mRNA_328 (mRNA) Tribonema minus UTEX_B_3156
Overview
Homology
BLAST of jgi.p|Trimin1|157185 vs. uniprot
Match: A0A836CES3_9STRA (Uncharacterized protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CES3_9STRA) HSP 1 Score: 644 bits (1660), Expect = 1.720e-233 Identity = 318/318 (100.00%), Postives = 318/318 (100.00%), Query Frame = 1 Query: 1 MSAATSNQLIVPTGLVYTAWLTTFGCSVKLHQNTLVVGARNYSPSAAAVAAGRVYVYVKVAGGWQLQQEVGSSGPGGGYLFGDMVSVYGDYMATTETGYPLNSGRGYISIFKRTGTVWSLYQGRFTSGGALRGYVGSGACALNGTSLLIGSPVYPTGGVKCGLVAVWVNNGTAYALQQYLSPTTYLTINGRFGQSGAIDGDRIAIGSPATPNGYASINHGTLYFYTRSGATWTLAQTFEPPGVTGTDWGELGTSVSMSSTYAVAGAPSRTLNGIDCGSVCVYKWSGTQWAHVAELPHPLLTSGAKFGTSVTTAGNRII 954 MSAATSNQLIVPTGLVYTAWLTTFGCSVKLHQNTLVVGARNYSPSAAAVAAGRVYVYVKVAGGWQLQQEVGSSGPGGGYLFGDMVSVYGDYMATTETGYPLNSGRGYISIFKRTGTVWSLYQGRFTSGGALRGYVGSGACALNGTSLLIGSPVYPTGGVKCGLVAVWVNNGTAYALQQYLSPTTYLTINGRFGQSGAIDGDRIAIGSPATPNGYASINHGTLYFYTRSGATWTLAQTFEPPGVTGTDWGELGTSVSMSSTYAVAGAPSRTLNGIDCGSVCVYKWSGTQWAHVAELPHPLLTSGAKFGTSVTTAGNRII Sbjct: 1 MSAATSNQLIVPTGLVYTAWLTTFGCSVKLHQNTLVVGARNYSPSAAAVAAGRVYVYVKVAGGWQLQQEVGSSGPGGGYLFGDMVSVYGDYMATTETGYPLNSGRGYISIFKRTGTVWSLYQGRFTSGGALRGYVGSGACALNGTSLLIGSPVYPTGGVKCGLVAVWVNNGTAYALQQYLSPTTYLTINGRFGQSGAIDGDRIAIGSPATPNGYASINHGTLYFYTRSGATWTLAQTFEPPGVTGTDWGELGTSVSMSSTYAVAGAPSRTLNGIDCGSVCVYKWSGTQWAHVAELPHPLLTSGAKFGTSVTTAGNRII 318
BLAST of jgi.p|Trimin1|157185 vs. uniprot
Match: A0A7Y2GIH8_9BACT (Uncharacterized protein n=1 Tax=Pyrinomonadaceae bacterium TaxID=2283092 RepID=A0A7Y2GIH8_9BACT) HSP 1 Score: 104 bits (259), Expect = 4.910e-21 Identity = 85/276 (30.80%), Postives = 128/276 (46.38%), Query Frame = 1 Query: 154 GRVYVYVKVAGGWQLQQEVGSSGPGGGYLFGDMVSVYGDYMATTETGYPLNSGRGYIS----IFKRTGTVWSLYQGRFTSGGALRGYVGSGACALNGTSLLIGSPVYPTGGVKCGLVAVWVNNGTAYALQQYLSPTTYLTINGRFGQSGAIDGDRIAIGSPATPNGYASINHGTLYFYTRSGATWTL-AQTF----EPPGVTGTDWGELGTSVSMSSTYAVAGAPSRTLNGIDCGSVCVYKWSGTQWAHVAELPHPLLTSGAKFGTSVTTAGNRII 954 G +Y + + + GW ++++ G GG FG + + GD T G P N G +S +F+R+G W S G+ G+ A A++G ++ +G+ G G V V+ +G A+ QQ + + + RFG S A+ GD + IGSP A N G +YFY +WT +++F EP G E GTS+++S +Y VAGAP + G VY QW A+L G KFG SV+ G I+ Sbjct: 480 GSIYEFTRTSNGWYPREKIYLFGSTGGEQFGSALDLEGD---TLVVGAPSNDPNGNLSGSAHVFRRSGQTWQFPAHLLPSDGSEGARFGN-AVAIDGNTIAVGAFTDGEAGTGAGAVYVFTFDGFAWIEQQKIIGSD-TEADDRFGTSLALQGDTLLIGSPRDDQ--AGNNAGAVYFYELDNGSWTFRSKSFSANQEPSG-------EFGTSLAISGSYFVAGAPGENIVAGLEGGAHVYVKGTNQWFRHADLFPSQADIGQKFGESVSIRGGYIV 741
BLAST of jgi.p|Trimin1|157185 vs. uniprot
Match: A0A0K1ED12_CHOCO (Uncharacterized protein n=1 Tax=Chondromyces crocatus TaxID=52 RepID=A0A0K1ED12_CHOCO) HSP 1 Score: 103 bits (256), Expect = 1.030e-20 Identity = 86/299 (28.76%), Postives = 138/299 (46.15%), Query Frame = 1 Query: 67 TFGCSVKLHQNTLVVGARNYSPSAAAVAAGRVYVYVKVAGGWQLQQEVGSSGPGGGYLFGDMVSVYGDYMATTETG---YPLNSGRGYISIFKRTGTVWSLYQGRFTSGGALRGYVGSGACALNGTSLLIGSPVYPTGGVKCGLVAVWVNNGTAYALQQYLSPTTYLTINGRFGQSGAIDGDRIAIGSPATPNGYASINHGTLYFYTRSGATWTLAQTFEPPGVTGTDWGELGTSVSMSSTYAVAGAPSRTLNGIDCGSVCVYKWSGTQWAHVAELPHPLLTSGAKFGTSVTTAGNRII 954 TFG +V + +T+VVG + A V G YV+V+ W Q ++ +S FG VS+ GD +A G NSG Y+ F R+G W+ Q + + G+ A A+ G ++L+GSP G G V+V +G +A Q L PT + FG++ A+ GD A+G+ +N G +Y +TR+GA+W E D G SV + VAGA + +G + GS V+ + W A++ + +FG +++ AG+ ++ Sbjct: 115 TFGRAVAIDGDTIVVGVVYHD--AGFVDTGAAYVFVRAGATWTQQAKLVASDRAANDFFGTAVSISGDTIAVGAEGDRDLGTNSGSAYV--FTRSGGAWTQ-QAKLLAADGAAGHKFGMAIAVEGDTVLVGSPQDDAQGSASGSAYVFVRSGATWAQQAKLLPTGGAQSD-FFGRALALSGDTAAVGALYADRP-GMLNTGAVYAFTRTGASWAQQGKLEAADGDVNDL--FGESVDIEGDTIVAGATNDRDHGPNTGSAYVFTRTAGSWTQKAKMSASDAAADRRFGNAISIAGDAVV 404
BLAST of jgi.p|Trimin1|157185 vs. uniprot
Match: A0A2G2QSQ2_9PROT (Uncharacterized protein n=1 Tax=Robiginitomaculum sp. TaxID=2030823 RepID=A0A2G2QSQ2_9PROT) HSP 1 Score: 92.8 bits (229), Expect = 1.690e-17 Identity = 87/297 (29.29%), Postives = 134/297 (45.12%), Query Frame = 1 Query: 70 FGCSVKLHQNTLVVGARNYSPSAAAVAAGRVYVYVKVAGGWQLQQEVGSSGPGGGYLFGDMVSVYGDYMAT---TETGYPLNSGRGYISIFKRTGTVWSLYQGRFTSGGALRGYVGSGACALNGTSLLIGSPVYPTGGVKCGLVAVWVNNGTAYALQQYLSPTTYLTINGRFGQSGAIDGDRIAIGSPATPNGYASINHGTLYFYTRSGATWTLAQTFEPPGVTGTDWGELGTSVSMSSTYAVAGA--PSRTLNGIDCGSVCVYKWSGTQWAHVAELPHPLLTSGAKFGTSVTTAGN 945 FG SV L +T V+GA V AG YV+ + W+ Q ++ + FG V + GD + + NSG +I I R+ VW +Q + T+ +G + AL+G +L+IG+P G G V V+ G ++ Q L+ FG S A+ GD I +G A + + N G +Y YTRSG +W+ Q + G++ G V++S A+ A + G+D GS V+ SGT W+ +L P + +FG SV G+ Sbjct: 51 FGYSVALSDDTAVIGAFKDDDQILGVDAGSAYVFTRSGKTWRQQAKLTAIDGATADTFGGNVVLSGDTIVVGVMRDDDMGENSGSAHIYI--RSEGVWH-HQAKITAADGAKGDAFGQSLALDGNTLIIGTPRDDDNGKDTGSVYVFTRIGASWHQQAKLTADDGAA-GDLFGISVALSGDTILVG--ADLHDEIAPNAGAVYVYTRSGNSWS--QQAKLTAADGSETDIFGVRVALSGDTALISARRDDDDIMGVDAGSAYVFVRSGTSWSQQEKLTAPDGVADDRFGRSVALFGD 339
BLAST of jgi.p|Trimin1|157185 vs. uniprot
Match: A0A2D5EQ07_9DELT (TNFR-Cys domain-containing protein n=2 Tax=Myxococcales TaxID=29 RepID=A0A2D5EQ07_9DELT) HSP 1 Score: 91.7 bits (226), Expect = 1.010e-16 Identity = 85/293 (29.01%), Postives = 140/293 (47.78%), Query Frame = 1 Query: 70 FGCSVKLHQNTLVVGARNYSPSAAAVAAGRVYVYVKVAGGWQLQQEVGSSGPGGGYLFGDMVSVYGDYM---ATTETGYPLNSGRGYISIFKRTGTVWSLYQGRFTSGGALRGYVGSGACALNGTSLLIGSPVYPTGGVKCGLVAVWVNNGTAYALQQYLSPTTYLTINGRFGQSGAIDGDRIAIGSPATPNGYASINHGTLYFYTRSGATWTLAQTFEPPGVTGTDWG---ELGTSVSMSSTYAVAGAPSRTLNGIDCGSVCVYKWSGTQWAHVAELPHPLLTSGAKFGTSV 930 FG SV L + ++GA ++G YV+ +V G W Q+++ + G FG V++ GD A + NSG Y+ F R+G W Q + + + G + A A++G +++IG+ GG+ G V+V +G + QQ L+ + + RFG S A+ GD + +G P +A + G +Y + R + W+ E +TG+D G +LG SV++S T A+AG+P + G+ V+ SG W+ +L T+ A G SV Sbjct: 407 FGTSVALDGDFALIGAPQDDDI--GFSSGAAYVFARVGGAWAEQRKLRAGDEAAGDEFGWSVALSGDTALIGARYDDDAGTNSGSAYV--FVRSGGGWREEQ-KLAASDSTPGDIFGFAVAIDGDTVVIGADGDDDGGMSSGAAYVFVRSGGTWTEQQKLTAGDGGSFD-RFGTSVAVSGDTVLVGMPGDDGLHA--DSGAVYVFARDDSLWS-----ERVKLTGSDGGSAAQLGWSVALSGTSALAGSPRADAATRNSGAAYVFVSSGGVWSEEVKLDAGAATAWA-LGESV 685
BLAST of jgi.p|Trimin1|157185 vs. uniprot
Match: A0A2E2B0K9_9BACT (Uncharacterized protein n=1 Tax=Phycisphaeraceae bacterium TaxID=2026777 RepID=A0A2E2B0K9_9BACT) HSP 1 Score: 89.7 bits (221), Expect = 4.880e-16 Identity = 87/299 (29.10%), Postives = 134/299 (44.82%), Query Frame = 1 Query: 73 GCSVKLHQNTLVVGARNYSPSAAAVAAGRVYVYVKVAGGWQ-LQQEVGSSGPGGGYLFGDMVSVYGDYM---ATTETGYPLNSGRGYISIFKRTGTVWSLYQGRFTSGGALRGYVGSGACALNGTSLLIGSPVYPTGGVKCGLVAVWVNNGTAYALQQYLSPTTYLTINGRFGQSGAIDGDRIAIGSPATPN-GYASINHGTLYFYTRSGATWTLAQTFEPPGVTGTDWGELGTSVSMSSTYAVAGAPSRTLNGIDCGSVCVYKWSGTQWAHVAELPHPLLTSGAKFGTSVTTAGNRII 954 G +V + +VVGA AAG VY+Y WQ + + + S G G Y FG V++ GD + A TG + G + IF G+ W+ F S G G + ++G +L+G+ G G ++ N Q + + N R+GQS A+DGDRI IG+ + + G + G Y Y G+ W + G +G SVS+S+ GAP + NG + G+V VY W G W + +L + + T+G FG SV + +R++ Sbjct: 1894 GYAVAVSSFRMVVGAPYDDDDTNGTAAGTVYIYEWDGQDWQQVDRLIASDGIAGDY-FGYSVAIDGDRIVVGAINATG-DTTTDTGAVYIFDWDGSDWNQTDKLFASNGVASDNFGV-SVDVDGLRVLVGANQT---GALIGSAYLYEWNDVTSQWQVTIITASDRLNNDRYGQSVAMDGDRILIGAWSDDHMGGLGGDAGAAYLYEWDGSAWNETKFAAADSTPGAYYGY---SVSLSADRLAIGAPRDSENGTNAGAVYVYDWDGEHW-NETKLGNSIATAGDLFGYSVGVSMDRLV 2182
BLAST of jgi.p|Trimin1|157185 vs. uniprot
Match: A0A445N0M2_9DELT (PASTA domain-containing protein n=1 Tax=uncultured Desulfobacterium sp. TaxID=201089 RepID=A0A445N0M2_9DELT) HSP 1 Score: 89.7 bits (221), Expect = 5.030e-16 Identity = 78/296 (26.35%), Postives = 128/296 (43.24%), Query Frame = 1 Query: 70 FGCSVKLHQNTLVVGARNYSPSAAAVAAGRVYVYVKVAGGWQLQQEVGSSGPGGGYLFGDMVSVYGDYMATTETGYPLN-SGRGYISIFKRTGTVWSLYQGRFTSGGALRGYVGSGACALNGTSLLIGSPVYPTGGVKCGLVAVWVNNGTAYALQQYLSPTTYLTINGRFGQSGAIDGDRIAIGSPATPNGYASINHGTLYFYTRSGATWTLAQTFEPPGVTGTDWGELGTSVSMSSTYAVAGAPSRTLNGIDCGSVCVYKWSGTQWAHVAELPHPLLTSGAKFGTSVTTAGNRII 954 FG SV + + +VGA + +G Y++ + W Q ++ +S G LFG+ VS+ GDY G S G IF R G+VW L Q + T+ A + +++G ++G+ + G G ++ G+ + Q L P+ + G S +I+GD + IG+ +G + N G+ Y + R G W D+ G SVSM+ YA+ GA + G+ GS ++K G W + ++ + FG SV+ N I Sbjct: 2688 FGTSVSISGDYAIVGASGDDDGGSL--SGSAYIFKREGPIWVEQAKLTASDAAAGDLFGNSVSINGDYAIIGAYGNDDGGSSSGSAYIFIREGSVW-LEQAKLTASDAAENDYFGYSVSIDGEVAVVGAHLNDDKGANSGSAYIFKREGSTWTEQGKLIPSD-AAADDYLGYSVSINGDYLIIGAYRNDDGGS--NSGSAYIFKRDGLIWAEQAKLTASDAAAGDY--FGLSVSMNGDYAIVGAYADDDKGLSSGSAYLFKRDGLIWTQIKKITAGNGAASDYFGRSVSLTNNYAI 2975
BLAST of jgi.p|Trimin1|157185 vs. uniprot
Match: A0A445MYM4_9DELT (PASTA domain-containing protein n=1 Tax=uncultured Desulfobacterium sp. TaxID=201089 RepID=A0A445MYM4_9DELT) HSP 1 Score: 89.0 bits (219), Expect = 9.090e-16 Identity = 80/298 (26.85%), Postives = 130/298 (43.62%), Query Frame = 1 Query: 70 FGCSVKLHQNTLVVGARNYSPSAAAVAAGRVYVYVKVAGGWQLQQEVGSSGPGGGYLFGDMVSVYGDYM---ATTETGYPLNSGRGYISIFKRTGTVWSLYQGRFTSGGALRGYVGSGACALNGTSLLIGSPVYPTGGVKCGLVAVWVNNGTAYALQQYLSPTTYLTINGRFGQSGAIDGDRIAIGSPATPNGYASINHGTLYFYTRSGATWTLAQTFEPPGVTGTDWGELGTSVSMSSTYAVAGAPSRTLNGIDCGSVCVYKWSGTQWAHVAELPHPLLTSGAKFGTSVTTAGNRII 954 FG SV + + +VGA + +G Y++ + W Q ++ S G LFG+ VS+ GDY A + +SG YI FKR G++W L Q + T+ A + +++G ++G+ + G G ++ GT + Q L P+ + FG +I+GD IG+ +G + N G+ Y + R G+ W D+ G SVS++ YAV GA G GS ++K + W + ++ + FG SV+ A N I Sbjct: 2519 FGISVSISGDYAIVGASGDDDGGSL--SGSAYIFKREGLIWAQQAKLTGSDAAAGDLFGNSVSINGDYAIIGAYSNDDGGADSGSAYI--FKREGSIW-LEQAKITASDAAASDYFGYSVSIDGEVAVVGAHLNDDKGANSGSAYIFRREGTIWTEQAKLIPSD-AAADDYFGYPVSINGDCAIIGAYRNDDGGS--NSGSAYIFKRDGSIWAEQAKLTASDAASYDY--FGLSVSINGDYAVVGAYGDDDKGSSSGSAYLFKREVSAWTQIKKITAGNGAASDYFGRSVSLANNYAI 2806
BLAST of jgi.p|Trimin1|157185 vs. uniprot
Match: A0A2N3FJ04_9ACTN (Uncharacterized protein n=1 Tax=Actinobacteria bacterium HGW-Actinobacteria-6 TaxID=2013651 RepID=A0A2N3FJ04_9ACTN) HSP 1 Score: 86.3 bits (212), Expect = 4.500e-15 Identity = 62/175 (35.43%), Postives = 93/175 (53.14%), Query Frame = 1 Query: 421 ALNGTSLLIGSPVYPTGGVKCGLVAVWVNNGTAYALQQYLSPTTYLTINGRFGQSGAIDGDRIAIGSPATPNGYASINHGTLYFYTRSGATWTLAQTFEPPGVTGTDWGELGTSVSMSSTYAVAGAPSRTLNGIDCGSVCVYKWSGTQWAHVAELPHPLLTSGAKFGTSVTTAGN 945 A++G +LL+G+P G G V V+V ++ QQ L+P+T + RFG S AI+GD IG+P G + G +Y +TRSG WTL T P + G+LGTSV++S T +AGAP + GS V+ SG+ W++ L P +G + G + +G+ Sbjct: 60 AIDGDTLLVGAPAV---GDDVGAVYVYVRADGMWSWQQTLAPSTVAS-GDRFGYSVAIEGDTAVIGAPGRA-GAKGDDAGLVYIFTRSGTVWTLQAT--PQTLPEQIGGQLGTSVAISGTTVLAGAPG--IGTDSAGSAWVFTGSGSAWSNTGVLFDPDGAAGDRLGVCLDVSGD 225
BLAST of jgi.p|Trimin1|157185 vs. uniprot
Match: A0A835ZM52_9STRA (Uncharacterized protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZM52_9STRA) HSP 1 Score: 84.3 bits (207), Expect = 2.470e-14 Identity = 90/313 (28.75%), Postives = 138/313 (44.09%), Query Frame = 1 Query: 70 FGCSVKLHQNTLVVGARNYSPSAAAVAAGRVYVYVKVAGG-WQLQQEVGSSGPGGGYLFGDMVSVYGDYMATTETGYPLNSGR-----GYISIFKRTGTVWSLYQGRFTSGGALRGYVGSGACALNGTSLLIGSPVYPTGGVKCGLVAVWVN-----NGTAYALQQYLSPTTYLTINGRFGQSGAIDGDRIAIGSPATPNGYASINHGTLYFYTRSGATWTLAQTFEPPGVTGTDWGELGTSVSMSSTYAVAGA-------PSRTLNGIDCGSVCVYKWSGTQWAHVAELPHPLLTSGAKFGTSVTTAGNRII 954 FG V + +T+VVG S +A ++YV+ + G W Q + +S G FG V++ GDY+ + + G +F R+G+ WS S + GY +CA++G ++ G+ G G ++V GT ++ L+ TT TIN +FG + AI GD + +G+ Y+S +Y +G TW Q G+ G SV++ Y VAGA PS N CG+ V+ SG+ WA A+L L + A FG SV +G+ II Sbjct: 70 FGGYVAISGDTVVVGT-----SFTGIA--KIYVWYRSTGATWTQQGPLTASDGSSGDSFGSSVAIDGDYIVAGARLWDRKTPSAMTDCGCAYVFVRSGSTWSQQAQLIASDVDVLGY----SCAVDGQYMIAGAYNKTVGVASAGAAYIYVRPDMTATGT-WSFTTKLTATTP-TINEQFGNTVAISGDTVVVGTM-----YSSGIAKVYVWYRSTGTTWV--QQGPLTASDGSSGDRFGYSVAIDGNYIVAGAYVWSRKTPSAITN---CGTAYVFMRSGSTWAQQAQLFASDLMASAYFGLSVAVSGSSII 359 The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|157185 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
This mRNA is a part of the following gene feature(s):
The following exon feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
spliced messenger RNA >mRNA_328 ID=mRNA_328|Name=jgi.p|Trimin1|157185|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=954bp|location=Sequence derived from alignment at Contig_3:942766..943719- (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon. ATGAGCGCCGCGACGTCGAACCAGCTCATCGTCCCCACGGGGCTCGTCTAback to top protein sequence of jgi.p|Trimin1|157185 >Trimin1|157185|e_gw1.3.418.1 ID=Trimin1|157185|e_gw1.3.418.1|Name=jgi.p|Trimin1|157185|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=318bp MSAATSNQLIVPTGLVYTAWLTTFGCSVKLHQNTLVVGARNYSPSAAAVAback to top mRNA from alignment at Contig_3:942766..943719- Legend: exonpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_328 ID=mRNA_328|Name=jgi.p|Trimin1|157185|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=954bp|location=Sequence derived from alignment at Contig_3:942766..943719- (Tribonema minus UTEX_B_3156 )back to top Coding sequence (CDS) from alignment at Contig_3:942766..943719- >mRNA_328 ID=mRNA_328|Name=jgi.p|Trimin1|157185|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=954bp|location=Sequence derived from alignment at Contig_3:942766..943719- (Tribonema minus UTEX_B_3156 )back to top |