mRNA_2929 (mRNA) Tribonema minus UTEX_B_3156

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
Namejgi.p|Trimin1|148356
Unique NamemRNA_2929
TypemRNA
OrganismTribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Homology
BLAST of jgi.p|Trimin1|148356 vs. uniprot
Match: A0A835Z7J0_9STRA (Heat shock transcription factor 4 (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z7J0_9STRA)

HSP 1 Score: 163 bits (412), Expect = 4.320e-51
Identity = 78/78 (100.00%), Postives = 78/78 (100.00%), Query Frame = 1
Query:    1 CGWGAGGASIVIHDVHTFTSAVLPQYFNHGNFQSFVRQLNMYNFKKTVAPGLSLCEFSHPVFRRGRAEQLRQMKRKVS 234
            CGWGAGGASIVIHDVHTFTSAVLPQYFNHGNFQSFVRQLNMYNFKKTVAPGLSLCEFSHPVFRRGRAEQLRQMKRKVS
Sbjct:    1 CGWGAGGASIVIHDVHTFTSAVLPQYFNHGNFQSFVRQLNMYNFKKTVAPGLSLCEFSHPVFRRGRAEQLRQMKRKVS 78          
BLAST of jgi.p|Trimin1|148356 vs. uniprot
Match: A0A835Z0G6_9STRA (HSF-type DNA-binding-domain-containing protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z0G6_9STRA)

HSP 1 Score: 96.7 bits (239), Expect = 1.860e-24
Identity = 47/76 (61.84%), Postives = 56/76 (73.68%), Query Frame = 1
Query:    1 CGWGAGGASIVIHDVHTFTSAVLPQYFNHGNFQSFVRQLNMYNFKKTVAPGLSLCEFSHPVFRRGRAEQLRQMKRK 228
            CGW A G +++IH++  F+  VLPQYF HGNFQSFVRQLNMYNFKKTVA   +  EF HP+FRRG    L  +KRK
Sbjct:   24 CGWSAKGDAVIIHNLRDFSDRVLPQYFKHGNFQSFVRQLNMYNFKKTVADPTN-GEFKHPLFRRGMRHVLHLIKRK 98          
BLAST of jgi.p|Trimin1|148356 vs. uniprot
Match: A0A7S2SUP5_9STRA (Hypothetical protein (Fragment) n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2SUP5_9STRA)

HSP 1 Score: 90.9 bits (224), Expect = 1.830e-20
Identity = 43/76 (56.58%), Postives = 55/76 (72.37%), Query Frame = 1
Query:    1 CGWGAGGASIVIHDVHTFTSAVLPQYFNHGNFQSFVRQLNMYNFKKTVAPGLSLCEFSHPVFRRGRAEQLRQMKRK 228
            CGWG  G ++VIH +  F +AVLP+YF H N+ SFVRQLNMY+F KTVA    + EF HP F+RGR + L+ +KRK
Sbjct:   73 CGWGRNGQTVVIHRISDFAAAVLPKYFKHSNYASFVRQLNMYDFHKTVA-NPQIAEFHHPYFQRGRPDLLQLIKRK 147          
BLAST of jgi.p|Trimin1|148356 vs. uniprot
Match: A0A835YSA2_9STRA (HSF-type DNA-binding-domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YSA2_9STRA)

HSP 1 Score: 87.0 bits (214), Expect = 2.880e-20
Identity = 45/77 (58.44%), Postives = 50/77 (64.94%), Query Frame = 1
Query:    1 CGWGAGGASIVIHDVHTFTSAVLPQYFNHGNFQSFVRQLNMYNFKKTVAPGLSLCEFSHPVFRRGRAEQLRQMKRKV 231
            CGWG  G +IVI  +  F S VLPQYF H NFQSFVRQLNMYNF KTV       EF H  FR+GR + L  +KRK 
Sbjct:   24 CGWGVNGDTIVIFKIAEFASEVLPQYFKHSNFQSFVRQLNMYNFHKTVQDPTH-GEFQHQYFRKGRPDLLHLIKRKA 99          
BLAST of jgi.p|Trimin1|148356 vs. uniprot
Match: A0A4D9CUD5_9STRA (HSF_DOMAIN domain-containing protein n=1 Tax=Nannochloropsis salina CCMP1776 TaxID=1027361 RepID=A0A4D9CUD5_9STRA)

HSP 1 Score: 90.1 bits (222), Expect = 2.520e-19
Identity = 48/78 (61.54%), Postives = 55/78 (70.51%), Query Frame = 1
Query:    1 CGWGAGGASIVIHDVHTFTSAVLPQYFNHGNFQSFVRQLNMYNFKKTVAPGLSLCEFSHPVFRRGRAEQLRQMKRKVS 234
            CGWGAGG +IVI  V  F + VLP+YF H NFQSFVRQLNMY+F KTV    S  EF H  FR+GR + L  +KRKVS
Sbjct:  100 CGWGAGGGTIVIKKVPEFAARVLPRYFKHSNFQSFVRQLNMYDFHKTVQDP-SHGEFRHEFFRQGRRDLLPLIKRKVS 176          
BLAST of jgi.p|Trimin1|148356 vs. uniprot
Match: A0A3F2S375_9STRA (HSF_DOMAIN domain-containing protein n=1 Tax=Phytophthora kernoviae TaxID=325452 RepID=A0A3F2S375_9STRA)

HSP 1 Score: 88.6 bits (218), Expect = 7.820e-19
Identity = 43/78 (55.13%), Postives = 53/78 (67.95%), Query Frame = 1
Query:    1 CGWGAGGASIVIHDVHTFTSAVLPQYFNHGNFQSFVRQLNMYNFKKTVAPGLSLCEFSHPVFRRGRAEQLRQMKRKVS 234
            CGW A G +I++  + TF S VLP++F H NF SFVRQLN+Y F KTV     L EF HP F+RGR + L  +KRKVS
Sbjct:   47 CGWNANGDTIIVSQLETFVSMVLPRFFKHRNFPSFVRQLNLYGFHKTVLDSKRL-EFQHPYFKRGRPDLLHHIKRKVS 123          
BLAST of jgi.p|Trimin1|148356 vs. uniprot
Match: A0A3R7JRK0_9STRA (Uncharacterized protein n=3 Tax=Phytophthora kernoviae TaxID=325452 RepID=A0A3R7JRK0_9STRA)

HSP 1 Score: 88.6 bits (218), Expect = 9.120e-19
Identity = 43/78 (55.13%), Postives = 53/78 (67.95%), Query Frame = 1
Query:    1 CGWGAGGASIVIHDVHTFTSAVLPQYFNHGNFQSFVRQLNMYNFKKTVAPGLSLCEFSHPVFRRGRAEQLRQMKRKVS 234
            CGW A G +I++  + TF S VLP++F H NF SFVRQLN+Y F KTV     L EF HP F+RGR + L  +KRKVS
Sbjct:   47 CGWNANGDTIIVSQLETFVSMVLPRFFKHRNFPSFVRQLNLYGFHKTVLDSKRL-EFQHPYFKRGRPDLLHHIKRKVS 123          
BLAST of jgi.p|Trimin1|148356 vs. uniprot
Match: A0A7S0MGE9_9CRYP (Hypothetical protein (Fragment) n=1 Tax=Cryptomonas curvata TaxID=233186 RepID=A0A7S0MGE9_9CRYP)

HSP 1 Score: 84.7 bits (208), Expect = 1.310e-18
Identity = 42/76 (55.26%), Postives = 53/76 (69.74%), Query Frame = 1
Query:    7 WGAGGASIVIHDVHTFTSAVLPQYFNHGNFQSFVRQLNMYNFKKTVAPGLSLCEFSHPVFRRGRAEQLRQMKRKVS 234
            W A G SI+I D   F+S +LP+YF H NF SFVRQLN+Y F KT     S CEFSHPVFRRG  +  ++++RKV+
Sbjct:   53 WSATGESILIIDPPRFSSQILPRYFKHSNFASFVRQLNLYGFHKTSQESDS-CEFSHPVFRRGNEQTFKEIRRKVA 127          
BLAST of jgi.p|Trimin1|148356 vs. uniprot
Match: A0A0P1AL35_PLAHL (HSF_DOMAIN domain-containing protein n=1 Tax=Plasmopara halstedii TaxID=4781 RepID=A0A0P1AL35_PLAHL)

HSP 1 Score: 87.8 bits (216), Expect = 1.540e-18
Identity = 42/78 (53.85%), Postives = 53/78 (67.95%), Query Frame = 1
Query:    1 CGWGAGGASIVIHDVHTFTSAVLPQYFNHGNFQSFVRQLNMYNFKKTVAPGLSLCEFSHPVFRRGRAEQLRQMKRKVS 234
            CGW   G +I++  + TF + VLP++F H NF SFVRQLN+Y F KTV     L EF HP F+RGR + L Q+KRKVS
Sbjct:   46 CGWNVNGDTIIVSQLETFVAMVLPRFFKHRNFPSFVRQLNLYGFHKTVLDSKRL-EFQHPYFKRGRPDLLHQIKRKVS 122          
BLAST of jgi.p|Trimin1|148356 vs. uniprot
Match: A0A484EF42_BRELC (HSF_DOMAIN domain-containing protein n=1 Tax=Bremia lactucae TaxID=4779 RepID=A0A484EF42_BRELC)

HSP 1 Score: 87.8 bits (216), Expect = 1.650e-18
Identity = 42/78 (53.85%), Postives = 53/78 (67.95%), Query Frame = 1
Query:    1 CGWGAGGASIVIHDVHTFTSAVLPQYFNHGNFQSFVRQLNMYNFKKTVAPGLSLCEFSHPVFRRGRAEQLRQMKRKVS 234
            CGW A G +I++  + TF + VLP++F H NF SFVRQLN+Y F KTV     L EF HP F+RGR + L  +KRKVS
Sbjct:   62 CGWNANGDTIIVSQLETFVATVLPRFFKHRNFPSFVRQLNLYGFHKTVLDSKRL-EFQHPYFKRGRPDLLHHIKRKVS 138          
The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|148356 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A835Z7J0_9STRA4.320e-51100.00Heat shock transcription factor 4 (Fragment) n=1 T... [more]
A0A835Z0G6_9STRA1.860e-2461.84HSF-type DNA-binding-domain-containing protein (Fr... [more]
A0A7S2SUP5_9STRA1.830e-2056.58Hypothetical protein (Fragment) n=1 Tax=Rhizochrom... [more]
A0A835YSA2_9STRA2.880e-2058.44HSF-type DNA-binding-domain-containing protein n=1... [more]
A0A4D9CUD5_9STRA2.520e-1961.54HSF_DOMAIN domain-containing protein n=1 Tax=Nanno... [more]
A0A3F2S375_9STRA7.820e-1955.13HSF_DOMAIN domain-containing protein n=1 Tax=Phyto... [more]
A0A3R7JRK0_9STRA9.120e-1955.13Uncharacterized protein n=3 Tax=Phytophthora kerno... [more]
A0A7S0MGE9_9CRYP1.310e-1855.26Hypothetical protein (Fragment) n=1 Tax=Cryptomona... [more]
A0A0P1AL35_PLAHL1.540e-1853.85HSF_DOMAIN domain-containing protein n=1 Tax=Plasm... [more]
A0A484EF42_BRELC1.650e-1853.85HSF_DOMAIN domain-containing protein n=1 Tax=Bremi... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Contig_16contigContig_16:136476..136709 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Tribonema minus UTEX_B_31562021-06-17
Properties
Property NameValue
ProteomeIdTrimin1|148356|gw1.16.184.1
BRITEko00000,ko00001,ko03000
KEGG Pathwayko04212,ko05134,map04212,map05134
KEGG koko:K09414
Descriptionheat shock factor
COG categoryK
Max annot lvl4776|Peronosporales
EggNOG OGsCOG5169@1|root,KOG0627@2759|Eukaryota,3Q91H@4776|Peronosporales
Evalue1.66e-18
Seed ortholog164328.Phyra75445
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionHeat Shock transcription factor
Ec32 orthologEc-18_001660.1
TranscriptId148678
TrackFilteredModels1
ProteinId148356
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|148356gene_2929Tribonema minus UTEX_B_3156 geneContig_16 136476..136709 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
exon_2929_1exon_2929_1Tribonema minus UTEX_B_3156 exonContig_16 136476..136709 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
CDS_2929CDS_2929Tribonema minus UTEX_B_3156 CDSContig_16 136476..136709 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|148356Trimin1|148356|gw1.16.184.1Tribonema minus UTEX_B_3156 polypeptideContig_16 136476..136709 +


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>mRNA_2929 ID=mRNA_2929|Name=jgi.p|Trimin1|148356|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=234bp|location=Sequence derived from alignment at Contig_16:136476..136709+ (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon.  
TGCGGCTGGGGCGCCGGCGGCGCTTCCATCGTCATCCACGACGTGCACAC
GTTCACATCCGCGGTGCTGCCGCAGTACTTCAACCACGGCAACTTCCAGT
CGTTCGTGCGGCAGCTCAACATGTACAACTTCAAGAAGACGGTCGCGCCC
GGCCTGTCGCTGTGCGAGTTCAGCCACCCGGTGTTCCGCCGCGGCAGGGC
GGAGCAGCTGCGCCAGATGAAGCGCAAGGTGAGC
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protein sequence of jgi.p|Trimin1|148356

>Trimin1|148356|gw1.16.184.1 ID=Trimin1|148356|gw1.16.184.1|Name=jgi.p|Trimin1|148356|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=78bp
CGWGAGGASIVIHDVHTFTSAVLPQYFNHGNFQSFVRQLNMYNFKKTVAP
GLSLCEFSHPVFRRGRAEQLRQMKRKVS
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mRNA from alignment at Contig_16:136476..136709+

Legend: exonpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_2929 ID=mRNA_2929|Name=jgi.p|Trimin1|148356|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=234bp|location=Sequence derived from alignment at Contig_16:136476..136709+ (Tribonema minus UTEX_B_3156 )
TGCGGCTGGGGCGCCGGCGGCGCTTCCATCGTCATCCACGACGTGCACAC GTTCACATCCGCGGTGCTGCCGCAGTACTTCAACCACGGCAACTTCCAGT CGTTCGTGCGGCAGCTCAACATGTACAACTTCAAGAAGACGGTCGCGCCC GGCCTGTCGCTGTGCGAGTTCAGCCACCCGGTGTTCCGCCGCGGCAGGGC GGAGCAGCTGCGCCAGATGAAGCGCAAGGTGAGC
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Coding sequence (CDS) from alignment at Contig_16:136476..136709+

>mRNA_2929 ID=mRNA_2929|Name=jgi.p|Trimin1|148356|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=234bp|location=Sequence derived from alignment at Contig_16:136476..136709+ (Tribonema minus UTEX_B_3156 )
TGCGGCTGGGGCGCCGGCGGCGCTTCCATCGTCATCCACGACGTGCACAC
GTTCACATCCGCGGTGCTGCCGCAGTACTTCAACCACGGCAACTTCCAGT
CGTTCGTGCGGCAGCTCAACATGTACAACTTCAAGAAGACGGTCGCGCCC
GGCCTGTCGCTGTGCGAGTTCAGCCACCCGGTGTTCCGCCGCGGCAGGGC
GGAGCAGCTGCGCCAGATGAAGCGCAAGGTGAGC
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