mRNA_328 (mRNA) Tribonema minus UTEX_B_3156

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
Namejgi.p|Trimin1|157185
Unique NamemRNA_328
TypemRNA
OrganismTribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Homology
BLAST of jgi.p|Trimin1|157185 vs. uniprot
Match: A0A836CES3_9STRA (Uncharacterized protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CES3_9STRA)

HSP 1 Score: 644 bits (1660), Expect = 1.720e-233
Identity = 318/318 (100.00%), Postives = 318/318 (100.00%), Query Frame = 1
Query:    1 MSAATSNQLIVPTGLVYTAWLTTFGCSVKLHQNTLVVGARNYSPSAAAVAAGRVYVYVKVAGGWQLQQEVGSSGPGGGYLFGDMVSVYGDYMATTETGYPLNSGRGYISIFKRTGTVWSLYQGRFTSGGALRGYVGSGACALNGTSLLIGSPVYPTGGVKCGLVAVWVNNGTAYALQQYLSPTTYLTINGRFGQSGAIDGDRIAIGSPATPNGYASINHGTLYFYTRSGATWTLAQTFEPPGVTGTDWGELGTSVSMSSTYAVAGAPSRTLNGIDCGSVCVYKWSGTQWAHVAELPHPLLTSGAKFGTSVTTAGNRII 954
            MSAATSNQLIVPTGLVYTAWLTTFGCSVKLHQNTLVVGARNYSPSAAAVAAGRVYVYVKVAGGWQLQQEVGSSGPGGGYLFGDMVSVYGDYMATTETGYPLNSGRGYISIFKRTGTVWSLYQGRFTSGGALRGYVGSGACALNGTSLLIGSPVYPTGGVKCGLVAVWVNNGTAYALQQYLSPTTYLTINGRFGQSGAIDGDRIAIGSPATPNGYASINHGTLYFYTRSGATWTLAQTFEPPGVTGTDWGELGTSVSMSSTYAVAGAPSRTLNGIDCGSVCVYKWSGTQWAHVAELPHPLLTSGAKFGTSVTTAGNRII
Sbjct:    1 MSAATSNQLIVPTGLVYTAWLTTFGCSVKLHQNTLVVGARNYSPSAAAVAAGRVYVYVKVAGGWQLQQEVGSSGPGGGYLFGDMVSVYGDYMATTETGYPLNSGRGYISIFKRTGTVWSLYQGRFTSGGALRGYVGSGACALNGTSLLIGSPVYPTGGVKCGLVAVWVNNGTAYALQQYLSPTTYLTINGRFGQSGAIDGDRIAIGSPATPNGYASINHGTLYFYTRSGATWTLAQTFEPPGVTGTDWGELGTSVSMSSTYAVAGAPSRTLNGIDCGSVCVYKWSGTQWAHVAELPHPLLTSGAKFGTSVTTAGNRII 318          
BLAST of jgi.p|Trimin1|157185 vs. uniprot
Match: A0A7Y2GIH8_9BACT (Uncharacterized protein n=1 Tax=Pyrinomonadaceae bacterium TaxID=2283092 RepID=A0A7Y2GIH8_9BACT)

HSP 1 Score: 104 bits (259), Expect = 4.910e-21
Identity = 85/276 (30.80%), Postives = 128/276 (46.38%), Query Frame = 1
Query:  154 GRVYVYVKVAGGWQLQQEVGSSGPGGGYLFGDMVSVYGDYMATTETGYPLNSGRGYIS----IFKRTGTVWSLYQGRFTSGGALRGYVGSGACALNGTSLLIGSPVYPTGGVKCGLVAVWVNNGTAYALQQYLSPTTYLTINGRFGQSGAIDGDRIAIGSPATPNGYASINHGTLYFYTRSGATWTL-AQTF----EPPGVTGTDWGELGTSVSMSSTYAVAGAPSRTLNGIDCGSVCVYKWSGTQWAHVAELPHPLLTSGAKFGTSVTTAGNRII 954
            G +Y + + + GW  ++++   G  GG  FG  + + GD   T   G P N   G +S    +F+R+G  W        S G+     G+ A A++G ++ +G+      G   G V V+  +G A+  QQ +  +     + RFG S A+ GD + IGSP      A  N G +YFY     +WT  +++F    EP G       E GTS+++S +Y VAGAP   +     G   VY     QW   A+L       G KFG SV+  G  I+
Sbjct:  480 GSIYEFTRTSNGWYPREKIYLFGSTGGEQFGSALDLEGD---TLVVGAPSNDPNGNLSGSAHVFRRSGQTWQFPAHLLPSDGSEGARFGN-AVAIDGNTIAVGAFTDGEAGTGAGAVYVFTFDGFAWIEQQKIIGSD-TEADDRFGTSLALQGDTLLIGSPRDDQ--AGNNAGAVYFYELDNGSWTFRSKSFSANQEPSG-------EFGTSLAISGSYFVAGAPGENIVAGLEGGAHVYVKGTNQWFRHADLFPSQADIGQKFGESVSIRGGYIV 741          
BLAST of jgi.p|Trimin1|157185 vs. uniprot
Match: A0A0K1ED12_CHOCO (Uncharacterized protein n=1 Tax=Chondromyces crocatus TaxID=52 RepID=A0A0K1ED12_CHOCO)

HSP 1 Score: 103 bits (256), Expect = 1.030e-20
Identity = 86/299 (28.76%), Postives = 138/299 (46.15%), Query Frame = 1
Query:   67 TFGCSVKLHQNTLVVGARNYSPSAAAVAAGRVYVYVKVAGGWQLQQEVGSSGPGGGYLFGDMVSVYGDYMATTETG---YPLNSGRGYISIFKRTGTVWSLYQGRFTSGGALRGYVGSGACALNGTSLLIGSPVYPTGGVKCGLVAVWVNNGTAYALQQYLSPTTYLTINGRFGQSGAIDGDRIAIGSPATPNGYASINHGTLYFYTRSGATWTLAQTFEPPGVTGTDWGELGTSVSMSSTYAVAGAPSRTLNGIDCGSVCVYKWSGTQWAHVAELPHPLLTSGAKFGTSVTTAGNRII 954
            TFG +V +  +T+VVG   +   A  V  G  YV+V+    W  Q ++ +S       FG  VS+ GD +A    G      NSG  Y+  F R+G  W+  Q +  +     G+    A A+ G ++L+GSP     G   G   V+V +G  +A Q  L PT     +  FG++ A+ GD  A+G+         +N G +Y +TR+GA+W      E       D    G SV +     VAGA +   +G + GS  V+  +   W   A++      +  +FG +++ AG+ ++
Sbjct:  115 TFGRAVAIDGDTIVVGVVYHD--AGFVDTGAAYVFVRAGATWTQQAKLVASDRAANDFFGTAVSISGDTIAVGAEGDRDLGTNSGSAYV--FTRSGGAWTQ-QAKLLAADGAAGHKFGMAIAVEGDTVLVGSPQDDAQGSASGSAYVFVRSGATWAQQAKLLPTGGAQSD-FFGRALALSGDTAAVGALYADRP-GMLNTGAVYAFTRTGASWAQQGKLEAADGDVNDL--FGESVDIEGDTIVAGATNDRDHGPNTGSAYVFTRTAGSWTQKAKMSASDAAADRRFGNAISIAGDAVV 404          
BLAST of jgi.p|Trimin1|157185 vs. uniprot
Match: A0A2G2QSQ2_9PROT (Uncharacterized protein n=1 Tax=Robiginitomaculum sp. TaxID=2030823 RepID=A0A2G2QSQ2_9PROT)

HSP 1 Score: 92.8 bits (229), Expect = 1.690e-17
Identity = 87/297 (29.29%), Postives = 134/297 (45.12%), Query Frame = 1
Query:   70 FGCSVKLHQNTLVVGARNYSPSAAAVAAGRVYVYVKVAGGWQLQQEVGSSGPGGGYLFGDMVSVYGDYMAT---TETGYPLNSGRGYISIFKRTGTVWSLYQGRFTSGGALRGYVGSGACALNGTSLLIGSPVYPTGGVKCGLVAVWVNNGTAYALQQYLSPTTYLTINGRFGQSGAIDGDRIAIGSPATPNGYASINHGTLYFYTRSGATWTLAQTFEPPGVTGTDWGELGTSVSMSSTYAVAGA--PSRTLNGIDCGSVCVYKWSGTQWAHVAELPHPLLTSGAKFGTSVTTAGN 945
            FG SV L  +T V+GA         V AG  YV+ +    W+ Q ++ +        FG  V + GD +      +     NSG  +I I  R+  VW  +Q + T+    +G     + AL+G +L+IG+P     G   G V V+   G ++  Q  L+          FG S A+ GD I +G  A  +   + N G +Y YTRSG +W+  Q  +     G++    G  V++S   A+  A      + G+D GS  V+  SGT W+   +L  P   +  +FG SV   G+
Sbjct:   51 FGYSVALSDDTAVIGAFKDDDQILGVDAGSAYVFTRSGKTWRQQAKLTAIDGATADTFGGNVVLSGDTIVVGVMRDDDMGENSGSAHIYI--RSEGVWH-HQAKITAADGAKGDAFGQSLALDGNTLIIGTPRDDDNGKDTGSVYVFTRIGASWHQQAKLTADDGAA-GDLFGISVALSGDTILVG--ADLHDEIAPNAGAVYVYTRSGNSWS--QQAKLTAADGSETDIFGVRVALSGDTALISARRDDDDIMGVDAGSAYVFVRSGTSWSQQEKLTAPDGVADDRFGRSVALFGD 339          
BLAST of jgi.p|Trimin1|157185 vs. uniprot
Match: A0A2D5EQ07_9DELT (TNFR-Cys domain-containing protein n=2 Tax=Myxococcales TaxID=29 RepID=A0A2D5EQ07_9DELT)

HSP 1 Score: 91.7 bits (226), Expect = 1.010e-16
Identity = 85/293 (29.01%), Postives = 140/293 (47.78%), Query Frame = 1
Query:   70 FGCSVKLHQNTLVVGARNYSPSAAAVAAGRVYVYVKVAGGWQLQQEVGSSGPGGGYLFGDMVSVYGDYM---ATTETGYPLNSGRGYISIFKRTGTVWSLYQGRFTSGGALRGYVGSGACALNGTSLLIGSPVYPTGGVKCGLVAVWVNNGTAYALQQYLSPTTYLTINGRFGQSGAIDGDRIAIGSPATPNGYASINHGTLYFYTRSGATWTLAQTFEPPGVTGTDWG---ELGTSVSMSSTYAVAGAPSRTLNGIDCGSVCVYKWSGTQWAHVAELPHPLLTSGAKFGTSV 930
            FG SV L  +  ++GA          ++G  YV+ +V G W  Q+++ +     G  FG  V++ GD     A  +     NSG  Y+  F R+G  W   Q +  +  +  G +   A A++G +++IG+     GG+  G   V+V +G  +  QQ L+     + + RFG S A+ GD + +G P     +A  + G +Y + R  + W+     E   +TG+D G   +LG SV++S T A+AG+P       + G+  V+  SG  W+   +L     T+ A  G SV
Sbjct:  407 FGTSVALDGDFALIGAPQDDDI--GFSSGAAYVFARVGGAWAEQRKLRAGDEAAGDEFGWSVALSGDTALIGARYDDDAGTNSGSAYV--FVRSGGGWREEQ-KLAASDSTPGDIFGFAVAIDGDTVVIGADGDDDGGMSSGAAYVFVRSGGTWTEQQKLTAGDGGSFD-RFGTSVAVSGDTVLVGMPGDDGLHA--DSGAVYVFARDDSLWS-----ERVKLTGSDGGSAAQLGWSVALSGTSALAGSPRADAATRNSGAAYVFVSSGGVWSEEVKLDAGAATAWA-LGESV 685          
BLAST of jgi.p|Trimin1|157185 vs. uniprot
Match: A0A2E2B0K9_9BACT (Uncharacterized protein n=1 Tax=Phycisphaeraceae bacterium TaxID=2026777 RepID=A0A2E2B0K9_9BACT)

HSP 1 Score: 89.7 bits (221), Expect = 4.880e-16
Identity = 87/299 (29.10%), Postives = 134/299 (44.82%), Query Frame = 1
Query:   73 GCSVKLHQNTLVVGARNYSPSAAAVAAGRVYVYVKVAGGWQ-LQQEVGSSGPGGGYLFGDMVSVYGDYM---ATTETGYPLNSGRGYISIFKRTGTVWSLYQGRFTSGGALRGYVGSGACALNGTSLLIGSPVYPTGGVKCGLVAVWVNNGTAYALQQYLSPTTYLTINGRFGQSGAIDGDRIAIGSPATPN-GYASINHGTLYFYTRSGATWTLAQTFEPPGVTGTDWGELGTSVSMSSTYAVAGAPSRTLNGIDCGSVCVYKWSGTQWAHVAELPHPLLTSGAKFGTSVTTAGNRII 954
            G +V +    +VVGA          AAG VY+Y      WQ + + + S G  G Y FG  V++ GD +   A   TG    +  G + IF   G+ W+     F S G      G  +  ++G  +L+G+      G   G   ++  N      Q  +   +    N R+GQS A+DGDRI IG+ +  + G    + G  Y Y   G+ W   +        G  +G    SVS+S+     GAP  + NG + G+V VY W G  W +  +L + + T+G  FG SV  + +R++
Sbjct: 1894 GYAVAVSSFRMVVGAPYDDDDTNGTAAGTVYIYEWDGQDWQQVDRLIASDGIAGDY-FGYSVAIDGDRIVVGAINATG-DTTTDTGAVYIFDWDGSDWNQTDKLFASNGVASDNFGV-SVDVDGLRVLVGANQT---GALIGSAYLYEWNDVTSQWQVTIITASDRLNNDRYGQSVAMDGDRILIGAWSDDHMGGLGGDAGAAYLYEWDGSAWNETKFAAADSTPGAYYGY---SVSLSADRLAIGAPRDSENGTNAGAVYVYDWDGEHW-NETKLGNSIATAGDLFGYSVGVSMDRLV 2182          
BLAST of jgi.p|Trimin1|157185 vs. uniprot
Match: A0A445N0M2_9DELT (PASTA domain-containing protein n=1 Tax=uncultured Desulfobacterium sp. TaxID=201089 RepID=A0A445N0M2_9DELT)

HSP 1 Score: 89.7 bits (221), Expect = 5.030e-16
Identity = 78/296 (26.35%), Postives = 128/296 (43.24%), Query Frame = 1
Query:   70 FGCSVKLHQNTLVVGARNYSPSAAAVAAGRVYVYVKVAGGWQLQQEVGSSGPGGGYLFGDMVSVYGDYMATTETGYPLN-SGRGYISIFKRTGTVWSLYQGRFTSGGALRGYVGSGACALNGTSLLIGSPVYPTGGVKCGLVAVWVNNGTAYALQQYLSPTTYLTINGRFGQSGAIDGDRIAIGSPATPNGYASINHGTLYFYTRSGATWTLAQTFEPPGVTGTDWGELGTSVSMSSTYAVAGAPSRTLNGIDCGSVCVYKWSGTQWAHVAELPHPLLTSGAKFGTSVTTAGNRII 954
            FG SV +  +  +VGA       +   +G  Y++ +    W  Q ++ +S    G LFG+ VS+ GDY      G     S  G   IF R G+VW L Q + T+  A        + +++G   ++G+ +    G   G   ++   G+ +  Q  L P+     +   G S +I+GD + IG+    +G +  N G+ Y + R G  W              D+   G SVSM+  YA+ GA +    G+  GS  ++K  G  W  + ++      +   FG SV+   N  I
Sbjct: 2688 FGTSVSISGDYAIVGASGDDDGGSL--SGSAYIFKREGPIWVEQAKLTASDAAAGDLFGNSVSINGDYAIIGAYGNDDGGSSSGSAYIFIREGSVW-LEQAKLTASDAAENDYFGYSVSIDGEVAVVGAHLNDDKGANSGSAYIFKREGSTWTEQGKLIPSD-AAADDYLGYSVSINGDYLIIGAYRNDDGGS--NSGSAYIFKRDGLIWAEQAKLTASDAAAGDY--FGLSVSMNGDYAIVGAYADDDKGLSSGSAYLFKRDGLIWTQIKKITAGNGAASDYFGRSVSLTNNYAI 2975          
BLAST of jgi.p|Trimin1|157185 vs. uniprot
Match: A0A445MYM4_9DELT (PASTA domain-containing protein n=1 Tax=uncultured Desulfobacterium sp. TaxID=201089 RepID=A0A445MYM4_9DELT)

HSP 1 Score: 89.0 bits (219), Expect = 9.090e-16
Identity = 80/298 (26.85%), Postives = 130/298 (43.62%), Query Frame = 1
Query:   70 FGCSVKLHQNTLVVGARNYSPSAAAVAAGRVYVYVKVAGGWQLQQEVGSSGPGGGYLFGDMVSVYGDYM---ATTETGYPLNSGRGYISIFKRTGTVWSLYQGRFTSGGALRGYVGSGACALNGTSLLIGSPVYPTGGVKCGLVAVWVNNGTAYALQQYLSPTTYLTINGRFGQSGAIDGDRIAIGSPATPNGYASINHGTLYFYTRSGATWTLAQTFEPPGVTGTDWGELGTSVSMSSTYAVAGAPSRTLNGIDCGSVCVYKWSGTQWAHVAELPHPLLTSGAKFGTSVTTAGNRII 954
            FG SV +  +  +VGA       +   +G  Y++ +    W  Q ++  S    G LFG+ VS+ GDY    A +      +SG  YI  FKR G++W L Q + T+  A        + +++G   ++G+ +    G   G   ++   GT +  Q  L P+     +  FG   +I+GD   IG+    +G +  N G+ Y + R G+ W              D+   G SVS++  YAV GA      G   GS  ++K   + W  + ++      +   FG SV+ A N  I
Sbjct: 2519 FGISVSISGDYAIVGASGDDDGGSL--SGSAYIFKREGLIWAQQAKLTGSDAAAGDLFGNSVSINGDYAIIGAYSNDDGGADSGSAYI--FKREGSIW-LEQAKITASDAAASDYFGYSVSIDGEVAVVGAHLNDDKGANSGSAYIFRREGTIWTEQAKLIPSD-AAADDYFGYPVSINGDCAIIGAYRNDDGGS--NSGSAYIFKRDGSIWAEQAKLTASDAASYDY--FGLSVSINGDYAVVGAYGDDDKGSSSGSAYLFKREVSAWTQIKKITAGNGAASDYFGRSVSLANNYAI 2806          
BLAST of jgi.p|Trimin1|157185 vs. uniprot
Match: A0A2N3FJ04_9ACTN (Uncharacterized protein n=1 Tax=Actinobacteria bacterium HGW-Actinobacteria-6 TaxID=2013651 RepID=A0A2N3FJ04_9ACTN)

HSP 1 Score: 86.3 bits (212), Expect = 4.500e-15
Identity = 62/175 (35.43%), Postives = 93/175 (53.14%), Query Frame = 1
Query:  421 ALNGTSLLIGSPVYPTGGVKCGLVAVWVNNGTAYALQQYLSPTTYLTINGRFGQSGAIDGDRIAIGSPATPNGYASINHGTLYFYTRSGATWTLAQTFEPPGVTGTDWGELGTSVSMSSTYAVAGAPSRTLNGIDCGSVCVYKWSGTQWAHVAELPHPLLTSGAKFGTSVTTAGN 945
            A++G +LL+G+P     G   G V V+V     ++ QQ L+P+T  +   RFG S AI+GD   IG+P    G    + G +Y +TRSG  WTL  T  P  +     G+LGTSV++S T  +AGAP   +     GS  V+  SG+ W++   L  P   +G + G  +  +G+
Sbjct:   60 AIDGDTLLVGAPAV---GDDVGAVYVYVRADGMWSWQQTLAPSTVAS-GDRFGYSVAIEGDTAVIGAPGRA-GAKGDDAGLVYIFTRSGTVWTLQAT--PQTLPEQIGGQLGTSVAISGTTVLAGAPG--IGTDSAGSAWVFTGSGSAWSNTGVLFDPDGAAGDRLGVCLDVSGD 225          
BLAST of jgi.p|Trimin1|157185 vs. uniprot
Match: A0A835ZM52_9STRA (Uncharacterized protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZM52_9STRA)

HSP 1 Score: 84.3 bits (207), Expect = 2.470e-14
Identity = 90/313 (28.75%), Postives = 138/313 (44.09%), Query Frame = 1
Query:   70 FGCSVKLHQNTLVVGARNYSPSAAAVAAGRVYVYVKVAGG-WQLQQEVGSSGPGGGYLFGDMVSVYGDYMATTETGYPLNSGR-----GYISIFKRTGTVWSLYQGRFTSGGALRGYVGSGACALNGTSLLIGSPVYPTGGVKCGLVAVWVN-----NGTAYALQQYLSPTTYLTINGRFGQSGAIDGDRIAIGSPATPNGYASINHGTLYFYTRSGATWTLAQTFEPPGVTGTDWGELGTSVSMSSTYAVAGA-------PSRTLNGIDCGSVCVYKWSGTQWAHVAELPHPLLTSGAKFGTSVTTAGNRII 954
            FG  V +  +T+VVG      S   +A  ++YV+ +  G  W  Q  + +S    G  FG  V++ GDY+      +   +       G   +F R+G+ WS       S   + GY    +CA++G  ++ G+     G    G   ++V       GT ++    L+ TT  TIN +FG + AI GD + +G+      Y+S       +Y  +G TW   Q        G+     G SV++   Y VAGA       PS   N   CG+  V+  SG+ WA  A+L    L + A FG SV  +G+ II
Sbjct:   70 FGGYVAISGDTVVVGT-----SFTGIA--KIYVWYRSTGATWTQQGPLTASDGSSGDSFGSSVAIDGDYIVAGARLWDRKTPSAMTDCGCAYVFVRSGSTWSQQAQLIASDVDVLGY----SCAVDGQYMIAGAYNKTVGVASAGAAYIYVRPDMTATGT-WSFTTKLTATTP-TINEQFGNTVAISGDTVVVGTM-----YSSGIAKVYVWYRSTGTTWV--QQGPLTASDGSSGDRFGYSVAIDGNYIVAGAYVWSRKTPSAITN---CGTAYVFMRSGSTWAQQAQLFASDLMASAYFGLSVAVSGSSII 359          
The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|157185 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A836CES3_9STRA1.720e-233100.00Uncharacterized protein (Fragment) n=1 Tax=Tribone... [more]
A0A7Y2GIH8_9BACT4.910e-2130.80Uncharacterized protein n=1 Tax=Pyrinomonadaceae b... [more]
A0A0K1ED12_CHOCO1.030e-2028.76Uncharacterized protein n=1 Tax=Chondromyces croca... [more]
A0A2G2QSQ2_9PROT1.690e-1729.29Uncharacterized protein n=1 Tax=Robiginitomaculum ... [more]
A0A2D5EQ07_9DELT1.010e-1629.01TNFR-Cys domain-containing protein n=2 Tax=Myxococ... [more]
A0A2E2B0K9_9BACT4.880e-1629.10Uncharacterized protein n=1 Tax=Phycisphaeraceae b... [more]
A0A445N0M2_9DELT5.030e-1626.35PASTA domain-containing protein n=1 Tax=uncultured... [more]
A0A445MYM4_9DELT9.090e-1626.85PASTA domain-containing protein n=1 Tax=uncultured... [more]
A0A2N3FJ04_9ACTN4.500e-1535.43Uncharacterized protein n=1 Tax=Actinobacteria bac... [more]
A0A835ZM52_9STRA2.470e-1428.75Uncharacterized protein (Fragment) n=1 Tax=Tribone... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Contig_3contigContig_3:942766..943719 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Tribonema minus UTEX_B_31562021-06-17
Properties
Property NameValue
ProteomeIdTrimin1|157185|e_gw1.3.418.1
DescriptionFG-GAP repeat
COG categoryS
Max annot lvl28221|Deltaproteobacteria
EggNOG OGsCOG3266@1|root,COG3266@2|Bacteria,1QZBM@1224|Proteobacteria,42TG7@68525|delta/epsilon subdivisions,2WQPM@28221|Deltaproteobacteria,2Z3I2@29|Myxococcales
Evalue2.92e-18
Seed ortholog378806.STAUR_7915
Hectar predicted targeting categoryother localisation
TranscriptId157507
TrackFilteredModels1
ProteinId157185
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|157185gene_328Tribonema minus UTEX_B_3156 geneContig_3 942766..943719 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
exon_328_1exon_328_1Tribonema minus UTEX_B_3156 exonContig_3 942766..943719 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
CDS_328CDS_328Tribonema minus UTEX_B_3156 CDSContig_3 942766..943719 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|157185Trimin1|157185|e_gw1.3.418.1Tribonema minus UTEX_B_3156 polypeptideContig_3 942766..943719 -


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>mRNA_328 ID=mRNA_328|Name=jgi.p|Trimin1|157185|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=954bp|location=Sequence derived from alignment at Contig_3:942766..943719- (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon.  
ATGAGCGCCGCGACGTCGAACCAGCTCATCGTCCCCACGGGGCTCGTCTA
TACCGCTTGGCTAACCACCTTTGGGTGCTCGGTCAAACTCCACCAGAACA
CGCTGGTGGTGGGTGCCCGCAACTACTCTCCCAGCGCCGCCGCCGTGGCC
GCCGGCAGGGTCTACGTGTACGTGAAGGTGGCCGGCGGATGGCAGCTGCA
GCAGGAGGTGGGATCCTCGGGGCCAGGGGGAGGCTACCTCTTTGGCGACA
TGGTCAGCGTGTACGGCGACTACATGGCGACCACTGAGACAGGCTATCCT
CTCAACTCAGGACGCGGCTACATTTCGATCTTCAAAAGGACAGGCACCGT
GTGGTCGCTGTATCAGGGCCGATTCACCTCGGGTGGCGCGCTCCGTGGGT
ACGTCGGGTCCGGCGCGTGTGCTCTGAACGGGACGTCGCTCCTCATTGGT
TCGCCAGTGTATCCTACCGGCGGAGTCAAATGCGGGCTCGTCGCAGTATG
GGTCAACAACGGCACTGCCTACGCTCTGCAGCAGTACCTCTCGCCAACCA
CGTACTTGACCATCAACGGAAGGTTCGGTCAGTCCGGAGCCATCGATGGA
GATCGGATCGCGATCGGATCACCGGCCACGCCCAATGGATACGCGTCGAT
CAACCACGGCACACTGTACTTCTACACTCGGAGCGGCGCGACATGGACGC
TGGCGCAGACGTTCGAGCCTCCGGGCGTTACCGGTACAGATTGGGGCGAG
CTCGGCACGAGCGTGTCCATGAGCTCCACGTACGCGGTCGCAGGCGCCCC
CAGCAGGACGCTGAACGGCATCGACTGCGGCTCCGTATGCGTGTACAAGT
GGAGCGGCACGCAGTGGGCTCATGTGGCGGAGCTGCCTCACCCCCTGCTC
ACGTCTGGCGCAAAGTTCGGTACTTCTGTGACTACCGCCGGAAACCGCAT
CATC
back to top

protein sequence of jgi.p|Trimin1|157185

>Trimin1|157185|e_gw1.3.418.1 ID=Trimin1|157185|e_gw1.3.418.1|Name=jgi.p|Trimin1|157185|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=318bp
MSAATSNQLIVPTGLVYTAWLTTFGCSVKLHQNTLVVGARNYSPSAAAVA
AGRVYVYVKVAGGWQLQQEVGSSGPGGGYLFGDMVSVYGDYMATTETGYP
LNSGRGYISIFKRTGTVWSLYQGRFTSGGALRGYVGSGACALNGTSLLIG
SPVYPTGGVKCGLVAVWVNNGTAYALQQYLSPTTYLTINGRFGQSGAIDG
DRIAIGSPATPNGYASINHGTLYFYTRSGATWTLAQTFEPPGVTGTDWGE
LGTSVSMSSTYAVAGAPSRTLNGIDCGSVCVYKWSGTQWAHVAELPHPLL
TSGAKFGTSVTTAGNRII
back to top

mRNA from alignment at Contig_3:942766..943719-

Legend: exonpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_328 ID=mRNA_328|Name=jgi.p|Trimin1|157185|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=954bp|location=Sequence derived from alignment at Contig_3:942766..943719- (Tribonema minus UTEX_B_3156 )
ATGAGCGCCGCGACGTCGAACCAGCTCATCGTCCCCACGGGGCTCGTCTA TACCGCTTGGCTAACCACCTTTGGGTGCTCGGTCAAACTCCACCAGAACA CGCTGGTGGTGGGTGCCCGCAACTACTCTCCCAGCGCCGCCGCCGTGGCC GCCGGCAGGGTCTACGTGTACGTGAAGGTGGCCGGCGGATGGCAGCTGCA GCAGGAGGTGGGATCCTCGGGGCCAGGGGGAGGCTACCTCTTTGGCGACA TGGTCAGCGTGTACGGCGACTACATGGCGACCACTGAGACAGGCTATCCT CTCAACTCAGGACGCGGCTACATTTCGATCTTCAAAAGGACAGGCACCGT GTGGTCGCTGTATCAGGGCCGATTCACCTCGGGTGGCGCGCTCCGTGGGT ACGTCGGGTCCGGCGCGTGTGCTCTGAACGGGACGTCGCTCCTCATTGGT TCGCCAGTGTATCCTACCGGCGGAGTCAAATGCGGGCTCGTCGCAGTATG GGTCAACAACGGCACTGCCTACGCTCTGCAGCAGTACCTCTCGCCAACCA CGTACTTGACCATCAACGGAAGGTTCGGTCAGTCCGGAGCCATCGATGGA GATCGGATCGCGATCGGATCACCGGCCACGCCCAATGGATACGCGTCGAT CAACCACGGCACACTGTACTTCTACACTCGGAGCGGCGCGACATGGACGC TGGCGCAGACGTTCGAGCCTCCGGGCGTTACCGGTACAGATTGGGGCGAG CTCGGCACGAGCGTGTCCATGAGCTCCACGTACGCGGTCGCAGGCGCCCC CAGCAGGACGCTGAACGGCATCGACTGCGGCTCCGTATGCGTGTACAAGT GGAGCGGCACGCAGTGGGCTCATGTGGCGGAGCTGCCTCACCCCCTGCTC ACGTCTGGCGCAAAGTTCGGTACTTCTGTGACTACCGCCGGAAACCGCAT CATC
back to top

Coding sequence (CDS) from alignment at Contig_3:942766..943719-

>mRNA_328 ID=mRNA_328|Name=jgi.p|Trimin1|157185|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=954bp|location=Sequence derived from alignment at Contig_3:942766..943719- (Tribonema minus UTEX_B_3156 )
ATGAGCGCCGCGACGTCGAACCAGCTCATCGTCCCCACGGGGCTCGTCTA
TACCGCTTGGCTAACCACCTTTGGGTGCTCGGTCAAACTCCACCAGAACA
CGCTGGTGGTGGGTGCCCGCAACTACTCTCCCAGCGCCGCCGCCGTGGCC
GCCGGCAGGGTCTACGTGTACGTGAAGGTGGCCGGCGGATGGCAGCTGCA
GCAGGAGGTGGGATCCTCGGGGCCAGGGGGAGGCTACCTCTTTGGCGACA
TGGTCAGCGTGTACGGCGACTACATGGCGACCACTGAGACAGGCTATCCT
CTCAACTCAGGACGCGGCTACATTTCGATCTTCAAAAGGACAGGCACCGT
GTGGTCGCTGTATCAGGGCCGATTCACCTCGGGTGGCGCGCTCCGTGGGT
ACGTCGGGTCCGGCGCGTGTGCTCTGAACGGGACGTCGCTCCTCATTGGT
TCGCCAGTGTATCCTACCGGCGGAGTCAAATGCGGGCTCGTCGCAGTATG
GGTCAACAACGGCACTGCCTACGCTCTGCAGCAGTACCTCTCGCCAACCA
CGTACTTGACCATCAACGGAAGGTTCGGTCAGTCCGGAGCCATCGATGGA
GATCGGATCGCGATCGGATCACCGGCCACGCCCAATGGATACGCGTCGAT
CAACCACGGCACACTGTACTTCTACACTCGGAGCGGCGCGACATGGACGC
TGGCGCAGACGTTCGAGCCTCCGGGCGTTACCGGTACAGATTGGGGCGAG
CTCGGCACGAGCGTGTCCATGAGCTCCACGTACGCGGTCGCAGGCGCCCC
CAGCAGGACGCTGAACGGCATCGACTGCGGCTCCGTATGCGTGTACAAGT
GGAGCGGCACGCAGTGGGCTCATGTGGCGGAGCTGCCTCACCCCCTGCTC
ACGTCTGGCGCAAAGTTCGGTACTTCTGTGACTACCGCCGGAAACCGCAT
CATC
back to top