mRNA_3349 (mRNA) Tribonema minus UTEX_B_3156

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
Namejgi.p|Trimin1|149013
Unique NamemRNA_3349
TypemRNA
OrganismTribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Homology
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BLAST of jgi.p|Trimin1|149013 vs. uniprot
Match: A0A835ZAN3_9STRA (Kinase-like domain-containing protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZAN3_9STRA)

HSP 1 Score: 253 bits (647), Expect = 2.010e-85
Identity = 126/126 (100.00%), Postives = 126/126 (100.00%), Query Frame = 1 
Query:    1 LAQVGRLGRGASAKVFKAVDVDTLKLVAVKVISFKRDSQAHRLIKHEVTALRSQRAPLLSKTFGTDAATTPCPHISRFYGCVVDKLRMQASIAMEYECCGSLEDWVKDGLPTPEPWLAHVAYSILQ 378
            LAQVGRLGRGASAKVFKAVDVDTLKLVAVKVISFKRDSQAHRLIKHEVTALRSQRAPLLSKTFGTDAATTPCPHISRFYGCVVDKLRMQASIAMEYECCGSLEDWVKDGLPTPEPWLAHVAYSILQ
Sbjct:    1 LAQVGRLGRGASAKVFKAVDVDTLKLVAVKVISFKRDSQAHRLIKHEVTALRSQRAPLLSKTFGTDAATTPCPHISRFYGCVVDKLRMQASIAMEYECCGSLEDWVKDGLPTPEPWLAHVAYSILQ 126
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BLAST of jgi.p|Trimin1|149013 vs. uniprot
Match: A0A835Z4M2_9STRA (Kinase-like domain-containing protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z4M2_9STRA)

HSP 1 Score: 196 bits (497), Expect = 1.460e-62
Identity = 95/124 (76.61%), Postives = 107/124 (86.29%), Query Frame = 1 
Query:    7 QVGRLGRGASAKVFKAVDVDTLKLVAVKVISFKRDSQAHRLIKHEVTALRSQRAPLLSKTFGTDAATTPCPHISRFYGCVVDKLRMQASIAMEYECCGSLEDWVKDGLPTPEPWLAHVAYSILQ 378
            QVG+LG+GASA VFKAVD+ TLKLVAVKVI   RDS A+RLI+HEVTALRSQRAPLL  TFG D++  PC +I++FYGC VDK   QASIAMEYECCGSLE+W +DGLPTPEPWLAHVAYSILQ
Sbjct:    2 QVGKLGKGASASVFKAVDMFTLKLVAVKVIKMDRDSHAYRLIRHEVTALRSQRAPLLLDTFGDDSSIAPCDYITQFYGCAVDKSSKQASIAMEYECCGSLEEWCRDGLPTPEPWLAHVAYSILQ 125
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BLAST of jgi.p|Trimin1|149013 vs. uniprot
Match: A0A836CD42_9STRA (Kinase-like domain-containing protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CD42_9STRA)

HSP 1 Score: 168 bits (425), Expect = 1.540e-51
Identity = 86/125 (68.80%), Postives = 98/125 (78.40%), Query Frame = 1 
Query:    7 QVGRLGRGASAKVFKAVDVDTLKLVAVKVISFK-RDSQAHRLIKHEVTALRSQRAPLLSKTFGTDAATTPCPHISRFYGCVVDKLRMQASIAMEYECCGSLEDWVKDGLPTPEPWLAHVAYSILQ 378
            QV +LG GAS  VFKAVDVDTL+LVAVK+I F  RD ++ RLI+ EV AL SQ AP+L +TFG  A  TPCP+IS FYG   DK RMQASIAMEY CCGSLE W KDGLP PEPW+AH+AYS+LQ
Sbjct:    7 QVAKLGSGASGSVFKAVDVDTLQLVAVKLIHFNSRDMKSARLIRREVAALSSQSAPMLLQTFG--AGMTPCPYISHFYGVKYDKTRMQASIAMEYACCGSLEAWSKDGLPVPEPWIAHIAYSVLQ 129
[Close]
BLAST of jgi.p|Trimin1|149013 vs. uniprot
Match: A0A836C8E3_9STRA (Kinase-like domain-containing protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836C8E3_9STRA)

HSP 1 Score: 88.2 bits (217), Expect = 1.080e-18
Identity = 56/121 (46.28%), Postives = 79/121 (65.29%), Query Frame = 1 
Query:   16 RLGRGASAKVFKAVDVDTLKLVAVKVISFKRDSQAHRLIKHEVTALRSQRAPLLSKTF-GTDAATTPCPHISRFYGCVVDKLRMQASIAMEYECCGSLEDWVKDGLPTPEPWLAHVAYSIL 375
            RLG+GAS+ V+ AV V TL +VA+K     R +     ++ E+ ALR+QR+PL+ ++F G D A+   PHI RFYG V+ + R  A +A+E    GSL+ ++  G P PEPWLAHVA+S L
Sbjct:    5 RLGKGASSSVYMAVCVRTLAVVALKESPI-RTAADRDAVRSELQALRTQRSPLMDRSFVGDDTAS---PHIVRFYGGVMLQERT-AVLAVELVAGGSLQAFIDRGSPAPEPWLAHVAHSCL 120
The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|149013 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 4
Match NameE-valueIdentityDescription
A0A835ZAN3_9STRA2.010e-85100.00Kinase-like domain-containing protein (Fragment) n... [more]
A0A835Z4M2_9STRA1.460e-6276.61Kinase-like domain-containing protein (Fragment) n... [more]
A0A836CD42_9STRA1.540e-5168.80Kinase-like domain-containing protein (Fragment) n... [more]
A0A836C8E3_9STRA1.080e-1846.28Kinase-like domain-containing protein (Fragment) n... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Contig_17contigContig_17:323087..323464 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Tribonema minus UTEX_B_31562021-06-17
Properties
Property NameValue
ProteomeIdTrimin1|149013|gw1.17.177.1
DescriptionProtein tyrosine kinase
COG categoryT
Max annot lvl121069|Pythiales
EggNOG OGsKOG0581@1|root,KOG0581@2759|Eukaryota,1MJ0R@121069|Pythiales
Evalue8.25e-13
Seed ortholog65071.PYU1_T000974
Hectar predicted targeting categorymitochondrion
TranscriptId149335
TrackFilteredModels1
ProteinId149013
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|149013gene_3349Tribonema minus UTEX_B_3156 geneContig_17 323087..323464 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
exon_3349_1exon_3349_1Tribonema minus UTEX_B_3156 exonContig_17 323087..323464 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
CDS_3349CDS_3349Tribonema minus UTEX_B_3156 CDSContig_17 323087..323464 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|149013Trimin1|149013|gw1.17.177.1Tribonema minus UTEX_B_3156 polypeptideContig_17 323087..323464 +


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>mRNA_3349 ID=mRNA_3349|Name=jgi.p|Trimin1|149013|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=378bp|location=Sequence derived from alignment at Contig_17:323087..323464+ (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon.  
CTTGCGCAGGTCGGCAGGCTGGGCCGAGGGGCCAGTGCCAAGGTCTTCAA
GGCCGTCGATGTGGACACCCTCAAGCTCGTTGCAGTCAAGGTCATCAGCT
TCAAAAGGGACTCGCAGGCGCACAGGCTCATCAAGCACGAGGTAACGGCC
CTGCGCTCCCAGCGGGCCCCTCTGCTGAGCAAGACTTTCGGCACGGACGC
TGCCACCACGCCCTGCCCCCACATCTCGAGATTCTATGGGTGCGTAGTGG
ATAAGCTCAGGATGCAGGCCAGCATAGCCATGGAGTACGAGTGCTGTGGG
AGCCTGGAGGACTGGGTGAAGGATGGGCTGCCGACGCCTGAGCCATGGCT
GGCGCACGTGGCATACTCCATCCTCCAG
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protein sequence of jgi.p|Trimin1|149013

>Trimin1|149013|gw1.17.177.1 ID=Trimin1|149013|gw1.17.177.1|Name=jgi.p|Trimin1|149013|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=126bp
LAQVGRLGRGASAKVFKAVDVDTLKLVAVKVISFKRDSQAHRLIKHEVTA
LRSQRAPLLSKTFGTDAATTPCPHISRFYGCVVDKLRMQASIAMEYECCG
SLEDWVKDGLPTPEPWLAHVAYSILQ
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mRNA from alignment at Contig_17:323087..323464+

Legend: exonpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_3349 ID=mRNA_3349|Name=jgi.p|Trimin1|149013|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=378bp|location=Sequence derived from alignment at Contig_17:323087..323464+ (Tribonema minus UTEX_B_3156 )
CTTGCGCAGGTCGGCAGGCTGGGCCGAGGGGCCAGTGCCAAGGTCTTCAA
GGCCGTCGATGTGGACACCCTCAAGCTCGTTGCAGTCAAGGTCATCAGCT
TCAAAAGGGACTCGCAGGCGCACAGGCTCATCAAGCACGAGGTAACGGCC
CTGCGCTCCCAGCGGGCCCCTCTGCTGAGCAAGACTTTCGGCACGGACGC
TGCCACCACGCCCTGCCCCCACATCTCGAGATTCTATGGGTGCGTAGTGG
ATAAGCTCAGGATGCAGGCCAGCATAGCCATGGAGTACGAGTGCTGTGGG
AGCCTGGAGGACTGGGTGAAGGATGGGCTGCCGACGCCTGAGCCATGGCT
GGCGCACGTGGCATACTCCATCCTCCAG
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Coding sequence (CDS) from alignment at Contig_17:323087..323464+

>mRNA_3349 ID=mRNA_3349|Name=jgi.p|Trimin1|149013|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=378bp|location=Sequence derived from alignment at Contig_17:323087..323464+ (Tribonema minus UTEX_B_3156 )
CTTGCGCAGGTCGGCAGGCTGGGCCGAGGGGCCAGTGCCAAGGTCTTCAA
GGCCGTCGATGTGGACACCCTCAAGCTCGTTGCAGTCAAGGTCATCAGCT
TCAAAAGGGACTCGCAGGCGCACAGGCTCATCAAGCACGAGGTAACGGCC
CTGCGCTCCCAGCGGGCCCCTCTGCTGAGCAAGACTTTCGGCACGGACGC
TGCCACCACGCCCTGCCCCCACATCTCGAGATTCTATGGGTGCGTAGTGG
ATAAGCTCAGGATGCAGGCCAGCATAGCCATGGAGTACGAGTGCTGTGGG
AGCCTGGAGGACTGGGTGAAGGATGGGCTGCCGACGCCTGAGCCATGGCT
GGCGCACGTGGCATACTCCATCCTCCAG
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