mRNA_3186 (mRNA) Tribonema minus UTEX_B_3156

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
Namejgi.p|Trimin1|347644
Unique NamemRNA_3186
TypemRNA
OrganismTribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Homology
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BLAST of jgi.p|Trimin1|347644 vs. uniprot
Match: A0A836CNB6_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CNB6_9STRA)

HSP 1 Score: 234 bits (596), Expect = 4.370e-76
Identity = 147/147 (100.00%), Postives = 147/147 (100.00%), Query Frame = 1 
Query:    1 MEDLDQHIAKRCRSSYDGASDGSSTSSXXXXXXXXXXXXXXXXXXXXRRDCSSRSRETGVALEDTVEADAAVLEWLTSMSGDDGMLKRMAGLCDSSLRKTVVEAYTMMLVNRERTRAAEQAAAQAAAEWEVFQNTSEELAEGPHAQV 441
            MEDLDQHIAKRCRSSYDGASDGSSTSSXXXXXXXXXXXXXXXXXXXXRRDCSSRSRETGVALEDTVEADAAVLEWLTSMSGDDGMLKRMAGLCDSSLRKTVVEAYTMMLVNRERTRAAEQAAAQAAAEWEVFQNTSEELAEGPHAQV
Sbjct:    1 MEDLDQHIAKRCRSSYDGASDGSSTSSXXXXXXXXXXXXXXXXXXXXRRDCSSRSRETGVALEDTVEADAAVLEWLTSMSGDDGMLKRMAGLCDSSLRKTVVEAYTMMLVNRERTRAAEQAAAQAAAEWEVFQNTSEELAEGPHAQV 147
The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|347644 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A836CNB6_9STRA4.370e-76100.00Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Contig_14contigContig_14:637805..639676 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Tribonema minus UTEX_B_31562021-06-17
Properties
Property NameValue
ProteomeIdTrimin1|347644|estExt_Genemark1.C_Ctg_140067
Hectar predicted targeting categoryother localisation
TranscriptId347966
TrackFilteredModels1
ProteinId347644
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|347644gene_3186Tribonema minus UTEX_B_3156 geneContig_14 637805..639676 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
exon_3186_1exon_3186_1Tribonema minus UTEX_B_3156 exonContig_14 637805..638280 +
exon_3186_2exon_3186_2Tribonema minus UTEX_B_3156 exonContig_14 638372..638462 +
exon_3186_3exon_3186_3Tribonema minus UTEX_B_3156 exonContig_14 639647..639676 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
CDS_3186CDS_3186Tribonema minus UTEX_B_3156 CDSContig_14 637805..638248 +


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
UTR3_3186UTR3_3186Tribonema minus UTEX_B_3156 three_prime_UTRContig_14 638249..638280 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|347644Trimin1|347644|estExt_Genemark1.C_Ctg_140067Tribonema minus UTEX_B_3156 polypeptideContig_14 637805..638248 +


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>mRNA_3186 ID=mRNA_3186|Name=jgi.p|Trimin1|347644|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=597bp|location=Sequence derived from alignment at Contig_14:637805..639676+ (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon.  
ATGGAGGATCTGGACCAACACATCGCCAAGAGGTGCCGGTCCAGCTACGA
TGGCGCTAGTGACGGTAGCAGCACCAGCAGCAGCGGCACCGGTGGCGGCA
GCACCAGCAACGGTGGCAGCAGCAGCGGCGGCAGTGCCAGCAGGAGGGAC
TGTAGCAGCCGCAGCCGGGAGACAGGCGTGGCTCTGGAGGATACTGTGGA
AGCGGATGCCGCAGTCTTGGAGTGGCTGACAAGCATGTCGGGTGATGACG
GCATGCTCAAACGCATGGCGGGTCTCTGCGACAGCTCGCTCCGCAAGACG
GTGGTGGAAGCCTACACGATGATGCTGGTGAACAGAGAGAGGACCCGGGC
TGCGGAGCAGGCGGCGGCGCAGGCGGCGGCGGAGTGGGAGGTCTTCCAGA
ACACATCTGAAGAGCTGGCCGAGGGGCCACATGCTCAGGTGTAGAGCACA
AGGATGACGGCAGCGGCTCTTGTCAGATCATGCGCAACAAATTCCTTGCT
GGTGGCAAGAACTTGGGGGCGCTGCTGCTCGCTGATGCTGGGGTTGCTGG
CGACGTCGCAAAGCAAGGTATCTGATCTCGGCGAGACGCTGCTTAGT
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protein sequence of jgi.p|Trimin1|347644

>Trimin1|347644|estExt_Genemark1.C_Ctg_140067 ID=Trimin1|347644|estExt_Genemark1.C_Ctg_140067|Name=jgi.p|Trimin1|347644|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=148bp
MEDLDQHIAKRCRSSYDGASDGSSTSSSGTGGGSTSNGGSSSGGSASRRD
CSSRSRETGVALEDTVEADAAVLEWLTSMSGDDGMLKRMAGLCDSSLRKT
VVEAYTMMLVNRERTRAAEQAAAQAAAEWEVFQNTSEELAEGPHAQV*
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mRNA from alignment at Contig_14:637805..639676+

Legend: exonpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_3186 ID=mRNA_3186|Name=jgi.p|Trimin1|347644|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=1872bp|location=Sequence derived from alignment at Contig_14:637805..639676+ (Tribonema minus UTEX_B_3156 )
ATGGAGGATCTGGACCAACACATCGCCAAGAGGTGCCGGTCCAGCTACGA
TGGCGCTAGTGACGGTAGCAGCACCAGCAGCAGCGGCACCGGTGGCGGCA
GCACCAGCAACGGTGGCAGCAGCAGCGGCGGCAGTGCCAGCAGGAGGGAC
TGTAGCAGCCGCAGCCGGGAGACAGGCGTGGCTCTGGAGGATACTGTGGA
AGCGGATGCCGCAGTCTTGGAGTGGCTGACAAGCATGTCGGGTGATGACG
GCATGCTCAAACGCATGGCGGGTCTCTGCGACAGCTCGCTCCGCAAGACG
GTGGTGGAAGCCTACACGATGATGCTGGTGAACAGAGAGAGGACCCGGGC
TGCGGAGCAGGCGGCGGCGCAGGCGGCGGCGGAGTGGGAGGTCTTCCAGA
ACACATCTGAAGAGCTGGCCGAGGGGCCACATGCTCAGGTGTAGAGCACA
AGGATGACGGCAGCGGCTCTTGTCAGGTACGAGATACAGGATGCTTGATG
CAACTGCATGGGATGGTCTGCTTGGTTTTGAGCTATTGTCACACGCTTTT
GCCGCTTCTGATCACAGATCATGCGCAACAAATTCCTTGCTGGTGGCAAG
AACTTGGGGGCGCTGCTGCTCGCTGATGCTGGGGTTGCTGGCGACGTCGC
AAAGCAAGGTACGCGTCACTGCACTTGCTGAGAAACCCCTCTGTCCTCGA
CAGCCGCGAAGCGGGCATGCACTTCTCCACCCACACGCTCAGTTCTAATT
TCATGGCGTGGCCATAAAGCGCGTAAGTCAGAGCTACATACACAGCTCTG
ATGTCGCCAAAGTTGTAGACGCTGCCTCCTAAAAGGGCCTTTGCAGCTCT
ATTGGCAGTCTTGCAGTGACTGTTGTTGACGATCTTGTTCGATAAACCTC
CTGTATATCCTGCCGCTCCTTGACCCTGGTGGTGCGCTCTCAAGCGTCGC
AGCGCTGCCAGAAACGCTTGTGGTTGACATAGAAGAGGCACTCGGCAAGT
GCCGGAATCCTTCAAGCTCCTGAATTCGATGCTCTGATGAGCAGAGGCGA
CACTGTCATTAGTAACTGCAGCGGCAGCTGCCCCCGTCACAGGCTGACTG
AACTGCGCTGTACCCACAAGCTCTGCCATGCTGCGGCCAGACATGAGCGC
CAGTGCACAGGCTAGTTCGAATGGCTTTGCACGAGGATAGTTAAGAACCG
CATTCATGGTTGTCCACCATGCAGTGGGGTGGAAGTGGCAGCTGCTGCTG
CTGTGACCAATGCTTGGCAACGGCGCTTGCTGCTGCTGCTGCTGCGCACC
GCACCTGCTAGCTCTGCAGTTGTGCTCTTCGCCCACTCTGGGAATTGCTG
CTATGCCAGATCGTGCACTACGTGTTGCAGCAGCTGCTGCAAACTCCTTC
GATGCTTTGGCACTACCATCTCTTGCTGCGGCAGGAGGGCCACCACCGCT
GACGGACGAGGTCGTCGGTGGCGGTGACATATGCGAGTGTGCAGGCGCTA
AGAAAGATGCGTTGGCACTCGTAGGCTGCTCTATGAGTCTCATTGCCTCC
ACATATGGTGGCATCACAATTAGCTTGTGCAGGAATGCATCCGCAGCCCT
ACTCCCCGTGTATGATGGCGCAGGAGGCTGCAACATCCCCTTTGCCATGA
GGTTGTACTGCTCTGCATATGTAAGCTGGTCAAACTCCGCAACCGTTGTG
CGACTGACTGACGGTCTTGTGCTTCTGTGGTAGTGCATGCTGGACTTCTG
GCATTGTTCACTCGCTCCAGCACGTCCGTGATACCAGCCTTGTATTCACT
ACTGCCCTTCATGACGATATCACCATATTGCTGCCACCACAGGTATCTGA
TCTCGGCGAGACGCTGCTTAGT
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Coding sequence (CDS) from alignment at Contig_14:637805..639676+

>mRNA_3186 ID=mRNA_3186|Name=jgi.p|Trimin1|347644|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=444bp|location=Sequence derived from alignment at Contig_14:637805..639676+ (Tribonema minus UTEX_B_3156 )
ATGGAGGATCTGGACCAACACATCGCCAAGAGGTGCCGGTCCAGCTACGA
TGGCGCTAGTGACGGTAGCAGCACCAGCAGCAGCGGCACCGGTGGCGGCA
GCACCAGCAACGGTGGCAGCAGCAGCGGCGGCAGTGCCAGCAGGAGGGAC
TGTAGCAGCCGCAGCCGGGAGACAGGCGTGGCTCTGGAGGATACTGTGGA
AGCGGATGCCGCAGTCTTGGAGTGGCTGACAAGCATGTCGGGTGATGACG
GCATGCTCAAACGCATGGCGGGTCTCTGCGACAGCTCGCTCCGCAAGACG
GTGGTGGAAGCCTACACGATGATGCTGGTGAACAGAGAGAGGACCCGGGC
TGCGGAGCAGGCGGCGGCGCAGGCGGCGGCGGAGTGGGAGGTCTTCCAGA
ACACATCTGAAGAGCTGGCCGAGGGGCCACATGCTCAGGTGTAG
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