mRNA_2897 (mRNA) Tribonema minus UTEX_B_3156

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
Namejgi.p|Trimin1|140759
Unique NamemRNA_2897
TypemRNA
OrganismTribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Homology
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BLAST of jgi.p|Trimin1|140759 vs. uniprot
Match: A0A835YKZ6_9STRA (CRC domain-containing protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YKZ6_9STRA)

HSP 1 Score: 139 bits (350), Expect = 5.390e-42
Identity = 66/66 (100.00%), Postives = 66/66 (100.00%), Query Frame = 1 
Query:    1 EQVAVDGCKCKKSKCLKMYCQCFAAQKMCSCFCSCRGCHNTAAFAEERAQVMESLLMRKPHAFDAK 198
            EQVAVDGCKCKKSKCLKMYCQCFAAQKMCSCFCSCRGCHNTAAFAEERAQVMESLLMRKPHAFDAK
Sbjct:    1 EQVAVDGCKCKKSKCLKMYCQCFAAQKMCSCFCSCRGCHNTAAFAEERAQVMESLLMRKPHAFDAK 66
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BLAST of jgi.p|Trimin1|140759 vs. uniprot
Match: D8LP28_ECTSI (TSO1 transcription factor (Partial) (Fragment) n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LP28_ECTSI)

HSP 1 Score: 72.8 bits (177), Expect = 1.980e-13
Identity = 34/66 (51.52%), Postives = 42/66 (63.64%), Query Frame = 1 
Query:    1 EQVAVDGCKCKKSKCLKMYCQCFAAQKMCSCFCSCRGCHNTAAFAEERAQVMESLLMRKPHAFDAK 198
            E    DGC CK+SKCLK+YCQCFA Q +C+  C+C  C+N A     R Q +  +L R P AFDAK
Sbjct:   19 EAPTTDGCNCKRSKCLKLYCQCFAMQVVCTASCNCHHCYNNANQESMRLQAINGVLERNPAAFDAK 84
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BLAST of jgi.p|Trimin1|140759 vs. uniprot
Match: A0A2V3IYW8_9FLOR (Protein tesmin/TSO1-like CXC 6 n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3IYW8_9FLOR)

HSP 1 Score: 72.0 bits (175), Expect = 3.590e-13
Identity = 33/66 (50.00%), Postives = 41/66 (62.12%), Query Frame = 1 
Query:    1 EQVAVDGCKCKKSKCLKMYCQCFAAQKMCSCFCSCRGCHNTAAFAEERAQVMESLLMRKPHAFDAK 198
            EQ    GC CK SKCLK+YC+CFA  + C   C+CR C N   F EE+   +ES+L R P+AF  K
Sbjct:  117 EQRLEKGCNCKNSKCLKLYCECFAKGRTCGPHCNCRNCRNNGQFPEEKQAAVESILERNPNAFQPK 182
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BLAST of jgi.p|Trimin1|140759 vs. uniprot
Match: A0A078A518_STYLE (CRC domain-containing protein n=1 Tax=Stylonychia lemnae TaxID=5949 RepID=A0A078A518_STYLE)

HSP 1 Score: 72.0 bits (175), Expect = 3.680e-13
Identity = 34/60 (56.67%), Postives = 38/60 (63.33%), Query Frame = 1 
Query:   19 GCKCKKSKCLKMYCQCFAAQKMCSCFCSCRGCHNTAAFAEERAQVMESLLMRKPHAFDAK 198
             C CK+SKCLK+YC+CFA  K C   CSC GC N A   EER Q  E +LMR P AF  K
Sbjct:  370 ACNCKRSKCLKLYCECFANNKFCGANCSCNGCSNHAEHDEERLQAKEQILMRNPLAFRPK 429
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BLAST of jgi.p|Trimin1|140759 vs. uniprot
Match: A0A6H5JPL0_9PHAE (CRC domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JPL0_9PHAE)

HSP 1 Score: 72.0 bits (175), Expect = 3.720e-13
Identity = 33/66 (50.00%), Postives = 42/66 (63.64%), Query Frame = 1 
Query:    1 EQVAVDGCKCKKSKCLKMYCQCFAAQKMCSCFCSCRGCHNTAAFAEERAQVMESLLMRKPHAFDAK 198
            E    DGC CK+SKCLK+YCQCFA Q +C+  C+C  C+N +     R Q +  +L R P AFDAK
Sbjct:  373 ESPTTDGCNCKRSKCLKLYCQCFAMQVVCTASCNCHHCYNNSNQESMRLQAINGVLERNPAAFDAK 438
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BLAST of jgi.p|Trimin1|140759 vs. uniprot
Match: A0A7S2Y884_9STRA (Hypothetical protein (Fragment) n=1 Tax=Amphiprora paludosa TaxID=265537 RepID=A0A7S2Y884_9STRA)

HSP 1 Score: 67.8 bits (164), Expect = 4.410e-13
Identity = 31/66 (46.97%), Postives = 41/66 (62.12%), Query Frame = 1 
Query:    1 EQVAVDGCKCKKSKCLKMYCQCFAAQKMCSCFCSCRGCHNTAAFAEERAQVMESLLMRKPHAFDAK 198
            ++V   GC CKK++CLK+YCQCFA Q  C   C C  CHN  +  + R + +  +L R PHAFD K
Sbjct:   43 QEVLHMGCTCKKTRCLKLYCQCFALQLYCGPNCRCMTCHNVVSQEKARQEAIRLILGRNPHAFDTK 108
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BLAST of jgi.p|Trimin1|140759 vs. uniprot
Match: A0A7S1UZB4_9STRA (Hypothetical protein (Fragment) n=1 Tax=Grammatophora oceanica TaxID=210454 RepID=A0A7S1UZB4_9STRA)

HSP 1 Score: 71.2 bits (173), Expect = 5.090e-13
Identity = 33/58 (56.90%), Postives = 38/58 (65.52%), Query Frame = 1 
Query:   19 GCKCKKSKCLKMYCQCFAAQKMCSCFCSCRGCHNTAAFAEERAQVMESLLMRKPHAFD 192
            GC CKKSKCLK+YCQCFA   MC   C C  CHNTA   + R + + S+L R P AFD
Sbjct:  279 GCTCKKSKCLKLYCQCFATSIMCGQNCRCLVCHNTALHEDARKEAVRSILQRNPTAFD 336
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BLAST of jgi.p|Trimin1|140759 vs. uniprot
Match: A0E6U2_PARTE (CRC domain-containing protein n=1 Tax=Paramecium tetraurelia TaxID=5888 RepID=A0E6U2_PARTE)

HSP 1 Score: 68.6 bits (166), Expect = 1.670e-12
Identity = 32/59 (54.24%), Postives = 41/59 (69.49%), Query Frame = 1 
Query:   22 CKCKKSKCLKMYCQCFAAQKMCSCFCSCRGCHNTAAFAEERAQVMESLLMRKPHAFDAK 198
            C CKKSKCLK+YC CFAA K+CS  C+C GC N ++   ER Q +E ++ R P AF+ K
Sbjct:   85 CNCKKSKCLKLYCDCFAAGKLCSSKCNCCGCFNNSSNLLERNQFIEKMVERNPEAFNQK 143
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BLAST of jgi.p|Trimin1|140759 vs. uniprot
Match: J9I7X2_9SPIT (Tso1, putative n=1 Tax=Oxytricha trifallax TaxID=1172189 RepID=J9I7X2_9SPIT)

HSP 1 Score: 70.1 bits (170), Expect = 1.760e-12
Identity = 32/63 (50.79%), Postives = 39/63 (61.90%), Query Frame = 1 
Query:   10 AVDGCKCKKSKCLKMYCQCFAAQKMCSCFCSCRGCHNTAAFAEERAQVMESLLMRKPHAFDAK 198
            ++  C CKKSKCLK+YC+CFA  K C   C+C GC N A   +ER    E +LMR P AF  K
Sbjct:  447 SIKSCNCKKSKCLKLYCECFANNKFCGANCACNGCSNHAEHDDERLHAKEQILMRNPLAFRPK 509
[Close]
BLAST of jgi.p|Trimin1|140759 vs. uniprot
Match: A0A7S0C865_9STRA (Hypothetical protein (Fragment) n=1 Tax=Proboscia inermis TaxID=420281 RepID=A0A7S0C865_9STRA)

HSP 1 Score: 65.9 bits (159), Expect = 1.980e-12
Identity = 33/60 (55.00%), Postives = 38/60 (63.33%), Query Frame = 1 
Query:   19 GCKCKKSKCLKMYCQCFAAQKMCSCFCSCRGCHNTAAFAEERAQVMESLLMRKPHAFDAK 198
            GC CKKSKCLK+YCQCFAA  MCS  C C  C NT      R   ++S+L R P AF+ K
Sbjct:   22 GCTCKKSKCLKLYCQCFAASVMCSGNCRCLVCMNTPEHEMARRDAIKSILGRNPAAFETK 81
The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|140759 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A835YKZ6_9STRA5.390e-42100.00CRC domain-containing protein (Fragment) n=1 Tax=T... [more]
D8LP28_ECTSI1.980e-1351.52TSO1 transcription factor (Partial) (Fragment) n=1... [more]
A0A2V3IYW8_9FLOR3.590e-1350.00Protein tesmin/TSO1-like CXC 6 n=1 Tax=Gracilariop... [more]
A0A078A518_STYLE3.680e-1356.67CRC domain-containing protein n=1 Tax=Stylonychia ... [more]
A0A6H5JPL0_9PHAE3.720e-1350.00CRC domain-containing protein n=1 Tax=Ectocarpus s... [more]
A0A7S2Y884_9STRA4.410e-1346.97Hypothetical protein (Fragment) n=1 Tax=Amphiprora... [more]
A0A7S1UZB4_9STRA5.090e-1356.90Hypothetical protein (Fragment) n=1 Tax=Grammatoph... [more]
A0E6U2_PARTE1.670e-1254.24CRC domain-containing protein n=1 Tax=Paramecium t... [more]
J9I7X2_9SPIT1.760e-1250.79Tso1, putative n=1 Tax=Oxytricha trifallax TaxID=1... [more]
A0A7S0C865_9STRA1.980e-1255.00Hypothetical protein (Fragment) n=1 Tax=Proboscia ... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Contig_8contigContig_8:1746954..1747970 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Tribonema minus UTEX_B_31562021-06-17
Properties
Property NameValue
ProteomeIdTrimin1|140759|gw1.8.156.1
BRITEko00000,ko00001
KEGG Pathwayko04218,map04218
KEGG koko:K21776
GOsGO:0000003,GO:0000228,GO:0000280,GO:0000785,GO:0000790,GO:0003674,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005694,GO:0006355,GO:0006996,GO:0007049,GO:0007140,GO:0007276,GO:0008150,GO:0009889,GO:0009891,GO:0009893,GO:0009987,GO:0010468,GO:0010556,GO:0010557,GO:0010604,GO:0010628,GO:0016043,GO:0019219,GO:0019222,GO:0019953,GO:0022402,GO:0022412,GO:0022414,GO:0031323,GO:0031325,GO:0031326,GO:0031328,GO:0031974,GO:0031981,GO:0032501,GO:0032504,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0044422,GO:0044424,GO:0044427,GO:0044428,GO:0044446,GO:0044454,GO:0044464,GO:0044703,GO:0045893,GO:0045935,GO:0048232,GO:0048285,GO:0048518,GO:0048522,GO:0048609,GO:0050789,GO:0050794,GO:0051037,GO:0051039,GO:0051171,GO:0051173,GO:0051252,GO:0051254,GO:0051321,GO:0051704,GO:0060255,GO:0065007,GO:0070013,GO:0071840,GO:0080090,GO:0140013,GO:1902680,GO:1903046,GO:1903506,GO:1903508,GO:2000112,GO:2001141
DescriptionDNA-binding transcription factor activity
COG categoryS
Max annot lvl2759|Eukaryota
EggNOG OGsKOG1171@1|root,KOG1171@2759|Eukaryota
Evalue3.25e-14
Seed ortholog2880.D8LP28
Hectar predicted targeting categoryother localisation
TranscriptId141081
TrackFilteredModels1
ProteinId140759
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|140759gene_2897Tribonema minus UTEX_B_3156 geneContig_8 1746954..1747970 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
exon_2897_1exon_2897_1Tribonema minus UTEX_B_3156 exonContig_8 1746954..1747006 +
exon_2897_2exon_2897_2Tribonema minus UTEX_B_3156 exonContig_8 1747826..1747970 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
CDS_2897CDS_2897Tribonema minus UTEX_B_3156 CDSContig_8 1746954..1747006 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|140759Trimin1|140759|gw1.8.156.1Tribonema minus UTEX_B_3156 polypeptideContig_8 1746954..1747970 +


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>mRNA_2897 ID=mRNA_2897|Name=jgi.p|Trimin1|140759|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=198bp|location=Sequence derived from alignment at Contig_8:1746954..1747970+ (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon.  
GAGCAGGTCGCCGTGGACGGCTGCAAGTGCAAGAAGTCCAAGTGCCTGAA
GATGTACTGCCAGTGCTTCGCAGCGCAGAAGATGTGCAGCTGCTTCTGCT
CGTGCCGCGGGTGCCACAACACGGCGGCGTTCGCGGAGGAGCGCGCGCAA
GTCATGGAGTCGCTGCTGATGCGGAAGCCGCACGCGTTCGACGCAAAG
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protein sequence of jgi.p|Trimin1|140759

>Trimin1|140759|gw1.8.156.1 ID=Trimin1|140759|gw1.8.156.1|Name=jgi.p|Trimin1|140759|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=66bp
EQVAVDGCKCKKSKCLKMYCQCFAAQKMCSCFCSCRGCHNTAAFAEERAQ
VMESLLMRKPHAFDAK
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mRNA from alignment at Contig_8:1746954..1747970+

Legend: exonpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_2897 ID=mRNA_2897|Name=jgi.p|Trimin1|140759|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=1017bp|location=Sequence derived from alignment at Contig_8:1746954..1747970+ (Tribonema minus UTEX_B_3156 )
GAGCAGGTCGCCGTGGACGGCTGCAAGTGCAAGAAGTCCAAGTGCCTGAA
GATGTGAGTGCGCCGTGTTGAATTGTCATAGAATTTTGAAGTTGAAGTTG
CCGCAGGGTCATTGTGTGAAGGTAGTCAGGTGATTGCCCTGCCTTGGCGA
GAGTCGGCGGTGCGCGCGAGGGCCGGCGGTTCTTTCTGTCTGACGATGAG
CAGGCCTGCGCTGGCGCAGCAGCAGGCATTGTGCCATGCATTGCACAGGC
GATGGGTCCAGCGCAAGTGCATCTGACGAGCGCAGGCGGGCAAGTGCAAC
CAATTTGGCTTAACGCGACTATTTGCTTATTACGCAGATCTGATGGTGCG
TGTGAGATGCAATCCATGCATGTCAGCACTGTGATGCGCTGCTCTGGTAG
CGGTTGTTGATTTGACCCAACAGCAAGGCTGCAGTTCTGGCCGGTTGACT
TGCATCAGCACATGCGCTGTACCGCAACGGTGGCAGAGGTGTTCGTTAGT
GGGGGTGCGCAAACAGGTAGTCCGCCACGCTTTGCAGAAGCTGCAGCAGT
TGGCGGCGGCGATGATGGGAGAGCAGCGTCGTATGAGCATAACAGCAGCA
GAACGGGGGCCTGCGGCACGTTCACAAATGCAAAAGAGATTGCATCAGAA
CAGCACCGCTTCGCTCTGCAACGCAGCATGTGCAGATGTGGACCTGATGC
AGCAATTCATTCAGTGCCACGCGCATGTGCACCAGCGAAGCGCCCGCCCC
CCCGCGTGCCATGCGCAGGACAGCTGACACCCGTATGCGGAACGCGCACT
CACCCGCACTCCGAGTTCCATGTTGAAGTTGGGTGTTGAAGTTGACACGC
CCGCTGTGCGTCGTCTGCGCAGGTACTGCCAGTGCTTCGCAGCGCAGAAG
ATGTGCAGCTGCTTCTGCTCGTGCCGCGGGTGCCACAACACGGCGGCGTT
CGCGGAGGAGCGCGCGCAAGTCATGGAGTCGCTGCTGATGCGGAAGCCGC
ACGCGTTCGACGCAAAG
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Coding sequence (CDS) from alignment at Contig_8:1746954..1747970+

>mRNA_2897 ID=mRNA_2897|Name=jgi.p|Trimin1|140759|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=198bp|location=Sequence derived from alignment at Contig_8:1746954..1747970+ (Tribonema minus UTEX_B_3156 )
GAGCAGGTCGCCGTGGACGGCTGCAAGTGCAAGAAGTCCAAGTGCCTGAA
GATGTACTGCCAGTGCTTCGCAGCGCAGAAGATGTGCAGCTGCTTCTGCT
CGTGCCGCGGGTGCCACAACACGGCGGCGTTCGCGGAGGAGCGCGCGCAA
GTCATGGAGTCGCTGCTGATGCGGAAGCCGCACGCGTTCGACGCAAAG
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