mRNA_3195 (mRNA) Tribonema minus UTEX_B_3156
Overview
Homology
BLAST of jgi.p|Trimin1|152148 vs. uniprot
Match: A0A835ZE47_9STRA (Uncharacterized protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZE47_9STRA) HSP 1 Score: 243 bits (620), Expect = 1.830e-81 Identity = 121/121 (100.00%), Postives = 121/121 (100.00%), Query Frame = 1 Query: 1 VILDTRESLDSPLIGPTVQQVASDMPSVKGGDDLFVAPLAIPRLPRRQYFLFAPAIYTDDINKNDRERCDTLYIDVKQAIFQGIELLLRARESDFYGDPVRRLAYEALSGGKPAPTFPLYV 363 VILDTRESLDSPLIGPTVQQVASDMPSVKGGDDLFVAPLAIPRLPRRQYFLFAPAIYTDDINKNDRERCDTLYIDVKQAIFQGIELLLRARESDFYGDPVRRLAYEALSGGKPAPTFPLYV Sbjct: 1 VILDTRESLDSPLIGPTVQQVASDMPSVKGGDDLFVAPLAIPRLPRRQYFLFAPAIYTDDINKNDRERCDTLYIDVKQAIFQGIELLLRARESDFYGDPVRRLAYEALSGGKPAPTFPLYV 121
BLAST of jgi.p|Trimin1|152148 vs. uniprot
Match: A0A835Z8H3_9STRA (Alpha/beta-hydrolase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z8H3_9STRA) HSP 1 Score: 239 bits (610), Expect = 2.110e-73 Identity = 119/121 (98.35%), Postives = 120/121 (99.17%), Query Frame = 1 Query: 1 VILDTRESLDSPLIGPTVQQVASDMPSVKGGDDLFVAPLAIPRLPRRQYFLFAPAIYTDDINKNDRERCDTLYIDVKQAIFQGIELLLRARESDFYGDPVRRLAYEALSGGKPAPTFPLYV 363 VILDTRESLDSPLIGPTVQQVASDMPSV+GGDDLFVAPLAIPRLPRRQYFLFAPAIYTDDINKNDRERCDTLYIDVKQAIFQGIELLLRARESDFY DPVRRLAYEALSGGKPAPTFPLYV Sbjct: 535 VILDTRESLDSPLIGPTVQQVASDMPSVRGGDDLFVAPLAIPRLPRRQYFLFAPAIYTDDINKNDRERCDTLYIDVKQAIFQGIELLLRARESDFYDDPVRRLAYEALSGGKPAPTFPLYV 655
BLAST of jgi.p|Trimin1|152148 vs. uniprot
Match: A0A8J9R9F4_9CHLO (Acyltransferase-like protein At1g54570, chloroplastic n=1 Tax=Coccomyxa sp. Obi TaxID=2315456 RepID=A0A8J9R9F4_9CHLO) HSP 1 Score: 89.7 bits (221), Expect = 1.910e-18 Identity = 52/127 (40.94%), Postives = 73/127 (57.48%), Query Frame = 1 Query: 1 VILDTRESLDSPLIGPTVQQVA-SDMPSVKGG-------DDLFVAPLAIPRLPRRQYFLFAPAIYTDDINKNDRERCDTLYIDVKQAIFQGIELLLRARESDFYGDPVRRLAYEALSGGKPAPTFPL 357 ++LD E + P+IG ++Q A +++P + G +DLF+AP A+P+ P+R Y+ F I T + +D R LY VK + GI LLR RE D Y + R+ YEA SGGK APTFPL Sbjct: 645 MLLDPAEIRNLPIIGGLIEQRARNNIPQARRGVSEDKALEDLFIAPFAVPKAPQRFYYFFGKPIETSRADLDDPARVSQLYRQVKGEVESGISFLLRNRERDPYNHFLPRVLYEAASGGKQAPTFPL 771
BLAST of jgi.p|Trimin1|152148 vs. uniprot
Match: I0Z307_COCSC (Alpha/beta-hydrolase n=1 Tax=Coccomyxa subellipsoidea (strain C-169) TaxID=574566 RepID=I0Z307_COCSC) HSP 1 Score: 85.9 bits (211), Expect = 4.180e-17 Identity = 51/127 (40.16%), Postives = 71/127 (55.91%), Query Frame = 1 Query: 1 VILDTRESLDSPLIGPTVQQVA-SDMPSVKGG-------DDLFVAPLAIPRLPRRQYFLFAPAIYTDDINKNDRERCDTLYIDVKQAIFQGIELLLRARESDFYGDPVRRLAYEALSGGKPAPTFPL 357 ++L+ E + P IG ++Q A + +P + G +DLF+AP A+P+ P+R Y+LF I T + +D R LY VK + GI LLR R+ D Y + R YEA SGGK APTFPL Sbjct: 522 MLLEPAEIRNLPFIGGMIEQRARNSIPQARRGVSEDKELEDLFIAPFAVPKAPQRFYYLFGKPIETSRADLDDPARVGHLYRQVKGEVESGISFLLRNRQRDPYNHFLPRALYEAASGGKQAPTFPL 648
BLAST of jgi.p|Trimin1|152148 vs. uniprot
Match: A0A0M0K5E1_9EUKA (Hydrolase_4 domain-containing protein n=1 Tax=Chrysochromulina tobinii TaxID=1460289 RepID=A0A0M0K5E1_9EUKA) HSP 1 Score: 72.0 bits (175), Expect = 3.030e-12 Identity = 44/120 (36.67%), Postives = 67/120 (55.83%), Query Frame = 1 Query: 1 VILDTRESLDSPLIGPTVQQVASDMPSVKGGDDLFVAPLAIPRLPRRQYFLFAPAIYTDDINKNDRERCDTLYIDVKQAIFQGIELLLRARESDFYGDPVRRLAYEAL-SGGKPAPTFPL 357 ++LD E L P++G V Q A+ P + G+ FVAP+++PR+P R YFLF I T ++ D+ C LY V+ + ++ LL R+ D + + R+A EA K AP+FPL Sbjct: 587 MLLDADELLSLPVLGQRVAQSAARTPVGRPGER-FVAPVSVPRVPGRYYFLFGAPIETRGVDPTDKAACAALYASVRAELEGCVDYLLEKRKHDPWEAALPRVAVEASWDFAKQAPSFPL 705
BLAST of jgi.p|Trimin1|152148 vs. uniprot
Match: A0A7S0XKY5_9CHLO (Hypothetical protein n=1 Tax=Ostreococcus mediterraneus TaxID=1486918 RepID=A0A7S0XKY5_9CHLO) HSP 1 Score: 71.6 bits (174), Expect = 4.100e-12 Identity = 42/122 (34.43%), Postives = 65/122 (53.28%), Query Frame = 1 Query: 4 ILDTRESLDSPLIGPTVQQVASDMPSVKGGDD------LFVAPLAIPRLPRRQYFLFAPAIYTDDINKNDRERCDTLYIDVKQAIFQGIELLLRARESDFYGDPVRRLAYEALSGGKPAPTF 351 I+ + L + + G +V++ A+ MP + DD LF+ P+A+P++P R YF F I D++ +D E +Y +VK + GIE L R SD + D RL YE + + APTF Sbjct: 539 IVQDADDLLNGVFGESVRERANKMPKARVNDDFRDDEELFIQPVAVPKIPERFYFRFMAPIDLSDVDLDDEESVKAVYANVKNEVASGIEYLRAKRASDPFKDLAPRLLYERATSAQ-APTF 659
BLAST of jgi.p|Trimin1|152148 vs. uniprot
Match: A0A835SUV5_9CHLO (Uncharacterized protein n=1 Tax=Chlamydomonas schloesseri TaxID=2026947 RepID=A0A835SUV5_9CHLO) HSP 1 Score: 70.9 bits (172), Expect = 7.800e-12 Identity = 44/127 (34.65%), Postives = 66/127 (51.97%), Query Frame = 1 Query: 1 VILDTRESLDSPLIGPTVQQVASDMPSVKGG-------DDLFVAPLAIPRLPRRQYFLFAPAIYTDDINKNDRERCDTLYIDVKQAIFQGIELLLRARESDFYGDPVRRLAYEALSGGKP---APTF 351 ++LD+ + +SPL ++ A+ P + G D+ F+ PL P +P R YFLF + T DR CD +Y +VK + +GI+ LLR R++D Y D + R+ YE P APTF Sbjct: 700 LVLDSDDIRNSPLWSERAREQAAAAPRARVGVAAEAGLDETFIPPLIAPAVPSRWYFLFGRPVATTPDMYRDRAACDQVYAEVKGQVEEGIDYLLRKRQTDPYRDFLGRMLYEQNPPFGPRRVAPTF 826 The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|152148 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 7
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
This mRNA is a part of the following gene feature(s):
The following exon feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
spliced messenger RNA >mRNA_3195 ID=mRNA_3195|Name=jgi.p|Trimin1|152148|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=363bp|location=Sequence derived from alignment at Contig_14:694116..694478+ (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon. GTGATTTTGGATACACGCGAATCACTAGATTCTCCGCTCATTGGCCCGACback to top protein sequence of jgi.p|Trimin1|152148 >Trimin1|152148|gw1.14.229.1 ID=Trimin1|152148|gw1.14.229.1|Name=jgi.p|Trimin1|152148|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=121bp VILDTRESLDSPLIGPTVQQVASDMPSVKGGDDLFVAPLAIPRLPRRQYFback to top mRNA from alignment at Contig_14:694116..694478+ Legend: exonpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_3195 ID=mRNA_3195|Name=jgi.p|Trimin1|152148|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=363bp|location=Sequence derived from alignment at Contig_14:694116..694478+ (Tribonema minus UTEX_B_3156 )back to top Coding sequence (CDS) from alignment at Contig_14:694116..694478+ >mRNA_3195 ID=mRNA_3195|Name=jgi.p|Trimin1|152148|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=363bp|location=Sequence derived from alignment at Contig_14:694116..694478+ (Tribonema minus UTEX_B_3156 )back to top |