mRNA_2924 (mRNA) Tribonema minus UTEX_B_3156
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Overview
Homology
BLAST of jgi.p|Trimin1|347782 vs. uniprot
Match: A0A836CJ30_9STRA (Heat shock protein 40 like protein/ DnaJ domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CJ30_9STRA) HSP 1 Score: 330 bits (846), Expect = 4.960e-111 Identity = 261/261 (100.00%), Postives = 261/261 (100.00%), Query Frame = 3
Query: 33 MAAAAPVPSGMAQQTDPVEATLRAPDSFAVLQLPLQKHEAEAVRSQYRRLARLVHPDKNAHPKAEAAFHRLAKAFDDLHDPESQAGILTTLRSGTPQQRSPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXARARQLREELEASLLSDETRLDARSQSWRSFAAAPAAKKVXXXXXXXXXXXXXXXXXXXXXXXSEGAQYACFLCRRGFKTAELLATHKALSQLHLINEQILGMRLGAATN 815
MAAAAPVPSGMAQQTDPVEATLRAPDSFAVLQLPLQKHEAEAVRSQYRRLARLVHPDKNAHPKAEAAFHRLAKAFDDLHDPESQAGILTTLRSGTPQQRSPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXARARQLREELEASLLSDETRLDARSQSWRSFAAAPAAKKVXXXXXXXXXXXXXXXXXXXXXXXSEGAQYACFLCRRGFKTAELLATHKALSQLHLINEQILGMRLGAATN
Sbjct: 1 MAAAAPVPSGMAQQTDPVEATLRAPDSFAVLQLPLQKHEAEAVRSQYRRLARLVHPDKNAHPKAEAAFHRLAKAFDDLHDPESQAGILTTLRSGTPQQRSPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXARARQLREELEASLLSDETRLDARSQSWRSFAAAPAAKKVXXXXXXXXXXXXXXXXXXXXXXXSEGAQYACFLCRRGFKTAELLATHKALSQLHLINEQILGMRLGAATN 261
BLAST of jgi.p|Trimin1|347782 vs. uniprot
Match: A0A1V9Z4M8_9STRA (Uncharacterized protein n=1 Tax=Achlya hypogyna TaxID=1202772 RepID=A0A1V9Z4M8_9STRA) HSP 1 Score: 61.6 bits (148), Expect = 1.560e-7 Identity = 34/74 (45.95%), Postives = 48/74 (64.86%), Query Frame = 3
Query: 114 FAVLQLP-LQKHEAEAVRSQYRRLARLVHPDKNAHPKAEAAFHRLAKAFDDLHDPESQAGILTTLRSGTPQQRS 332
FAVL L ++ E +R QY++LARLVHPDKN H +AE AF +L+ A+D L D SQA + T+ ++R+
Sbjct: 7 FAVLGLERIEFTELSVIRRQYKQLARLVHPDKNNHAQAEDAFKKLSLAYDCLSDDASQAQYIATITGNKKRRRN 80
BLAST of jgi.p|Trimin1|347782 vs. uniprot
Match: A0A3M6TFE1_POCDA (J domain-containing protein n=2 Tax=Pocillopora damicornis TaxID=46731 RepID=A0A3M6TFE1_POCDA) HSP 1 Score: 62.4 bits (150), Expect = 3.020e-7 Identity = 31/60 (51.67%), Postives = 42/60 (70.00%), Query Frame = 3
Query: 108 DSFAVLQLPLQKHEAEAVRSQYRRLARLVHPDKNAHPKAEAAFHRLAKAFDDLHDPESQA 287
D ++VL +P + + +R QYR+LA L+HPDKN HP+A+ AF LA AFD L DPE +A
Sbjct: 714 DPYSVLGVPRDATDDD-IRKQYRKLAVLIHPDKNTHPQADEAFKTLANAFDILSDPEKRA 772
BLAST of jgi.p|Trimin1|347782 vs. uniprot
Match: A0A5A7QSB0_STRAF (Chaperone DnaJ-domain superfamily protein n=1 Tax=Striga asiatica TaxID=4170 RepID=A0A5A7QSB0_STRAF) HSP 1 Score: 61.2 bits (147), Expect = 4.360e-7 Identity = 29/61 (47.54%), Postives = 44/61 (72.13%), Query Frame = 3
Query: 105 PDSFAVLQLPLQKHEAEAVRSQYRRLARLVHPDKNAHPKAEAAFHRLAKAFDDLHDPESQA 287
PD +AVLQ+P + EAE ++ QYRRLA L+HPDKN P +++AF +A+++ L DP ++
Sbjct: 67 PDWYAVLQIPQRTDEAELIKKQYRRLALLLHPDKNKFPFSDSAFRLVAESWAVLSDPAKKS 127
BLAST of jgi.p|Trimin1|347782 vs. uniprot
Match: A0A5A7Q5B3_STRAF (Dnajc14 protein n=1 Tax=Striga asiatica TaxID=4170 RepID=A0A5A7Q5B3_STRAF) HSP 1 Score: 61.2 bits (147), Expect = 4.460e-7 Identity = 29/61 (47.54%), Postives = 43/61 (70.49%), Query Frame = 3
Query: 105 PDSFAVLQLPLQKHEAEAVRSQYRRLARLVHPDKNAHPKAEAAFHRLAKAFDDLHDPESQA 287
PD +AVLQ+P + EA+ ++ QYRRLA L+HPDKN P +++AF +A ++ L DP +A
Sbjct: 67 PDWYAVLQIPQRTEEADVIKKQYRRLALLLHPDKNKFPFSDSAFRLVADSWAVLSDPTKKA 127
BLAST of jgi.p|Trimin1|347782 vs. uniprot
Match: D7G703_ECTSI (Heat shock protein 40 like protein/ DnaJ domain containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G703_ECTSI) HSP 1 Score: 59.7 bits (143), Expect = 1.280e-6 Identity = 27/40 (67.50%), Postives = 31/40 (77.50%), Query Frame = 3
Query: 168 QYRRLARLVHPDKNAHPKAEAAFHRLAKAFDDLHDPESQA 287
QYRRLA ++HPDKN HP AEAAF +L AF+ LHDP QA
Sbjct: 8 QYRRLALILHPDKNRHPDAEAAFKKLTAAFEKLHDPAQQA 47
BLAST of jgi.p|Trimin1|347782 vs. uniprot
Match: A0A2G9H1D0_9LAMI (J domain-containing protein n=2 Tax=Handroanthus impetiginosus TaxID=429701 RepID=A0A2G9H1D0_9LAMI) HSP 1 Score: 59.3 bits (142), Expect = 1.760e-6 Identity = 28/61 (45.90%), Postives = 43/61 (70.49%), Query Frame = 3
Query: 105 PDSFAVLQLPLQKHEAEAVRSQYRRLARLVHPDKNAHPKAEAAFHRLAKAFDDLHDPESQA 287
PD +++LQ+P + EAE ++ QYRRLA L+HPDKN P A++AF +A ++ L DP ++
Sbjct: 71 PDWYSILQIPQRTDEAELIKKQYRRLALLLHPDKNKFPFADSAFGLVADSWAVLSDPAKKS 131
BLAST of jgi.p|Trimin1|347782 vs. uniprot
Match: A0A2B4SSW4_STYPI (DnaJ-like subfamily C member 14 n=2 Tax=Stylophora pistillata TaxID=50429 RepID=A0A2B4SSW4_STYPI) HSP 1 Score: 59.7 bits (143), Expect = 2.240e-6 Identity = 31/57 (54.39%), Postives = 40/57 (70.18%), Query Frame = 3
Query: 117 AVLQLPLQKHEAEAVRSQYRRLARLVHPDKNAHPKAEAAFHRLAKAFDDLHDPESQA 287
+VL +P E + +R QYR+LA L+HPDKN HP+A+ AF LA AFD L DPE +A
Sbjct: 575 SVLCVPSDATEDD-IRKQYRKLAVLIHPDKNTHPQADEAFKTLANAFDILSDPEKRA 630
BLAST of jgi.p|Trimin1|347782 vs. uniprot
Match: A0A6I9SUR9_SESIN (uncharacterized protein LOC105159039 n=1 Tax=Sesamum indicum TaxID=4182 RepID=A0A6I9SUR9_SESIN) HSP 1 Score: 58.5 bits (140), Expect = 3.440e-6 Identity = 28/57 (49.12%), Postives = 41/57 (71.93%), Query Frame = 3
Query: 105 PDSFAVLQLPLQKHEAEAVRSQYRRLARLVHPDKNAHPKAEAAFHRLAKAFDDLHDP 275
PD ++VLQ+P + EAE ++ QYRRLA L+HPDKN P +++AF +A ++ L DP
Sbjct: 71 PDWYSVLQVPQRTDEAELIKKQYRRLALLLHPDKNKFPFSDSAFRLVADSWAVLSDP 127
BLAST of jgi.p|Trimin1|347782 vs. uniprot
Match: S8DWE3_9LAMI (J domain-containing protein n=1 Tax=Genlisea aurea TaxID=192259 RepID=S8DWE3_9LAMI) HSP 1 Score: 58.2 bits (139), Expect = 4.430e-6 Identity = 28/57 (49.12%), Postives = 41/57 (71.93%), Query Frame = 3
Query: 105 PDSFAVLQLPLQKHEAEAVRSQYRRLARLVHPDKNAHPKAEAAFHRLAKAFDDLHDP 275
PD +A+LQ+P + EAE ++ QYRRLA L+HPDKN P +++AF +A ++ L DP
Sbjct: 71 PDWYAILQVPHRTDEAELIKKQYRRLALLLHPDKNKLPFSDSAFRLVADSWAVLSDP 127 The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|347782 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following exon feature(s) are a part of this mRNA:
The following three_prime_UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following five_prime_UTR feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
spliced messenger RNA >mRNA_2924 ID=mRNA_2924|Name=jgi.p|Trimin1|347782|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=851bp|location=Sequence derived from alignment at Contig_16:99508..101654- (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon. ACGCAACCCTTACCTGATGAGGCGCTCGAGCGATGGCTGCAGCAGCGCCCback to top protein sequence of jgi.p|Trimin1|347782 >Trimin1|347782|estExt_Genemark1.C_Ctg_160014 ID=Trimin1|347782|estExt_Genemark1.C_Ctg_160014|Name=jgi.p|Trimin1|347782|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=262bp MAAAAPVPSGMAQQTDPVEATLRAPDSFAVLQLPLQKHEAEAVRSQYRRLback to top mRNA from alignment at Contig_16:99508..101654- Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_2924 ID=mRNA_2924|Name=jgi.p|Trimin1|347782|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=2147bp|location=Sequence derived from alignment at Contig_16:99508..101654- (Tribonema minus UTEX_B_3156 )back to top Coding sequence (CDS) from alignment at Contig_16:99508..101654- >mRNA_2924 ID=mRNA_2924|Name=jgi.p|Trimin1|347782|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=786bp|location=Sequence derived from alignment at Contig_16:99508..101654- (Tribonema minus UTEX_B_3156 )back to top |