mRNA_314 (mRNA) Tribonema minus UTEX_B_3156

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
Namejgi.p|Trimin1|157553
Unique NamemRNA_314
TypemRNA
OrganismTribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Homology
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BLAST of jgi.p|Trimin1|157553 vs. uniprot
Match: A0A835YYG1_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YYG1_9STRA)

HSP 1 Score: 297 bits (760), Expect = 5.450e-102
Identity = 146/146 (100.00%), Postives = 146/146 (100.00%), Query Frame = 1 
Query:    1 MTERNAAAARPATEAARSERLRELLTALGREGVPLRDDSSLCRCFVEGTLSPPMGADEVARTCALHRFLYECTDYEARCRLNLPVMAASLAPSLGSWAAAWCYVKANEAPAIKAAALAAAGGIPDTWPWLSHHRKWQRRESGEGGD 438
            MTERNAAAARPATEAARSERLRELLTALGREGVPLRDDSSLCRCFVEGTLSPPMGADEVARTCALHRFLYECTDYEARCRLNLPVMAASLAPSLGSWAAAWCYVKANEAPAIKAAALAAAGGIPDTWPWLSHHRKWQRRESGEGGD
Sbjct:    1 MTERNAAAARPATEAARSERLRELLTALGREGVPLRDDSSLCRCFVEGTLSPPMGADEVARTCALHRFLYECTDYEARCRLNLPVMAASLAPSLGSWAAAWCYVKANEAPAIKAAALAAAGGIPDTWPWLSHHRKWQRRESGEGGD 146
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BLAST of jgi.p|Trimin1|157553 vs. uniprot
Match: A0A835Z297_9STRA (Uncharacterized protein n=2 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z297_9STRA)

HSP 1 Score: 165 bits (418), Expect = 4.910e-50
Identity = 78/111 (70.27%), Postives = 89/111 (80.18%), Query Frame = 1 
Query:   58 RLRELLTALGREGVPLRDDSSLCRCFVEGTLSPPMGADEVARTCALHRFLYECTDYEARCRLNLPVMAASLAPSLGSWAAAWCYVKANEAPAIKAAALAAAGGIPDTWPWL 390
            RL ELL  L  EGV +RDDSSLCRCF+EGTL+ P+ A+EVA TCALH +LY   DYE RC   LP MAASLAPSLGSWAAAW YVKA+EAPA+K A++ AAGG+PD WPWL
Sbjct:    8 RLAELLRCLEAEGVAMRDDSSLCRCFIEGTLATPLTAEEVAHTCALHVWLYNYCDYEERCERTLPAMAASLAPSLGSWAAAWSYVKAHEAPAVKTASIRAAGGVPDIWPWL 118
The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|157553 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A835YYG1_9STRA5.450e-102100.00Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A835Z297_9STRA4.910e-5070.27Uncharacterized protein n=2 Tax=Tribonema minus Ta... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Contig_3contigContig_3:917584..918024 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Tribonema minus UTEX_B_31562021-06-17
Properties
Property NameValue
ProteomeIdTrimin1|157553|e_gw1.3.439.1
Hectar predicted targeting categoryother localisation
TranscriptId157875
TrackFilteredModels1
ProteinId157553
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|157553gene_314Tribonema minus UTEX_B_3156 geneContig_3 917584..918024 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
exon_314_1exon_314_1Tribonema minus UTEX_B_3156 exonContig_3 917584..918024 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
CDS_314CDS_314Tribonema minus UTEX_B_3156 CDSContig_3 917584..918024 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|157553Trimin1|157553|e_gw1.3.439.1Tribonema minus UTEX_B_3156 polypeptideContig_3 917584..918024 +


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>mRNA_314 ID=mRNA_314|Name=jgi.p|Trimin1|157553|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=441bp|location=Sequence derived from alignment at Contig_3:917584..918024+ (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon.  
ATGACGGAACGCAACGCCGCCGCCGCACGGCCCGCTACGGAGGCGGCCCG
GAGCGAGAGGCTGAGGGAGCTGCTGACGGCGCTGGGGAGGGAGGGGGTGC
CGCTCCGCGACGACAGCTCGCTCTGCCGTTGCTTCGTCGAGGGCACTCTC
AGCCCCCCCATGGGAGCGGACGAGGTCGCACGCACGTGCGCCCTGCACCG
CTTCCTGTACGAATGCACCGACTACGAGGCGAGATGTCGCCTCAACCTGC
CGGTGATGGCCGCCAGCCTCGCGCCGTCGCTGGGATCGTGGGCGGCGGCG
TGGTGCTACGTCAAGGCGAACGAGGCTCCGGCCATCAAGGCCGCTGCACT
CGCCGCGGCGGGAGGGATCCCCGACACGTGGCCGTGGCTGTCGCACCACC
GGAAGTGGCAACGGCGCGAGAGCGGGGAGGGGGGCGACTGA
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protein sequence of jgi.p|Trimin1|157553

>Trimin1|157553|e_gw1.3.439.1 ID=Trimin1|157553|e_gw1.3.439.1|Name=jgi.p|Trimin1|157553|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=147bp
MTERNAAAARPATEAARSERLRELLTALGREGVPLRDDSSLCRCFVEGTL
SPPMGADEVARTCALHRFLYECTDYEARCRLNLPVMAASLAPSLGSWAAA
WCYVKANEAPAIKAAALAAAGGIPDTWPWLSHHRKWQRRESGEGGD*
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mRNA from alignment at Contig_3:917584..918024+

Legend: exonpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_314 ID=mRNA_314|Name=jgi.p|Trimin1|157553|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=441bp|location=Sequence derived from alignment at Contig_3:917584..918024+ (Tribonema minus UTEX_B_3156 )
ATGACGGAACGCAACGCCGCCGCCGCACGGCCCGCTACGGAGGCGGCCCG
GAGCGAGAGGCTGAGGGAGCTGCTGACGGCGCTGGGGAGGGAGGGGGTGC
CGCTCCGCGACGACAGCTCGCTCTGCCGTTGCTTCGTCGAGGGCACTCTC
AGCCCCCCCATGGGAGCGGACGAGGTCGCACGCACGTGCGCCCTGCACCG
CTTCCTGTACGAATGCACCGACTACGAGGCGAGATGTCGCCTCAACCTGC
CGGTGATGGCCGCCAGCCTCGCGCCGTCGCTGGGATCGTGGGCGGCGGCG
TGGTGCTACGTCAAGGCGAACGAGGCTCCGGCCATCAAGGCCGCTGCACT
CGCCGCGGCGGGAGGGATCCCCGACACGTGGCCGTGGCTGTCGCACCACC
GGAAGTGGCAACGGCGCGAGAGCGGGGAGGGGGGCGACTGA
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Coding sequence (CDS) from alignment at Contig_3:917584..918024+

>mRNA_314 ID=mRNA_314|Name=jgi.p|Trimin1|157553|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=441bp|location=Sequence derived from alignment at Contig_3:917584..918024+ (Tribonema minus UTEX_B_3156 )
ATGACGGAACGCAACGCCGCCGCCGCACGGCCCGCTACGGAGGCGGCCCG
GAGCGAGAGGCTGAGGGAGCTGCTGACGGCGCTGGGGAGGGAGGGGGTGC
CGCTCCGCGACGACAGCTCGCTCTGCCGTTGCTTCGTCGAGGGCACTCTC
AGCCCCCCCATGGGAGCGGACGAGGTCGCACGCACGTGCGCCCTGCACCG
CTTCCTGTACGAATGCACCGACTACGAGGCGAGATGTCGCCTCAACCTGC
CGGTGATGGCCGCCAGCCTCGCGCCGTCGCTGGGATCGTGGGCGGCGGCG
TGGTGCTACGTCAAGGCGAACGAGGCTCCGGCCATCAAGGCCGCTGCACT
CGCCGCGGCGGGAGGGATCCCCGACACGTGGCCGTGGCTGTCGCACCACC
GGAAGTGGCAACGGCGCGAGAGCGGGGAGGGGGGCGACTGA
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