mRNA_3208 (mRNA) Tribonema minus UTEX_B_3156

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
Namejgi.p|Trimin1|347650
Unique NamemRNA_3208
TypemRNA
OrganismTribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Homology
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BLAST of jgi.p|Trimin1|347650 vs. uniprot
Match: A0A835ZIR2_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZIR2_9STRA)

HSP 1 Score: 476 bits (1225), Expect = 5.990e-169
Identity = 244/244 (100.00%), Postives = 244/244 (100.00%), Query Frame = 2 
Query:   20 MRATLALPLLGLIAEGVGAFVLQLSRSRACYTTGTSSARLRMTEDTGAEDVPVDDSFDDDRDPNEVVPIIYKRLDETYDTQDYEGAFTLTEDTSKYDTNPENAAGERMLRVLMLGGSSSEAKILASLSEMEDTICGTYTSWDDSMGELHGSIPTIPFNNLYPCEDPADAAQQASLAQFICADVVVAGGSYSVPAKADFVAQLAKELEGTGILFVPPSGAGAMLAGDFSMLKGAVPSTKGEAVPA 751
            MRATLALPLLGLIAEGVGAFVLQLSRSRACYTTGTSSARLRMTEDTGAEDVPVDDSFDDDRDPNEVVPIIYKRLDETYDTQDYEGAFTLTEDTSKYDTNPENAAGERMLRVLMLGGSSSEAKILASLSEMEDTICGTYTSWDDSMGELHGSIPTIPFNNLYPCEDPADAAQQASLAQFICADVVVAGGSYSVPAKADFVAQLAKELEGTGILFVPPSGAGAMLAGDFSMLKGAVPSTKGEAVPA
Sbjct:    1 MRATLALPLLGLIAEGVGAFVLQLSRSRACYTTGTSSARLRMTEDTGAEDVPVDDSFDDDRDPNEVVPIIYKRLDETYDTQDYEGAFTLTEDTSKYDTNPENAAGERMLRVLMLGGSSSEAKILASLSEMEDTICGTYTSWDDSMGELHGSIPTIPFNNLYPCEDPADAAQQASLAQFICADVVVAGGSYSVPAKADFVAQLAKELEGTGILFVPPSGAGAMLAGDFSMLKGAVPSTKGEAVPA 244
The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|347650 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A835ZIR2_9STRA5.990e-169100.00Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Contig_14contigContig_14:790216..793642 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Tribonema minus UTEX_B_31562021-06-17
Properties
Property NameValue
ProteomeIdTrimin1|347650|estExt_Genemark1.C_Ctg_140084
Hectar predicted targeting categorysignal peptide
Ec32 ortholog descriptionexpressed unknown protein
Ec32 orthologEc-06_003750.1
TranscriptId347972
TrackFilteredModels1
ProteinId347650
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|347650gene_3208Tribonema minus UTEX_B_3156 geneContig_14 790216..793642 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|347650Trimin1|347650|estExt_Genemark1.C_Ctg_140084Tribonema minus UTEX_B_3156 polypeptideContig_14 790320..793623 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
exon_3208_6exon_3208_6Tribonema minus UTEX_B_3156 exonContig_14 790216..790361 -
exon_3208_5exon_3208_5Tribonema minus UTEX_B_3156 exonContig_14 790859..791035 -
exon_3208_4exon_3208_4Tribonema minus UTEX_B_3156 exonContig_14 791350..791475 -
exon_3208_3exon_3208_3Tribonema minus UTEX_B_3156 exonContig_14 792461..792577 -
exon_3208_2exon_3208_2Tribonema minus UTEX_B_3156 exonContig_14 793022..793111 -
exon_3208_1exon_3208_1Tribonema minus UTEX_B_3156 exonContig_14 793441..793642 -


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
UTR3_3208UTR3_3208Tribonema minus UTEX_B_3156 three_prime_UTRContig_14 790216..790319 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
CDS_3208CDS_3208Tribonema minus UTEX_B_3156 CDSContig_14 793441..793623 -


The following five_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
UTR5_3208UTR5_3208Tribonema minus UTEX_B_3156 five_prime_UTRContig_14 793624..793642 -


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>mRNA_3208 ID=mRNA_3208|Name=jgi.p|Trimin1|347650|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=858bp|location=Sequence derived from alignment at Contig_14:790216..793642- (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon.  
CCGGTACCCTCCCACCATCATGCGGGCGACTCTTGCGCTGCCACTTCTGG
GCCTCATCGCAGAAGGTGTGGGCGCATTCGTGTTGCAGCTCTCTCGGTCA
CGAGCATGCTATACGACTGGGACATCATCAGCACGCTTACGCATGACAGA
GGACACAGGAGCAGAGGATGTCCCAGTCGACGACTCTTTCGATGATGACC
GGGATCCCAACGAGGTGGTCCCCATCATCTACAAGCGGTTGGACGAAACA
TACGACACGCAAGACTACGAGGGTGCCTTCACGCTTACAGAGGACACTAG
CAAATATGATACCAACCCTGAGAATGCGGCTGGAGAACGGATGCTGCGCG
TGCTCATGCTTGGCGGGAGCAGCAGTGAGGCCAAAATATTGGCCAGCTTG
AGCGAAATGGAGGACACGATATGTGGCACATACACATCGTGGGATGACAG
CATGGGAGAGCTGCACGGGAGCATACCCACCATTCCTTTCAACAACTTGT
ACCCCTGTGAGGACCCCGCTGATGCGGCACAGCAGGCAAGCCTGGCACAG
TTCATATGTGCAGACGTGGTGGTGGCGGGCGGGTCATACTCTGTGCCGGC
TAAGGCAGACTTTGTGGCACAGCTGGCAAAGGAGCTGGAGGGCACGGGAA
TACTCTTTGTGCCTCCTTCTGGAGCGGGTGCCATGCTGGCGGGCGACTTT
TCTATGCTCAAGGGTGCCGTGCCCAGCACCAAGGGAGAGGCAGTGCCAGC
ATGACCAAAGAAGTGACAGTTTGCCGTGACAAGTAAAGCAATTTTTGTGC
AACACATTTGCATTAATGGGAATACCCAGCTCCTGTTCAAGTCAGGACAT
GCACAACT
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protein sequence of jgi.p|Trimin1|347650

>Trimin1|347650|estExt_Genemark1.C_Ctg_140084 ID=Trimin1|347650|estExt_Genemark1.C_Ctg_140084|Name=jgi.p|Trimin1|347650|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=245bp
MRATLALPLLGLIAEGVGAFVLQLSRSRACYTTGTSSARLRMTEDTGAED
VPVDDSFDDDRDPNEVVPIIYKRLDETYDTQDYEGAFTLTEDTSKYDTNP
ENAAGERMLRVLMLGGSSSEAKILASLSEMEDTICGTYTSWDDSMGELHG
SIPTIPFNNLYPCEDPADAAQQASLAQFICADVVVAGGSYSVPAKADFVA
QLAKELEGTGILFVPPSGAGAMLAGDFSMLKGAVPSTKGEAVPA*
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mRNA from alignment at Contig_14:790216..793642-

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_3208 ID=mRNA_3208|Name=jgi.p|Trimin1|347650|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=3427bp|location=Sequence derived from alignment at Contig_14:790216..793642- (Tribonema minus UTEX_B_3156 )
CCGGTACCCTCCCACCATCATGCGGGCGACTCTTGCGCTGCCACTTCTGG
GCCTCATCGCAGAAGGTGTGGGCGCATTCGTGTTGCAGCTCTCTCGGTCA
CGAGCATGCTATACGACTGGGACATCATCAGCACGCTTACGCATGACAGA
GGACACAGGAGCAGAGGATGTCCCAGTCGACGACTCTTTCGATGATGACC
GGGTGCGTGCTGCTGGTTTTATCTTAGCATCACATTGTGGCGCAGTATCA
AGCTGCAAAGGCCTGCAGGTCGCACACAGAGATGATTGCAGTTACCCGCG
GTGCAAGTGCAAAATGATCCCTTGTGCTGTTGTGCATCACCATCGTGAAT
GCAGCTCTTCGGGTTTGACGCTTACAGCCTTTTGTGTGGTGCAAGTACTA
TGGCATGATGAGTGCTGGTTAGGTACAAAAACGCTGGGGTATAGCGCAGG
TAACCGAGAACAAATGCTTACACCTTGCACTCACACGCTCTTACCAAGTG
CCCTTGTCTGACATGACCATTACATCTGCAGGATCCCAACGAGGTGGTCC
CCATCATCTACAAGCGGTTGGACGAAACATACGACACGCAAGACTACGAG
GGTGCCTTCACGCTTACAGAGGTACGCAACGTCTCAATCACCAGCATGAC
TGCAGCAGCACCAGATCCATTGTGTGCCTCTTAGAATTAGATATGTCGTT
GCTCCAATCATGCCTTGTTGGTGACTCAACCGGCTGCTGACAGCTCAGCC
GCAGATACATGGCATCAGCAAGCCTGCTGAGCCTGTCATCAGGAGCTGGG
TAATTGCAAATCTGCTGTTGAGCTTTTTGTGCACTGTATCATAAAATTCG
AGCCCACTTTGTGTGGATGTTTCGCAGTATGTGGTTCTGATTTCATGCCA
TGCAGCAGCAACCATGCTGAATGCACTTTATACCGATCTTCTTCGTGATG
CAACCTAAGCTCTGAAGTTAGGCTTCGGAAAGTGGTGTGTCACCCAGCTA
CCCCTCTCGTGAGATGACACACCCTCAGTCTTTCTCCCACATGTGTTGTG
TGCTCTATCGCACAGGACACTAGCAAATATGATACCAACCCTGAGAATGC
GGCTGGAGAACGGATGCTGCGCGTGCTCATGCTTGGCGGGAGCAGCAGTG
AGGCCAAAATATTGGCCAGCTTGAGCGAAATGGTGAGAGAGCATTTGCTG
TGCTTGCTCTGCACTAGCTCTGCTCGCTGATCCATGTCGATTACTCTGCC
GTGAGGACTTGGCTGCCTCTGCGATCCCGCACATGTACCGTCTTGTCTAT
AACTTAAAAGGACACTGGACGGCTTTTTTGTTGGTTTCAACGCCAGAACC
AAAACATAGGACACCCTTTTGATTGCTTCATCAAAAAGATGTCCACCCCG
TATCTAATTGCTTCAACAATAAGATGTTCACCCCTCTTCATGTGCCACAC
AGTCCGATTACTATGCACACGCCGTGCTCAGAGCAAAGCTGAACTTGCTC
GTGGTGCTGGAGCTGGGTCAGGCGGCGCTGTGCATGTTGCTGCGTGACTG
GCTTAAAGCCTAACAGGCGCTGTTTACCAGCTTTGACCGCTGCTCTATGG
GTATCTAACAGCAATTTGGCACATCAAGGGCTGCTGCGGCACACGGACCC
TTACAAAACTGGTGAGGGACGAAACGTTTTTGCGGCCCTCCTCGGCTTCG
GCCAGTGAATCATCCCTGAAGAAGAACGCAGTGCATAGAAGTTGATCTCT
CAGTGCTCTTCTAAAATGGCGTCCACCCCCTTAAAATTAGCTTCGCCAAA
AGGACGTCAACCCCCCCACTTTACGCAGAAACAAAAAGCCGTCCAGTGTC
CTTGATTATAGACAAGACGGTATGGTGAATAGGAGGTACTGTGCTGCACC
CCACTTTTGCAAAAGCTATTGTGTTGGCAGTGCAACTGAACGCCACACAC
TGTAGACCGGATCCGATTGGGAGGTCTGTGTGCTGCAGTGGTGCATGCCA
GTCACTTTCTACTTCAAAACTCAGGCCTGTTGTACTACGCTACAGCTTTG
ATGTGCTGAATAATGATGATGAGACATTGCGCAGAAGCTCAAATCGCACT
ATCAACACAAACTGCTGTTGATGCGAGGTACTGCTGCATGTCCTGCTTGG
GTTTCCGTGTGCACCAGGAGGACACGATATGTGGCACATACACATCGTGG
GATGACAGCATGGGAGAGCTGCACGGGAGCATACCCACCATTCCTTTCAA
CAACTTGTACCCCTGTGAGGACCCCGCTGATGCGGCACAGCAGGTGAGAG
GCGCTGGCTGCCCATGACATTTCATGCTGTGAGCATGCGGCATTAGATGC
TGTGATTAGGTGATGTGTGTTTCGCCTCATTGCCTGCTGGGTAGCCTTAG
CTGATATAGCGTCCAGCACAAGCTCTCGCCATGCTGGCCCTCCGTGTTGT
TCATTGATTTCTGGCGCACTTCATTGTGCAACTAATGCAAATGGCGGTCG
TTCAAAGTCAGTTGCTTTGGCCTTGACTGCATGCTCTGCAACAAATGCCC
GTTCTGTGCCTAATCCTAGACCACTTTTTGTTTTTGCAAACACGTGTCTA
ATACCAGGCAAGCCTGGCACAGTTCATATGTGCAGACGTGGTGGTGGCGG
GCGGGTCATACTCTGTGCCGGCTAAGGCAGACTTTGTGGCACAGCTGGCA
AAGGAGCTGGAGGGCACGGGAATACTCTTTGTGCCTCCTTCTGGAGCGGG
TGCCATGCTGGCGGGCGACTTTTCTATGCTCAAGGTGCGTTCTGCAGCAT
CTCTTTGGAATGCTTCACAATGGTATTCTGTGTGGGATGGGCTTCATAGC
AACATGCACAGGCCTAGTTCGGCTGCAAACGCTCACCATTTCCTTTACTT
GGCATTTGAACTTTGCTTTGTGCCTGGCGATATGATTTGTTGGGCGGTGC
CTTGGTATAGTTTAGATGAGTAGCGAACTACCTACTGGTGCAATATGAGC
AGGACTTTAACCCATGCTTTCACAAAGTAGTCAGGTATGTCCACTAGCAG
CTACACACTTGACGCTTCAGTGGCTGCCTGAGACCGCCGAGTCCGTTGAG
GTGTATTCTGATTATGATTATCGTCAGTGATTATGGTCATCAGGCTTTGA
TTGCTGGTGGTCCTTGTTTACCATGGTCATGCCAACTGCTTGTTGTCTGG
CCTCAAGGTATCTTGATATACGCAGCACTGACTTGATCACCTGCGCTGGT
GCTTGTCCACTTTGAACTGTTGCTGTTGCAGGGTGCCGTGCCCAGCACCA
AGGGAGAGGCAGTGCCAGCATGACCAAAGAAGTGACAGTTTGCCGTGACA
AGTAAAGCAATTTTTGTGCAACACATTTGCATTAATGGGAATACCCAGCT
CCTGTTCAAGTCAGGACATGCACAACT
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Coding sequence (CDS) from alignment at Contig_14:790216..793642-

>mRNA_3208 ID=mRNA_3208|Name=jgi.p|Trimin1|347650|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=735bp|location=Sequence derived from alignment at Contig_14:790216..793642- (Tribonema minus UTEX_B_3156 )
ATGCGGGCGACTCTTGCGCTGCCACTTCTGGGCCTCATCGCAGAAGGTGT
GGGCGCATTCGTGTTGCAGCTCTCTCGGTCACGAGCATGCTATACGACTG
GGACATCATCAGCACGCTTACGCATGACAGAGGACACAGGAGCAGAGGAT
GTCCCAGTCGACGACTCTTTCGATGATGACCGGGATCCCAACGAGGTGGT
CCCCATCATCTACAAGCGGTTGGACGAAACATACGACACGCAAGACTACG
AGGGTGCCTTCACGCTTACAGAGGACACTAGCAAATATGATACCAACCCT
GAGAATGCGGCTGGAGAACGGATGCTGCGCGTGCTCATGCTTGGCGGGAG
CAGCAGTGAGGCCAAAATATTGGCCAGCTTGAGCGAAATGGAGGACACGA
TATGTGGCACATACACATCGTGGGATGACAGCATGGGAGAGCTGCACGGG
AGCATACCCACCATTCCTTTCAACAACTTGTACCCCTGTGAGGACCCCGC
TGATGCGGCACAGCAGGCAAGCCTGGCACAGTTCATATGTGCAGACGTGG
TGGTGGCGGGCGGGTCATACTCTGTGCCGGCTAAGGCAGACTTTGTGGCA
CAGCTGGCAAAGGAGCTGGAGGGCACGGGAATACTCTTTGTGCCTCCTTC
TGGAGCGGGTGCCATGCTGGCGGGCGACTTTTCTATGCTCAAGGGTGCCG
TGCCCAGCACCAAGGGAGAGGCAGTGCCAGCATGA
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