mRNA_3195 (mRNA) Tribonema minus UTEX_B_3156

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
Namejgi.p|Trimin1|152148
Unique NamemRNA_3195
TypemRNA
OrganismTribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Homology
BLAST of jgi.p|Trimin1|152148 vs. uniprot
Match: A0A835ZE47_9STRA (Uncharacterized protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZE47_9STRA)

HSP 1 Score: 243 bits (620), Expect = 1.830e-81
Identity = 121/121 (100.00%), Postives = 121/121 (100.00%), Query Frame = 1
Query:    1 VILDTRESLDSPLIGPTVQQVASDMPSVKGGDDLFVAPLAIPRLPRRQYFLFAPAIYTDDINKNDRERCDTLYIDVKQAIFQGIELLLRARESDFYGDPVRRLAYEALSGGKPAPTFPLYV 363
            VILDTRESLDSPLIGPTVQQVASDMPSVKGGDDLFVAPLAIPRLPRRQYFLFAPAIYTDDINKNDRERCDTLYIDVKQAIFQGIELLLRARESDFYGDPVRRLAYEALSGGKPAPTFPLYV
Sbjct:    1 VILDTRESLDSPLIGPTVQQVASDMPSVKGGDDLFVAPLAIPRLPRRQYFLFAPAIYTDDINKNDRERCDTLYIDVKQAIFQGIELLLRARESDFYGDPVRRLAYEALSGGKPAPTFPLYV 121          
BLAST of jgi.p|Trimin1|152148 vs. uniprot
Match: A0A835Z8H3_9STRA (Alpha/beta-hydrolase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z8H3_9STRA)

HSP 1 Score: 239 bits (610), Expect = 2.110e-73
Identity = 119/121 (98.35%), Postives = 120/121 (99.17%), Query Frame = 1
Query:    1 VILDTRESLDSPLIGPTVQQVASDMPSVKGGDDLFVAPLAIPRLPRRQYFLFAPAIYTDDINKNDRERCDTLYIDVKQAIFQGIELLLRARESDFYGDPVRRLAYEALSGGKPAPTFPLYV 363
            VILDTRESLDSPLIGPTVQQVASDMPSV+GGDDLFVAPLAIPRLPRRQYFLFAPAIYTDDINKNDRERCDTLYIDVKQAIFQGIELLLRARESDFY DPVRRLAYEALSGGKPAPTFPLYV
Sbjct:  535 VILDTRESLDSPLIGPTVQQVASDMPSVRGGDDLFVAPLAIPRLPRRQYFLFAPAIYTDDINKNDRERCDTLYIDVKQAIFQGIELLLRARESDFYDDPVRRLAYEALSGGKPAPTFPLYV 655          
BLAST of jgi.p|Trimin1|152148 vs. uniprot
Match: A0A8J9R9F4_9CHLO (Acyltransferase-like protein At1g54570, chloroplastic n=1 Tax=Coccomyxa sp. Obi TaxID=2315456 RepID=A0A8J9R9F4_9CHLO)

HSP 1 Score: 89.7 bits (221), Expect = 1.910e-18
Identity = 52/127 (40.94%), Postives = 73/127 (57.48%), Query Frame = 1
Query:    1 VILDTRESLDSPLIGPTVQQVA-SDMPSVKGG-------DDLFVAPLAIPRLPRRQYFLFAPAIYTDDINKNDRERCDTLYIDVKQAIFQGIELLLRARESDFYGDPVRRLAYEALSGGKPAPTFPL 357
            ++LD  E  + P+IG  ++Q A +++P  + G       +DLF+AP A+P+ P+R Y+ F   I T   + +D  R   LY  VK  +  GI  LLR RE D Y   + R+ YEA SGGK APTFPL
Sbjct:  645 MLLDPAEIRNLPIIGGLIEQRARNNIPQARRGVSEDKALEDLFIAPFAVPKAPQRFYYFFGKPIETSRADLDDPARVSQLYRQVKGEVESGISFLLRNRERDPYNHFLPRVLYEAASGGKQAPTFPL 771          
BLAST of jgi.p|Trimin1|152148 vs. uniprot
Match: I0Z307_COCSC (Alpha/beta-hydrolase n=1 Tax=Coccomyxa subellipsoidea (strain C-169) TaxID=574566 RepID=I0Z307_COCSC)

HSP 1 Score: 85.9 bits (211), Expect = 4.180e-17
Identity = 51/127 (40.16%), Postives = 71/127 (55.91%), Query Frame = 1
Query:    1 VILDTRESLDSPLIGPTVQQVA-SDMPSVKGG-------DDLFVAPLAIPRLPRRQYFLFAPAIYTDDINKNDRERCDTLYIDVKQAIFQGIELLLRARESDFYGDPVRRLAYEALSGGKPAPTFPL 357
            ++L+  E  + P IG  ++Q A + +P  + G       +DLF+AP A+P+ P+R Y+LF   I T   + +D  R   LY  VK  +  GI  LLR R+ D Y   + R  YEA SGGK APTFPL
Sbjct:  522 MLLEPAEIRNLPFIGGMIEQRARNSIPQARRGVSEDKELEDLFIAPFAVPKAPQRFYYLFGKPIETSRADLDDPARVGHLYRQVKGEVESGISFLLRNRQRDPYNHFLPRALYEAASGGKQAPTFPL 648          
BLAST of jgi.p|Trimin1|152148 vs. uniprot
Match: A0A0M0K5E1_9EUKA (Hydrolase_4 domain-containing protein n=1 Tax=Chrysochromulina tobinii TaxID=1460289 RepID=A0A0M0K5E1_9EUKA)

HSP 1 Score: 72.0 bits (175), Expect = 3.030e-12
Identity = 44/120 (36.67%), Postives = 67/120 (55.83%), Query Frame = 1
Query:    1 VILDTRESLDSPLIGPTVQQVASDMPSVKGGDDLFVAPLAIPRLPRRQYFLFAPAIYTDDINKNDRERCDTLYIDVKQAIFQGIELLLRARESDFYGDPVRRLAYEAL-SGGKPAPTFPL 357
            ++LD  E L  P++G  V Q A+  P  + G+  FVAP+++PR+P R YFLF   I T  ++  D+  C  LY  V+  +   ++ LL  R+ D +   + R+A EA     K AP+FPL
Sbjct:  587 MLLDADELLSLPVLGQRVAQSAARTPVGRPGER-FVAPVSVPRVPGRYYFLFGAPIETRGVDPTDKAACAALYASVRAELEGCVDYLLEKRKHDPWEAALPRVAVEASWDFAKQAPSFPL 705          
BLAST of jgi.p|Trimin1|152148 vs. uniprot
Match: A0A7S0XKY5_9CHLO (Hypothetical protein n=1 Tax=Ostreococcus mediterraneus TaxID=1486918 RepID=A0A7S0XKY5_9CHLO)

HSP 1 Score: 71.6 bits (174), Expect = 4.100e-12
Identity = 42/122 (34.43%), Postives = 65/122 (53.28%), Query Frame = 1
Query:    4 ILDTRESLDSPLIGPTVQQVASDMPSVKGGDD------LFVAPLAIPRLPRRQYFLFAPAIYTDDINKNDRERCDTLYIDVKQAIFQGIELLLRARESDFYGDPVRRLAYEALSGGKPAPTF 351
            I+   + L + + G +V++ A+ MP  +  DD      LF+ P+A+P++P R YF F   I   D++ +D E    +Y +VK  +  GIE L   R SD + D   RL YE  +  + APTF
Sbjct:  539 IVQDADDLLNGVFGESVRERANKMPKARVNDDFRDDEELFIQPVAVPKIPERFYFRFMAPIDLSDVDLDDEESVKAVYANVKNEVASGIEYLRAKRASDPFKDLAPRLLYERATSAQ-APTF 659          
BLAST of jgi.p|Trimin1|152148 vs. uniprot
Match: A0A835SUV5_9CHLO (Uncharacterized protein n=1 Tax=Chlamydomonas schloesseri TaxID=2026947 RepID=A0A835SUV5_9CHLO)

HSP 1 Score: 70.9 bits (172), Expect = 7.800e-12
Identity = 44/127 (34.65%), Postives = 66/127 (51.97%), Query Frame = 1
Query:    1 VILDTRESLDSPLIGPTVQQVASDMPSVKGG-------DDLFVAPLAIPRLPRRQYFLFAPAIYTDDINKNDRERCDTLYIDVKQAIFQGIELLLRARESDFYGDPVRRLAYEALSGGKP---APTF 351
            ++LD+ +  +SPL     ++ A+  P  + G       D+ F+ PL  P +P R YFLF   + T      DR  CD +Y +VK  + +GI+ LLR R++D Y D + R+ YE      P   APTF
Sbjct:  700 LVLDSDDIRNSPLWSERAREQAAAAPRARVGVAAEAGLDETFIPPLIAPAVPSRWYFLFGRPVATTPDMYRDRAACDQVYAEVKGQVEEGIDYLLRKRQTDPYRDFLGRMLYEQNPPFGPRRVAPTF 826          
The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|152148 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 7
Match NameE-valueIdentityDescription
A0A835ZE47_9STRA1.830e-81100.00Uncharacterized protein (Fragment) n=1 Tax=Tribone... [more]
A0A835Z8H3_9STRA2.110e-7398.35Alpha/beta-hydrolase n=1 Tax=Tribonema minus TaxID... [more]
A0A8J9R9F4_9CHLO1.910e-1840.94Acyltransferase-like protein At1g54570, chloroplas... [more]
I0Z307_COCSC4.180e-1740.16Alpha/beta-hydrolase n=1 Tax=Coccomyxa subellipsoi... [more]
A0A0M0K5E1_9EUKA3.030e-1236.67Hydrolase_4 domain-containing protein n=1 Tax=Chry... [more]
A0A7S0XKY5_9CHLO4.100e-1234.43Hypothetical protein n=1 Tax=Ostreococcus mediterr... [more]
A0A835SUV5_9CHLO7.800e-1234.65Uncharacterized protein n=1 Tax=Chlamydomonas schl... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Contig_14contigContig_14:694116..694478 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Tribonema minus UTEX_B_31562021-06-17
Properties
Property NameValue
ProteomeIdTrimin1|152148|gw1.14.229.1
DescriptionDiacylglycerol acyltransferase
COG categoryI
Max annot lvl3041|Chlorophyta
EggNOG OGsCOG0204@1|root,2QQUD@2759|Eukaryota,37RY3@33090|Viridiplantae,34H3H@3041|Chlorophyta
Evalue5.85e-19
Seed ortholog554065.XP_005850404.1
Hectar predicted targeting categoryother localisation
TranscriptId152470
TrackFilteredModels1
ProteinId152148
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|152148gene_3195Tribonema minus UTEX_B_3156 geneContig_14 694116..694478 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
exon_3195_1exon_3195_1Tribonema minus UTEX_B_3156 exonContig_14 694116..694478 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
CDS_3195CDS_3195Tribonema minus UTEX_B_3156 CDSContig_14 694116..694478 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|152148Trimin1|152148|gw1.14.229.1Tribonema minus UTEX_B_3156 polypeptideContig_14 694116..694478 +


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>mRNA_3195 ID=mRNA_3195|Name=jgi.p|Trimin1|152148|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=363bp|location=Sequence derived from alignment at Contig_14:694116..694478+ (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon.  
GTGATTTTGGATACACGCGAATCACTAGATTCTCCGCTCATTGGCCCGAC
AGTACAGCAAGTCGCTAGTGACATGCCATCAGTCAAGGGTGGAGATGACC
TTTTTGTAGCCCCACTGGCAATTCCAAGACTGCCACGGAGGCAGTATTTC
CTATTTGCTCCTGCAATATATACAGACGACATCAACAAAAATGATAGAGA
AAGATGCGACACACTGTATATAGACGTGAAGCAGGCTATTTTTCAGGGAA
TTGAGTTGCTGCTACGAGCGAGGGAGAGCGACTTCTATGGTGATCCTGTC
CGACGGCTTGCCTATGAGGCACTGTCAGGGGGCAAACCAGCACCGACGTT
CCCGCTCTATGTT
back to top

protein sequence of jgi.p|Trimin1|152148

>Trimin1|152148|gw1.14.229.1 ID=Trimin1|152148|gw1.14.229.1|Name=jgi.p|Trimin1|152148|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=121bp
VILDTRESLDSPLIGPTVQQVASDMPSVKGGDDLFVAPLAIPRLPRRQYF
LFAPAIYTDDINKNDRERCDTLYIDVKQAIFQGIELLLRARESDFYGDPV
RRLAYEALSGGKPAPTFPLYV
back to top

mRNA from alignment at Contig_14:694116..694478+

Legend: exonpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_3195 ID=mRNA_3195|Name=jgi.p|Trimin1|152148|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=363bp|location=Sequence derived from alignment at Contig_14:694116..694478+ (Tribonema minus UTEX_B_3156 )
GTGATTTTGGATACACGCGAATCACTAGATTCTCCGCTCATTGGCCCGAC AGTACAGCAAGTCGCTAGTGACATGCCATCAGTCAAGGGTGGAGATGACC TTTTTGTAGCCCCACTGGCAATTCCAAGACTGCCACGGAGGCAGTATTTC CTATTTGCTCCTGCAATATATACAGACGACATCAACAAAAATGATAGAGA AAGATGCGACACACTGTATATAGACGTGAAGCAGGCTATTTTTCAGGGAA TTGAGTTGCTGCTACGAGCGAGGGAGAGCGACTTCTATGGTGATCCTGTC CGACGGCTTGCCTATGAGGCACTGTCAGGGGGCAAACCAGCACCGACGTT CCCGCTCTATGTT
back to top

Coding sequence (CDS) from alignment at Contig_14:694116..694478+

>mRNA_3195 ID=mRNA_3195|Name=jgi.p|Trimin1|152148|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=363bp|location=Sequence derived from alignment at Contig_14:694116..694478+ (Tribonema minus UTEX_B_3156 )
GTGATTTTGGATACACGCGAATCACTAGATTCTCCGCTCATTGGCCCGAC
AGTACAGCAAGTCGCTAGTGACATGCCATCAGTCAAGGGTGGAGATGACC
TTTTTGTAGCCCCACTGGCAATTCCAAGACTGCCACGGAGGCAGTATTTC
CTATTTGCTCCTGCAATATATACAGACGACATCAACAAAAATGATAGAGA
AAGATGCGACACACTGTATATAGACGTGAAGCAGGCTATTTTTCAGGGAA
TTGAGTTGCTGCTACGAGCGAGGGAGAGCGACTTCTATGGTGATCCTGTC
CGACGGCTTGCCTATGAGGCACTGTCAGGGGGCAAACCAGCACCGACGTT
CCCGCTCTATGTT
back to top