQKERFEDAAEYEALRLVYRVTPEVLARAKRDMVLMHPLPRVGEIAEDCDDDPRAAYVRQMENGMVVRMALLALLLGKA 1042
SW+G+ I+S+ QFG +S ++ +VADEMK +VK G L+G+LLA +F E STRT S QAAM RLGG VV VNET+SS +KGETL DTI CL Y DVV LRHP +G+A+ A AT++P++NAGDGVGEHP+QA+LD+YT+ SELG +E GKV+T+VGDLK GRTVHSL+RLLA+Y ++V+P +L+MP V ++ A+G +D D+V+ + DVLYVTRVQKERFE A+Y A++ +R+T + + AK M++MHPLPRVGE+AE+ D DPRAAY RQMENGM VRMALLAL+LGKA
Sbjct: 14 SWQGENILSIAQFGKQSAQRVLDVADEMKNMVKTQGASDLLKGKLLANVFMEPSTRTSSSFQAAMKRLGGLVVCVNETSSSSQKGETLHDTIRCLECYADVVVLRHPIKGSALVAAEATKKPVLNAGDGVGEHPSQAMLDLYTIHSELGDLENLKGKVVTMVGDLKYGRTVHSLSRLLAMYGTTFNYVSPESLKMPRYVFDELAAQGIQQNETTD-LDSVINQTDVLYVTRVQKERFESEADYNAVKDSFRITLDTIKDAKSKMIIMHPLPRVGEVAEEVDTDPRAAYFRQMENGMYVRMALLALVLGKA 322 The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|347908 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
This mRNA is a part of the following gene feature(s):
The following exon feature(s) are a part of this mRNA:
The following five_prime_UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
spliced messenger RNA >mRNA_3362 ID=mRNA_3362|Name=jgi.p|Trimin1|347908|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=1045bp|location=Sequence derived from alignment at Contig_17:391236..392450+ (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon. CTTCACAGCACTTACTGACATTGTGTCAGCCCGGCAAGCCCGGCAGATGGback to top protein sequence of jgi.p|Trimin1|347908 >Trimin1|347908|estExt_Genemark1.C_Ctg_170055 ID=Trimin1|347908|estExt_Genemark1.C_Ctg_170055|Name=jgi.p|Trimin1|347908|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=333bp MEKYVPAPARAVFNLLQTNFTADAASWEGKCIISVKQFGLESLAKLFEVAback to top mRNA from alignment at Contig_17:391236..392450+ Legend: exonfive_prime_UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_3362 ID=mRNA_3362|Name=jgi.p|Trimin1|347908|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=1215bp|location=Sequence derived from alignment at Contig_17:391236..392450+ (Tribonema minus UTEX_B_3156 )back to top Coding sequence (CDS) from alignment at Contig_17:391236..392450+ >mRNA_3362 ID=mRNA_3362|Name=jgi.p|Trimin1|347908|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=999bp|location=Sequence derived from alignment at Contig_17:391236..392450+ (Tribonema minus UTEX_B_3156 )back to top |