mRNA_3304 (mRNA) Tribonema minus UTEX_B_3156

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
Namejgi.p|Trimin1|347692
Unique NamemRNA_3304
TypemRNA
OrganismTribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Homology
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BLAST of jgi.p|Trimin1|347692 vs. uniprot
Match: A0A835ZAY7_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZAY7_9STRA)

HSP 1 Score: 449 bits (1156), Expect = 1.860e-159
Identity = 221/221 (100.00%), Postives = 221/221 (100.00%), Query Frame = 2 
Query:   77 MPVTATSSHQQPAVIMLQPFTRRHPLAKHSSWVTERQLLERFKGGDRGVDEVVMYQVVHSADDDQHQVEILEGLVTNMFAVGRDPNDDSEDSMAIWTAPYGILHGSMRALCIQACKRLGHRVIERAPVLRDVGTWTEMFLTGSGSMLRPVGVMHVPQNACDSDASLNMLPSGSATPMGQSPVDADQFIRSWEFEDTRVGAAIRAEMRRMLEDTAMPIEDLR 739
            MPVTATSSHQQPAVIMLQPFTRRHPLAKHSSWVTERQLLERFKGGDRGVDEVVMYQVVHSADDDQHQVEILEGLVTNMFAVGRDPNDDSEDSMAIWTAPYGILHGSMRALCIQACKRLGHRVIERAPVLRDVGTWTEMFLTGSGSMLRPVGVMHVPQNACDSDASLNMLPSGSATPMGQSPVDADQFIRSWEFEDTRVGAAIRAEMRRMLEDTAMPIEDLR
Sbjct:    1 MPVTATSSHQQPAVIMLQPFTRRHPLAKHSSWVTERQLLERFKGGDRGVDEVVMYQVVHSADDDQHQVEILEGLVTNMFAVGRDPNDDSEDSMAIWTAPYGILHGSMRALCIQACKRLGHRVIERAPVLRDVGTWTEMFLTGSGSMLRPVGVMHVPQNACDSDASLNMLPSGSATPMGQSPVDADQFIRSWEFEDTRVGAAIRAEMRRMLEDTAMPIEDLR 221
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BLAST of jgi.p|Trimin1|347692 vs. uniprot
Match: A0A1Z5K4M3_FISSO (Uncharacterized protein n=1 Tax=Fistulifera solaris TaxID=1519565 RepID=A0A1Z5K4M3_FISSO)

HSP 1 Score: 63.9 bits (154), Expect = 3.880e-8
Identity = 58/187 (31.02%), Postives = 91/187 (48.66%), Query Frame = 2 
Query:    2 WEPAHG-----GH-VATGDSLLVHCHVWPLPMPVTATSSHQQPAVIMLQPFTRRHPLAKHSSWVTERQLLER---FKGGDRGVDEVVMYQVVHSADDDQHQVEILEGLVTNMFAVGRDPNDDSEDSMAIWTAPYGILHGSMRALCIQACKRLGHRVIE-RAPVLRDV--GTWTEMFLTGSGSMLRPV 526
            W   +G     GH   +G +LL+   V P+ + V A    +Q  +    P     P  K +SW   R+ +ER   +K    GV EV+M   + SA D  HQ+E+LEGL +N+F V +D          + TA  G+L G  R L ++  +  G R+   ++ +L+D   G W E F+T S  ++ P+
Sbjct:  202 WSSTNGEITVRGHSCCSGSALLLDEPVQPIVVSVAAKQHGKQIDIDTAMPSRVDDPRHKVASWTRLRKQMERPETYK--PPGVSEVLM---LRSARD--HQLEVLEGLSSNVFVVYKDGT--------LRTATDGVLFGYARHLVLECAESCGLRLDPFKSIILQDAEEGLWKEAFITSSSRLIYPI 373
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BLAST of jgi.p|Trimin1|347692 vs. uniprot
Match: A0A7R9ZIP8_9STRA (Hypothetical protein n=1 Tax=Craspedostauros australis TaxID=1486917 RepID=A0A7R9ZIP8_9STRA)

HSP 1 Score: 57.0 bits (136), Expect = 1.680e-6
Identity = 51/173 (29.48%), Postives = 82/173 (47.40%), Query Frame = 2 
Query:  140 RRHPLAKHSSWVTERQLLER-FKGGDRGVDEVVMYQVVHSADDDQHQVEILEGLVTNMFAVGRDPNDDSEDSMAIWTAPYGILHGSMRALCIQACKRLGHRVIERAPVLRDVGTWTEMFLTGSGSMLRPVGVMHVPQNACDSDASLNMLPSGSATPMGQSPVDADQFIRSWEF 655
            + HP AK SSW  ER+ LE  FK  D    EV++ + +    DD   +E+LEGL TN+F V +D    + DS         +L+G MR   ++    +   V +    L + G W E+F+T S  +   V  ++   +    D S+ ++P  S +  G    DA    + ++F
Sbjct:    7 QNHPTAKLSSWCWERRPLETMFK--DENTGEVILTRKLCGDGDDN--LELLEGLTTNVFVVYKDGRLKTADSQL-------VLNGYMRHEILRLADHIDMPVDQSPIRLSERGEWKEVFVTSSIRIATSVDTLNT-IHGNHHDGSVTVVPLWSQSSEGGD--DASFVSKIFDF 165
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BLAST of jgi.p|Trimin1|347692 vs. uniprot
Match: A0A7S3PWQ5_9STRA (Hypothetical protein n=1 Tax=Chaetoceros debilis TaxID=122233 RepID=A0A7S3PWQ5_9STRA)

HSP 1 Score: 57.0 bits (136), Expect = 8.750e-6
Identity = 52/154 (33.77%), Postives = 81/154 (52.60%), Query Frame = 2 
Query:  149 PLAKHSSWVTERQLLE-RFKGGDRGVDEVVMY-----------QVVH---SADDDQHQVEILEGLVTNMFAVGRDPNDDSEDSMAIWTAPYGILHGSMRALCIQACKRLGHRVI----ERAPVLRDV--GTWTEMFLTGSGSMLRPVGVMHVPQ 547
            PLAK SSW + R+ LE +FK GD G  EV++            Q  H   S + D   +E+LEGL +N+F V +D +  +  +   +  P  +L+G  R L ++A +R G +V     E+A  ++D   G W E F T S  ++ P+G + +PQ
Sbjct:  279 PLAKLSSWCSIRRPLESQFKTGDTG--EVILTRKGKTQRSPSEQSDHDEMSIESDVANLELLEGLTSNLFVVYKDGSLRTASTNK-YDDPL-VLNGYARHLVLEAAERCGLKVEISTEEKAIKVQDGIDGLWAEAFFTSSIRLIIPIGKILLPQ 428
The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|347692 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 4
Match NameE-valueIdentityDescription
A0A835ZAY7_9STRA1.860e-159100.00Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A1Z5K4M3_FISSO3.880e-831.02Uncharacterized protein n=1 Tax=Fistulifera solari... [more]
A0A7R9ZIP8_9STRA1.680e-629.48Hypothetical protein n=1 Tax=Craspedostauros austr... [more]
A0A7S3PWQ5_9STRA8.750e-633.77Hypothetical protein n=1 Tax=Chaetoceros debilis T... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Contig_14contigContig_14:1472662..1474265 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Tribonema minus UTEX_B_31562021-06-17
Properties
Property NameValue
ProteomeIdTrimin1|347692|estExt_Genemark1.C_Ctg_140160
DescriptionAmino-transferase class IV
COG categoryS
Max annot lvl2759|Eukaryota
EggNOG OGs2CZHV@1|root,2SAEW@2759|Eukaryota
Evalue8.43e-14
Seed ortholog2880.D8LGW0
Hectar predicted targeting categoryother localisation
TranscriptId348014
TrackFilteredModels1
ProteinId347692
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|347692gene_3304Tribonema minus UTEX_B_3156 geneContig_14 1472662..1474265 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|347692Trimin1|347692|estExt_Genemark1.C_Ctg_140160Tribonema minus UTEX_B_3156 polypeptideContig_14 1472738..1474264 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
exon_3304_1exon_3304_1Tribonema minus UTEX_B_3156 exonContig_14 1472662..1472954 +
exon_3304_2exon_3304_2Tribonema minus UTEX_B_3156 exonContig_14 1473353..1473559 +
exon_3304_3exon_3304_3Tribonema minus UTEX_B_3156 exonContig_14 1474023..1474265 +


The following five_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
UTR5_3304UTR5_3304Tribonema minus UTEX_B_3156 five_prime_UTRContig_14 1472662..1472737 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
CDS_3304CDS_3304Tribonema minus UTEX_B_3156 CDSContig_14 1472738..1472954 +


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
UTR3_3304UTR3_3304Tribonema minus UTEX_B_3156 three_prime_UTRContig_14 1474265..1474265 +


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>mRNA_3304 ID=mRNA_3304|Name=jgi.p|Trimin1|347692|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=743bp|location=Sequence derived from alignment at Contig_14:1472662..1474265+ (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon.  
CTGGGAACCAGCTCATGGTGGGCATGTTGCCACTGGCGACAGTCTGCTGG
TGCACTGCCACGTGTGGCCACTGCCTATGCCAGTCACTGCGACATCATCA
CATCAGCAACCTGCTGTGATAATGCTTCAGCCATTTACGCGGCGACACCC
ACTGGCAAAGCACAGCAGCTGGGTCACGGAGAGACAGCTGTTGGAGCGGT
TTAAGGGCGGGGACAGGGGGGTGGATGAAGTGGTCATGTATCAGGTGGTC
CACAGCGCCGATGATGATCAGCATCAAGTCGAGATATTGGAAGGCCTGGT
GACCAACATGTTTGCAGTTGGCAGAGATCCCAATGACGACAGCGAGGACA
GCATGGCGATATGGACAGCCCCATATGGGATTCTGCACGGGTCAATGCGT
GCGCTGTGCATTCAAGCCTGCAAGCGGCTAGGCCACCGAGTCATCGAAAG
GGCACCGGTGCTAAGAGATGTGGGCACTTGGACCGAGATGTTCCTCACAG
GAAGCGGATCGATGTTGCGACCAGTAGGGGTCATGCACGTTCCACAAAAC
GCGTGTGATTCTGATGCTAGCCTCAACATGCTGCCAAGCGGAAGTGCTAC
GCCAATGGGGCAGTCTCCAGTGGACGCTGACCAATTTATAAGGTCATGGG
AATTTGAGGACACAAGAGTTGGGGCTGCGATACGAGCTGAGATGCGTCGC
ATGCTGGAAGACACAGCAATGCCAATAGAAGACTTGCGTTGAC
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protein sequence of jgi.p|Trimin1|347692

>Trimin1|347692|estExt_Genemark1.C_Ctg_140160 ID=Trimin1|347692|estExt_Genemark1.C_Ctg_140160|Name=jgi.p|Trimin1|347692|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=222bp
MPVTATSSHQQPAVIMLQPFTRRHPLAKHSSWVTERQLLERFKGGDRGVD
EVVMYQVVHSADDDQHQVEILEGLVTNMFAVGRDPNDDSEDSMAIWTAPY
GILHGSMRALCIQACKRLGHRVIERAPVLRDVGTWTEMFLTGSGSMLRPV
GVMHVPQNACDSDASLNMLPSGSATPMGQSPVDADQFIRSWEFEDTRVGA
AIRAEMRRMLEDTAMPIEDLR*
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mRNA from alignment at Contig_14:1472662..1474265+

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_3304 ID=mRNA_3304|Name=jgi.p|Trimin1|347692|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=1604bp|location=Sequence derived from alignment at Contig_14:1472662..1474265+ (Tribonema minus UTEX_B_3156 )
CTGGGAACCAGCTCATGGTGGGCATGTTGCCACTGGCGACAGTCTGCTGG
TGCACTGCCACGTGTGGCCACTGCCTATGCCAGTCACTGCGACATCATCA
CATCAGCAACCTGCTGTGATAATGCTTCAGCCATTTACGCGGCGACACCC
ACTGGCAAAGCACAGCAGCTGGGTCACGGAGAGACAGCTGTTGGAGCGGT
TTAAGGGCGGGGACAGGGGGGTGGATGAAGTGGTCATGTATCAGGTGGTC
CACAGCGCCGATGATGATCAGCATCAAGTCGAGATATTGGAAGGTGAGGG
CATATTCTCTCCTGATACTCTTCCATTATTGAAACAGGTCTTGGCATCTG
ATAACATGAAGGAAGGAGTGTGCTGAGACCACGCTGCTTGCCACAAGTTA
TTGCATTACTCAAAGTGTTGAGTTGCCAGAAATGTGCCAGCTGGTTGACC
TGGGCCAAGGAGCGCTCTGTCGCATACTTGGCATTCTCTGTTTGACACGC
ATGAAGCGTCAACATGTAGACTTCTGTACCCACCAACTGTGTGCCTGATG
ATGACTGCTGCCTGTGTACAACGTGCACGTTTTTGAAATGCCCTCTCTTT
GGCACCAGCAAAACGTTCCTTGCTTGTTGCATTGCTACTCACATCAAGTC
CGATAACAGGTCCTGAATGCGCCTATGTTCTGTCCCGCCAGGCCTGGTGA
CCAACATGTTTGCAGTTGGCAGAGATCCCAATGACGACAGCGAGGACAGC
ATGGCGATATGGACAGCCCCATATGGGATTCTGCACGGGTCAATGCGTGC
GCTGTGCATTCAAGCCTGCAAGCGGCTAGGCCACCGAGTCATCGAAAGGG
CACCGGTGCTAAGAGATGTGGGCACTTGGACCGAGATGTTCCTCACAGGT
GGGCCATGCTGTGCACAGGTCTAAGGTGTCACATTTGCCTCTGCACTCTT
GTTGAGCCTTGCATGTACCCAATTCGCCGTGTCAGCTAGTAAACGGTACC
GGATTGCAGCAGCACATTTCAGTATGCTAGGTCATGCATTACTTGTGACA
TTGGGGTATTTGATGCTCTCAGTCAATCTAATTTGACAGATTTGCAGACC
TCGTTAAGTCACCCCATGCCGTTTGAGTGTGACTTGGCAAGCATCAGGCA
ACAGCTGCACAGAAGTCTGTGTGATCACATTGCGCGCAGATGCAAGCAAG
GCAGTCTTTTTCATCAATTGTTTAAGGGAGACGAGTTCAACATGACTGGA
TAGTGCTGGCCCACGAAAACAAGCCATTACTGCAATATGTCTTTGAGTCG
CGATGAAACGCAATTTCTCACCATGTACATATCCGCAATGCCACGCGTGG
TGCTGTTGCAGGAAGCGGATCGATGTTGCGACCAGTAGGGGTCATGCACG
TTCCACAAAACGCGTGTGATTCTGATGCTAGCCTCAACATGCTGCCAAGC
GGAAGTGCTACGCCAATGGGGCAGTCTCCAGTGGACGCTGACCAATTTAT
AAGGTCATGGGAATTTGAGGACACAAGAGTTGGGGCTGCGATACGAGCTG
AGATGCGTCGCATGCTGGAAGACACAGCAATGCCAATAGAAGACTTGCGT
TGAC
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Coding sequence (CDS) from alignment at Contig_14:1472662..1474265+

>mRNA_3304 ID=mRNA_3304|Name=jgi.p|Trimin1|347692|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=666bp|location=Sequence derived from alignment at Contig_14:1472662..1474265+ (Tribonema minus UTEX_B_3156 )
ATGCCAGTCACTGCGACATCATCACATCAGCAACCTGCTGTGATAATGCT
TCAGCCATTTACGCGGCGACACCCACTGGCAAAGCACAGCAGCTGGGTCA
CGGAGAGACAGCTGTTGGAGCGGTTTAAGGGCGGGGACAGGGGGGTGGAT
GAAGTGGTCATGTATCAGGTGGTCCACAGCGCCGATGATGATCAGCATCA
AGTCGAGATATTGGAAGGCCTGGTGACCAACATGTTTGCAGTTGGCAGAG
ATCCCAATGACGACAGCGAGGACAGCATGGCGATATGGACAGCCCCATAT
GGGATTCTGCACGGGTCAATGCGTGCGCTGTGCATTCAAGCCTGCAAGCG
GCTAGGCCACCGAGTCATCGAAAGGGCACCGGTGCTAAGAGATGTGGGCA
CTTGGACCGAGATGTTCCTCACAGGAAGCGGATCGATGTTGCGACCAGTA
GGGGTCATGCACGTTCCACAAAACGCGTGTGATTCTGATGCTAGCCTCAA
CATGCTGCCAAGCGGAAGTGCTACGCCAATGGGGCAGTCTCCAGTGGACG
CTGACCAATTTATAAGGTCATGGGAATTTGAGGACACAAGAGTTGGGGCT
GCGATACGAGCTGAGATGCGTCGCATGCTGGAAGACACAGCAATGCCAAT
AGAAGACTTGCGTTGA
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