mRNA_2929 (mRNA) Tribonema minus UTEX_B_3156
Overview
Homology
BLAST of jgi.p|Trimin1|148356 vs. uniprot
Match: A0A835Z7J0_9STRA (Heat shock transcription factor 4 (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z7J0_9STRA) HSP 1 Score: 163 bits (412), Expect = 4.320e-51 Identity = 78/78 (100.00%), Postives = 78/78 (100.00%), Query Frame = 1 Query: 1 CGWGAGGASIVIHDVHTFTSAVLPQYFNHGNFQSFVRQLNMYNFKKTVAPGLSLCEFSHPVFRRGRAEQLRQMKRKVS 234 CGWGAGGASIVIHDVHTFTSAVLPQYFNHGNFQSFVRQLNMYNFKKTVAPGLSLCEFSHPVFRRGRAEQLRQMKRKVS Sbjct: 1 CGWGAGGASIVIHDVHTFTSAVLPQYFNHGNFQSFVRQLNMYNFKKTVAPGLSLCEFSHPVFRRGRAEQLRQMKRKVS 78
BLAST of jgi.p|Trimin1|148356 vs. uniprot
Match: A0A835Z0G6_9STRA (HSF-type DNA-binding-domain-containing protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z0G6_9STRA) HSP 1 Score: 96.7 bits (239), Expect = 1.860e-24 Identity = 47/76 (61.84%), Postives = 56/76 (73.68%), Query Frame = 1 Query: 1 CGWGAGGASIVIHDVHTFTSAVLPQYFNHGNFQSFVRQLNMYNFKKTVAPGLSLCEFSHPVFRRGRAEQLRQMKRK 228 CGW A G +++IH++ F+ VLPQYF HGNFQSFVRQLNMYNFKKTVA + EF HP+FRRG L +KRK Sbjct: 24 CGWSAKGDAVIIHNLRDFSDRVLPQYFKHGNFQSFVRQLNMYNFKKTVADPTN-GEFKHPLFRRGMRHVLHLIKRK 98
BLAST of jgi.p|Trimin1|148356 vs. uniprot
Match: A0A7S2SUP5_9STRA (Hypothetical protein (Fragment) n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2SUP5_9STRA) HSP 1 Score: 90.9 bits (224), Expect = 1.830e-20 Identity = 43/76 (56.58%), Postives = 55/76 (72.37%), Query Frame = 1 Query: 1 CGWGAGGASIVIHDVHTFTSAVLPQYFNHGNFQSFVRQLNMYNFKKTVAPGLSLCEFSHPVFRRGRAEQLRQMKRK 228 CGWG G ++VIH + F +AVLP+YF H N+ SFVRQLNMY+F KTVA + EF HP F+RGR + L+ +KRK Sbjct: 73 CGWGRNGQTVVIHRISDFAAAVLPKYFKHSNYASFVRQLNMYDFHKTVA-NPQIAEFHHPYFQRGRPDLLQLIKRK 147
BLAST of jgi.p|Trimin1|148356 vs. uniprot
Match: A0A835YSA2_9STRA (HSF-type DNA-binding-domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YSA2_9STRA) HSP 1 Score: 87.0 bits (214), Expect = 2.880e-20 Identity = 45/77 (58.44%), Postives = 50/77 (64.94%), Query Frame = 1 Query: 1 CGWGAGGASIVIHDVHTFTSAVLPQYFNHGNFQSFVRQLNMYNFKKTVAPGLSLCEFSHPVFRRGRAEQLRQMKRKV 231 CGWG G +IVI + F S VLPQYF H NFQSFVRQLNMYNF KTV EF H FR+GR + L +KRK Sbjct: 24 CGWGVNGDTIVIFKIAEFASEVLPQYFKHSNFQSFVRQLNMYNFHKTVQDPTH-GEFQHQYFRKGRPDLLHLIKRKA 99
BLAST of jgi.p|Trimin1|148356 vs. uniprot
Match: A0A4D9CUD5_9STRA (HSF_DOMAIN domain-containing protein n=1 Tax=Nannochloropsis salina CCMP1776 TaxID=1027361 RepID=A0A4D9CUD5_9STRA) HSP 1 Score: 90.1 bits (222), Expect = 2.520e-19 Identity = 48/78 (61.54%), Postives = 55/78 (70.51%), Query Frame = 1 Query: 1 CGWGAGGASIVIHDVHTFTSAVLPQYFNHGNFQSFVRQLNMYNFKKTVAPGLSLCEFSHPVFRRGRAEQLRQMKRKVS 234 CGWGAGG +IVI V F + VLP+YF H NFQSFVRQLNMY+F KTV S EF H FR+GR + L +KRKVS Sbjct: 100 CGWGAGGGTIVIKKVPEFAARVLPRYFKHSNFQSFVRQLNMYDFHKTVQDP-SHGEFRHEFFRQGRRDLLPLIKRKVS 176
BLAST of jgi.p|Trimin1|148356 vs. uniprot
Match: A0A3F2S375_9STRA (HSF_DOMAIN domain-containing protein n=1 Tax=Phytophthora kernoviae TaxID=325452 RepID=A0A3F2S375_9STRA) HSP 1 Score: 88.6 bits (218), Expect = 7.820e-19 Identity = 43/78 (55.13%), Postives = 53/78 (67.95%), Query Frame = 1 Query: 1 CGWGAGGASIVIHDVHTFTSAVLPQYFNHGNFQSFVRQLNMYNFKKTVAPGLSLCEFSHPVFRRGRAEQLRQMKRKVS 234 CGW A G +I++ + TF S VLP++F H NF SFVRQLN+Y F KTV L EF HP F+RGR + L +KRKVS Sbjct: 47 CGWNANGDTIIVSQLETFVSMVLPRFFKHRNFPSFVRQLNLYGFHKTVLDSKRL-EFQHPYFKRGRPDLLHHIKRKVS 123
BLAST of jgi.p|Trimin1|148356 vs. uniprot
Match: A0A3R7JRK0_9STRA (Uncharacterized protein n=3 Tax=Phytophthora kernoviae TaxID=325452 RepID=A0A3R7JRK0_9STRA) HSP 1 Score: 88.6 bits (218), Expect = 9.120e-19 Identity = 43/78 (55.13%), Postives = 53/78 (67.95%), Query Frame = 1 Query: 1 CGWGAGGASIVIHDVHTFTSAVLPQYFNHGNFQSFVRQLNMYNFKKTVAPGLSLCEFSHPVFRRGRAEQLRQMKRKVS 234 CGW A G +I++ + TF S VLP++F H NF SFVRQLN+Y F KTV L EF HP F+RGR + L +KRKVS Sbjct: 47 CGWNANGDTIIVSQLETFVSMVLPRFFKHRNFPSFVRQLNLYGFHKTVLDSKRL-EFQHPYFKRGRPDLLHHIKRKVS 123
BLAST of jgi.p|Trimin1|148356 vs. uniprot
Match: A0A7S0MGE9_9CRYP (Hypothetical protein (Fragment) n=1 Tax=Cryptomonas curvata TaxID=233186 RepID=A0A7S0MGE9_9CRYP) HSP 1 Score: 84.7 bits (208), Expect = 1.310e-18 Identity = 42/76 (55.26%), Postives = 53/76 (69.74%), Query Frame = 1 Query: 7 WGAGGASIVIHDVHTFTSAVLPQYFNHGNFQSFVRQLNMYNFKKTVAPGLSLCEFSHPVFRRGRAEQLRQMKRKVS 234 W A G SI+I D F+S +LP+YF H NF SFVRQLN+Y F KT S CEFSHPVFRRG + ++++RKV+ Sbjct: 53 WSATGESILIIDPPRFSSQILPRYFKHSNFASFVRQLNLYGFHKTSQESDS-CEFSHPVFRRGNEQTFKEIRRKVA 127
BLAST of jgi.p|Trimin1|148356 vs. uniprot
Match: A0A0P1AL35_PLAHL (HSF_DOMAIN domain-containing protein n=1 Tax=Plasmopara halstedii TaxID=4781 RepID=A0A0P1AL35_PLAHL) HSP 1 Score: 87.8 bits (216), Expect = 1.540e-18 Identity = 42/78 (53.85%), Postives = 53/78 (67.95%), Query Frame = 1 Query: 1 CGWGAGGASIVIHDVHTFTSAVLPQYFNHGNFQSFVRQLNMYNFKKTVAPGLSLCEFSHPVFRRGRAEQLRQMKRKVS 234 CGW G +I++ + TF + VLP++F H NF SFVRQLN+Y F KTV L EF HP F+RGR + L Q+KRKVS Sbjct: 46 CGWNVNGDTIIVSQLETFVAMVLPRFFKHRNFPSFVRQLNLYGFHKTVLDSKRL-EFQHPYFKRGRPDLLHQIKRKVS 122
BLAST of jgi.p|Trimin1|148356 vs. uniprot
Match: A0A484EF42_BRELC (HSF_DOMAIN domain-containing protein n=1 Tax=Bremia lactucae TaxID=4779 RepID=A0A484EF42_BRELC) HSP 1 Score: 87.8 bits (216), Expect = 1.650e-18 Identity = 42/78 (53.85%), Postives = 53/78 (67.95%), Query Frame = 1 Query: 1 CGWGAGGASIVIHDVHTFTSAVLPQYFNHGNFQSFVRQLNMYNFKKTVAPGLSLCEFSHPVFRRGRAEQLRQMKRKVS 234 CGW A G +I++ + TF + VLP++F H NF SFVRQLN+Y F KTV L EF HP F+RGR + L +KRKVS Sbjct: 62 CGWNANGDTIIVSQLETFVATVLPRFFKHRNFPSFVRQLNLYGFHKTVLDSKRL-EFQHPYFKRGRPDLLHHIKRKVS 138 The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|148356 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
This mRNA is a part of the following gene feature(s):
The following exon feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
spliced messenger RNA >mRNA_2929 ID=mRNA_2929|Name=jgi.p|Trimin1|148356|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=234bp|location=Sequence derived from alignment at Contig_16:136476..136709+ (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon. TGCGGCTGGGGCGCCGGCGGCGCTTCCATCGTCATCCACGACGTGCACACback to top protein sequence of jgi.p|Trimin1|148356 >Trimin1|148356|gw1.16.184.1 ID=Trimin1|148356|gw1.16.184.1|Name=jgi.p|Trimin1|148356|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=78bp CGWGAGGASIVIHDVHTFTSAVLPQYFNHGNFQSFVRQLNMYNFKKTVAPback to top mRNA from alignment at Contig_16:136476..136709+ Legend: exonpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_2929 ID=mRNA_2929|Name=jgi.p|Trimin1|148356|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=234bp|location=Sequence derived from alignment at Contig_16:136476..136709+ (Tribonema minus UTEX_B_3156 )back to top Coding sequence (CDS) from alignment at Contig_16:136476..136709+ >mRNA_2929 ID=mRNA_2929|Name=jgi.p|Trimin1|148356|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=234bp|location=Sequence derived from alignment at Contig_16:136476..136709+ (Tribonema minus UTEX_B_3156 )back to top |