mRNA_3138 (mRNA) Tribonema minus UTEX_B_3156

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
Namejgi.p|Trimin1|347614
Unique NamemRNA_3138
TypemRNA
OrganismTribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Homology
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BLAST of jgi.p|Trimin1|347614 vs. uniprot
Match: A0A836CK63_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CK63_9STRA)

HSP 1 Score: 226 bits (576), Expect = 1.790e-72
Identity = 132/132 (100.00%), Postives = 132/132 (100.00%), Query Frame = 3 
Query:  348 METVYDGDDSSDGSDTLLSTPSGSAPVMPTAVAXXXXXXXXXXXAHCQLALATFDAVLHERPALERKRCALAALRAAAEHALGRLHYKAVPASAATAFLWQMTVSLIVAEAAPVDLVVNVNSACKRERSRWM 743
            METVYDGDDSSDGSDTLLSTPSGSAPVMPTAVAXXXXXXXXXXXAHCQLALATFDAVLHERPALERKRCALAALRAAAEHALGRLHYKAVPASAATAFLWQMTVSLIVAEAAPVDLVVNVNSACKRERSRWM
Sbjct:    1 METVYDGDDSSDGSDTLLSTPSGSAPVMPTAVAXXXXXXXXXXXAHCQLALATFDAVLHERPALERKRCALAALRAAAEHALGRLHYKAVPASAATAFLWQMTVSLIVAEAAPVDLVVNVNSACKRERSRWM 132
The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|347614 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A836CK63_9STRA1.790e-72100.00Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Contig_14contigContig_14:236149..238214 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Tribonema minus UTEX_B_31562021-06-17
Properties
Property NameValue
ProteomeIdTrimin1|347614|estExt_Genemark1.C_Ctg_140024
Hectar predicted targeting categoryother localisation
TranscriptId347936
TrackFilteredModels1
ProteinId347614
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|347614gene_3138Tribonema minus UTEX_B_3156 geneContig_14 236149..238214 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|347614Trimin1|347614|estExt_Genemark1.C_Ctg_140024Tribonema minus UTEX_B_3156 polypeptideContig_14 236496..238214 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
exon_3138_1exon_3138_1Tribonema minus UTEX_B_3156 exonContig_14 236149..236548 +
exon_3138_2exon_3138_2Tribonema minus UTEX_B_3156 exonContig_14 237282..237404 +
exon_3138_3exon_3138_3Tribonema minus UTEX_B_3156 exonContig_14 237442..237616 +
exon_3138_4exon_3138_4Tribonema minus UTEX_B_3156 exonContig_14 238167..238214 +


The following five_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
UTR5_3138UTR5_3138Tribonema minus UTEX_B_3156 five_prime_UTRContig_14 236149..236495 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
CDS_3138CDS_3138Tribonema minus UTEX_B_3156 CDSContig_14 236496..236548 +


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>mRNA_3138 ID=mRNA_3138|Name=jgi.p|Trimin1|347614|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=746bp|location=Sequence derived from alignment at Contig_14:236149..238214+ (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon.  
TTCTCCATGGAGGCGCTGACGTCGGGCGGCGGCGCCACCATGCGCAGCCG
CAACAACCTGCGGCGCGGCGCCGGGCACTGAGTGACAGCAGCAGCAGCAG
CGCTCGCCGCGTATAGAATCAAGTGCTGCATGAGCACTGCAATCATGCCC
TCCAGCTGCCGCGCAGACTCGTTGGCTTCTGGACATTACACTCTTGGTGC
ACTGGAGCGAGGCGCCGACACTGAGTGACGGCAGCGGCAGCAGCGCTCAT
CGTGTGAGCTTCGCGTGATTGGCAAGTGCCGGCCAGCCGGCGGCTCAGAT
GCAGAGGAGTGAACGCGGTGTATAGCACGCAACACAAATAAGCCCCGATG
GAAACAGTTTACGATGGTGACGACAGCAGCGACGGCAGCGACACGCTGCT
CAGCACGCCAAGCGGCAGCGCTCCGGTGATGCCGACGGCTGTGGCGGCGG
CGGCAGCGGCAGCAGCAGCAGTGGCGGCAGCGCACTGCCAGCTGGCCCTT
GCGACGTTCGACGCCGTCCTCCACGAGAGGCCGGCACTCGAGCGCAAGCG
TTGCGCACTGGCTGCGCTGCGCGCCGCAGCGGAGCATGCGCTAGGCAGGC
TGCACTACAAGGCAGTGCCGGCGAGCGCAGCCACGGCGTTCTTGTGGCAG
ATGACCGTGTCGCTGATTGTGGCGGAGGCGGCGCCCGTGGACCTCGTTGT
CAACGTCAACAGCGCGTGTAAGCGGGAGCGCAGCCGCTGGATGTAG
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protein sequence of jgi.p|Trimin1|347614

>Trimin1|347614|estExt_Genemark1.C_Ctg_140024 ID=Trimin1|347614|estExt_Genemark1.C_Ctg_140024|Name=jgi.p|Trimin1|347614|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=133bp
METVYDGDDSSDGSDTLLSTPSGSAPVMPTAVAAAAAAAAAVAAAHCQLA
LATFDAVLHERPALERKRCALAALRAAAEHALGRLHYKAVPASAATAFLW
QMTVSLIVAEAAPVDLVVNVNSACKRERSRWM*
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mRNA from alignment at Contig_14:236149..238214+

Legend: exonfive_prime_UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_3138 ID=mRNA_3138|Name=jgi.p|Trimin1|347614|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=2066bp|location=Sequence derived from alignment at Contig_14:236149..238214+ (Tribonema minus UTEX_B_3156 )
TTCTCCATGGAGGCGCTGACGTCGGGCGGCGGCGCCACCATGCGCAGCCG
CAACAACCTGCGGCGCGGCGCCGGGCACTGAGTGACAGCAGCAGCAGCAG
CGCTCGCCGCGTATAGAATCAAGTGCTGCATGAGCACTGCAATCATGCCC
TCCAGCTGCCGCGCAGACTCGTTGGCTTCTGGACATTACACTCTTGGTGC
ACTGGAGCGAGGCGCCGACACTGAGTGACGGCAGCGGCAGCAGCGCTCAT
CGTGTGAGCTTCGCGTGATTGGCAAGTGCCGGCCAGCCGGCGGCTCAGAT
GCAGAGGAGTGAACGCGGTGTATAGCACGCAACACAAATAAGCCCCGATG
GAAACAGTTTACGATGGTGACGACAGCAGCGACGGCAGCGACACGCTGCT
GTGAGTTGCTTGCCGAAGGCCACAAGCGATGGTTGGCACTTGTTTTCAAT
TCAAGTATGCTTGAGCACTGCCTTCATGCCCCCCCAGCTGCTGCTCATGT
TCCGCTCTTTGTACATGTTGTGTGGTTCTGGAGCTGCTGAGCTCTGCATT
GTACTTCATCTGTGGTATGATGCGTTGCTGGCGTCATGCATTGAGTTTGC
TGCGGCTGCTACTGCCCCGCACCTTGAATCAGCACAGCTGGTCTTTAAGG
CATGCACACATACGTCAGCGCCGGTAGGGTGATTGCGTCCAGCGCACAAA
CTAGCCTTCCGGACGGAAAACATGCAGCCACTTGTGCATTGCAGCCTTGG
GGCCACAAGTGCCCTTGCAAGGACATGACCCTTCTTGACGTGGCAAATAT
CACGTGGGGGGCACGTCAGTGGCACAGTGGTGTGTATGGGTATCACGATC
GGAAACTGCCTGTTTTTCAAGCACCGTGTTTGTCTGTGCATCTCATGTGC
GTTGTGCGGATTTTGCACGCGCGTTTCCTCTGTGGGCCTGCAATGCCTCA
GGCACAACATCTACACCGGCAATCGTAAGCACAAAAAGCACTGAGACTCT
CTGGTCCCGCGCACGACCAGGAGCTGACTGACAGGCTCTCTGGCACCGCG
ACTCACAAGGAACGCGTGCAGTTGCTGGAGACTTTGGTGCATGCATACAC
GAGCGCCACAATCACCGTTGCGCGGCGCGGCAGCAGCACGCCAAGCGGCA
GCGCTCCGGTGATGCCGACGGCTGTGGCGGCGGCGGCAGCGGCAGCAGCA
GCAGTGGCGGCAGCGCACTGCCAGCTGGCCCTTGCGACGTTCGACGCCGT
CCTCCAGTATGTGCACACGGCAGCACCTGTAGTGCGCCGACAGCGAGAGG
CCGGCACTCGAGCGCAAGCGTTGCGCACTGGCTGCGCTGCGCGCCGCAGC
GGAGCATGCGCTAGGCAGGCTGCACTACAAGGCAGTGCCGGCGAGCGCAG
CCACGGCGTTCTTGTGGCAGATGACCGTGTCGCTGATTGTGGCGGAGGCG
GCGCCCGTGGACCTCGTTGTGAGGTGCGCGGCTGACGTCAAAGCATCGCG
GTCTCATGAGTCCCAAGGCTGGAAGCCACTGGCAGGGCTTGCGCCGCAGT
GCGCTGTCATTGGCTCAGCAGCCTGTGCAGCGGCTCAACGTGTATGGATG
CACGCCCAGGTCTTGTCTGACGCCTGAAGGTCAGGTCATGGTAGTGACAG
GTGTGTCAGACCTGGCGTGTGCATGAGTTCATCACGCCTGAGCTGAGTTG
TGAATGTGCAGGTCAGGTTCCCAGTCACCGATGCAAGCAGCGGTGGGCAC
CAGTGATGTCCATGAGTAGCATGCGGCGTGTGGCAGCCGCCACCTGCGGC
GATGTAACGCAGGCGTCAACAAAGCAATGTGACCCAGCAACTGGCAAACA
CTGGATCCCCCCCCCCCCTCCCTTCCACTCACACTCAAGTCCCCGGGACC
CCCAGTTGCATCTACTGCTACAGTGTGCTTTCACTTCTGCGCCCTCTTCC
TCCCCCCCCCCATGCGTGCTTTTCGCACGGCGCGAGTAACGTCATGCGGT
TTCTGCGTCAACTCTAAGGTCAACGTCAACAGCGCGTGTAAGCGGGAGCG
CAGCCGCTGGATGTAG
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Coding sequence (CDS) from alignment at Contig_14:236149..238214+

>mRNA_3138 ID=mRNA_3138|Name=jgi.p|Trimin1|347614|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=399bp|location=Sequence derived from alignment at Contig_14:236149..238214+ (Tribonema minus UTEX_B_3156 )
ATGGAAACAGTTTACGATGGTGACGACAGCAGCGACGGCAGCGACACGCT
GCTCAGCACGCCAAGCGGCAGCGCTCCGGTGATGCCGACGGCTGTGGCGG
CGGCGGCAGCGGCAGCAGCAGCAGTGGCGGCAGCGCACTGCCAGCTGGCC
CTTGCGACGTTCGACGCCGTCCTCCACGAGAGGCCGGCACTCGAGCGCAA
GCGTTGCGCACTGGCTGCGCTGCGCGCCGCAGCGGAGCATGCGCTAGGCA
GGCTGCACTACAAGGCAGTGCCGGCGAGCGCAGCCACGGCGTTCTTGTGG
CAGATGACCGTGTCGCTGATTGTGGCGGAGGCGGCGCCCGTGGACCTCGT
TGTCAACGTCAACAGCGCGTGTAAGCGGGAGCGCAGCCGCTGGATGTAG
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