mRNA_2835 (mRNA) Tribonema minus UTEX_B_3156

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	jgi.p\|Trimin1\|159249
Unique Name	mRNA_2835
Type	mRNA
Organism	Tribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )

Homology

[Close]

BLAST of jgi.p|Trimin1|159249 vs. uniprot
Match: A0A835YKW0_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YKW0_9STRA)

HSP 1 Score: 686 bits (1771), Expect = 9.050e-246
Identity = 456/456 (100.00%), Postives = 456/456 (100.00%), Query Frame = 1

Query:    1 MTTRPLPDREEHWRFYTSSALLCSGLSVSLLDWAVHNDLRLRDRHDDFEERRRSYYRPPPVRVAFRAAAAAGDVKLVQRLLDGGLVQYQLADALDKAARSGHLEVVRVLRRHDVQGSWGSEETGSAAQEGRLEDLQRLYDTGHSVCESAVDAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXYLHSVGALCAQRGEQDAXXXXXXXXXXXXXXXXXXDGCGQPLTMAVHEAATRSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXMLGGWRVWLLDKTQCPLQAGYAREAVAHGHMPVLRTLCDRGCTLDAAVFEAAAGSGSLDALQLLREQKCPWESDAKTCLAAIREGXXXXXXXXXXXXXPLQWPKLRDGHVAVECARRGDVNMLKWVVSNGCIWNEQYRQSCTVVAEKQQHTEVVEWLCSSESQKTKKAKHKQRKQGAPSVA 1368
            MTTRPLPDREEHWRFYTSSALLCSGLSVSLLDWAVHNDLRLRDRHDDFEERRRSYYRPPPVRVAFRAAAAAGDVKLVQRLLDGGLVQYQLADALDKAARSGHLEVVRVLRRHDVQGSWGSEETGSAAQEGRLEDLQRLYDTGHSVCESAVDAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXYLHSVGALCAQRGEQDAXXXXXXXXXXXXXXXXXXDGCGQPLTMAVHEAATRSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXMLGGWRVWLLDKTQCPLQAGYAREAVAHGHMPVLRTLCDRGCTLDAAVFEAAAGSGSLDALQLLREQKCPWESDAKTCLAAIREGXXXXXXXXXXXXXPLQWPKLRDGHVAVECARRGDVNMLKWVVSNGCIWNEQYRQSCTVVAEKQQHTEVVEWLCSSESQKTKKAKHKQRKQGAPSVA
Sbjct:    1 MTTRPLPDREEHWRFYTSSALLCSGLSVSLLDWAVHNDLRLRDRHDDFEERRRSYYRPPPVRVAFRAAAAAGDVKLVQRLLDGGLVQYQLADALDKAARSGHLEVVRVLRRHDVQGSWGSEETGSAAQEGRLEDLQRLYDTGHSVCESAVDAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXYLHSVGALCAQRGEQDAXXXXXXXXXXXXXXXXXXDGCGQPLTMAVHEAATRSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXMLGGWRVWLLDKTQCPLQAGYAREAVAHGHMPVLRTLCDRGCTLDAAVFEAAAGSGSLDALQLLREQKCPWESDAKTCLAAIREGXXXXXXXXXXXXXPLQWPKLRDGHVAVECARRGDVNMLKWVVSNGCIWNEQYRQSCTVVAEKQQHTEVVEWLCSSESQKTKKAKHKQRKQGAPSVA 456

The following BLAST results are available for this feature:

BLAST of jgi.p|Trimin1|159249 vs. uniprot

BLAST of jgi.p|Trimin1|159249 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1


Match Name	E-value	Identity	Description
A0A835YKW0_9STRA	9.050e-246	100.00	Uncharacterized protein n=1 Tax=Tribonema minus Ta...	[more]

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
Contig_8	contig	Contig_8:1129283..1131027 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Diamond blastx: OGS1.0 vs UniRef90	2022-09-19
OGS1.0 of Tribonema minus UTEX_B_3156	2021-06-17

Properties


Property Name	Value
ProteomeId	Trimin1\|159249\|e_gw1.8.122.1
Hectar predicted targeting category	other localisation
TranscriptId	159571
Track	FilteredModels1
ProteinId	159249

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
jgi.p\|Trimin1\|159249	gene_2835	Tribonema minus UTEX_B_3156	gene	Contig_8 1129283..1131027 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
exon_2835_1	exon_2835_1	Tribonema minus UTEX_B_3156	exon	Contig_8 1129283..1129765 +
exon_2835_2	exon_2835_2	Tribonema minus UTEX_B_3156	exon	Contig_8 1130045..1130405 +
exon_2835_3	exon_2835_3	Tribonema minus UTEX_B_3156	exon	Contig_8 1130501..1131027 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
CDS_2835	CDS_2835	Tribonema minus UTEX_B_3156	CDS	Contig_8 1129283..1129765 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
jgi.p\|Trimin1\|159249	Trimin1\|159249\|e_gw1.8.122.1	Tribonema minus UTEX_B_3156	polypeptide	Contig_8 1129283..1131027 +

Sequences

The following sequences are available for this feature:

mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at Contig_8:1129283..1131027+
coding sequence from alignment at Contig_8:1129283..1131027+

spliced messenger RNA

>mRNA_2835 ID=mRNA_2835|Name=jgi.p|Trimin1|159249|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=1371bp|location=Sequence derived from alignment at Contig_8:1129283..1131027+ (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon.  
ATGACCACACGCCCTTTGCCGGACCGCGAAGAGCATTGGCGGTTTTACAC
GAGTTCAGCGCTGCTCTGCAGCGGGCTCAGCGTGAGCCTACTGGACTGGG
CTGTTCACAACGACCTGCGTCTTCGTGATCGGCACGACGACTTCGAGGAG
CGGCGTCGCTCCTACTATCGCCCGCCGCCCGTACGCGTGGCGTTCCGGGC
AGCGGCCGCAGCCGGCGACGTCAAGCTGGTGCAGCGGCTGTTGGACGGGG
GCCTGGTTCAGTACCAGCTTGCCGATGCGCTGGACAAAGCTGCCCGCAGC
GGCCACCTCGAAGTGGTGCGCGTGCTGCGGCGGCACGACGTGCAAGGGTC
GTGGGGTTCCGAGGAGACCGGGAGCGCAGCGCAGGAGGGACGATTGGAGG
ACCTGCAGCGCCTTTACGACACTGGCCACAGCGTATGTGAGTCAGCTGTG
GACGCAGCCGCGGCAGCCGGCCACATGGAGGTTTTGAAGCAACAGTATGA
GGCTGGCTACCCTGTTTTAAGCGCAACGCGCGCGTCAGCGGCCGAGCATG
GTCACCTGCACGTGCTACAGTACCTCCACTCAGTAGGCGCGCTGTGCGCG
CAGAGGGGGGAGCAGGATGCAACCATGTGTAGCGCAGCAAGCGGTGGCCA
TTTGCATGTGGTGCAATGGTTGCATGATGGATGCGGCCAGCCACTCACCA
TGGCGGTTCACGAGGCGGCTACGCGCAGCGGCAACCTTGACTTGCTCCAG
TGGCTGCACTCTCGCAGATGCCCCTTGAGTGCCGAAGCATGCTCCATAGC
AGCATGGGAGCATGGCAACTTTGATATGCTTGGAGGGTGGAGGGTCTGGT
TGTTGGACAAAACGCAGTGTCCCCTTCAAGCCGGGTATGCCCGCGAGGCT
GTTGCGCACGGGCACATGCCGGTACTGCGCACACTGTGCGACCGTGGCTG
CACCTTGGACGCCGCAGTGTTTGAAGCGGCAGCAGGGAGCGGCTCACTCG
ACGCACTGCAGCTTTTGAGAGAGCAAAAGTGCCCATGGGAATCCGATGCC
AAGACTTGCTTGGCGGCCATTAGGGAGGGACATGTTGCGGCCGTCCAGTG
GCTCAGAAATGCCCGGTGCCCATTGCAGTGGCCAAAGTTGCGCGATGGGC
ATGTAGCAGTTGAGTGTGCCAGGCGGGGGGACGTGAACATGCTCAAGTGG
GTCGTAAGCAACGGTTGCATTTGGAATGAGCAGTACCGGCAGAGCTGCAC
TGTGGTTGCAGAGAAGCAACAGCACACAGAGGTAGTCGAGTGGCTTTGCA
GCAGTGAAAGCCAGAAAACAAAGAAAGCCAAGCACAAGCAGAGGAAGCAA
GGCGCGCCATCTGTTGCTTAA

protein sequence of jgi.p|Trimin1|159249

>Trimin1|159249|e_gw1.8.122.1 ID=Trimin1|159249|e_gw1.8.122.1|Name=jgi.p|Trimin1|159249|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=457bp
MTTRPLPDREEHWRFYTSSALLCSGLSVSLLDWAVHNDLRLRDRHDDFEE
RRRSYYRPPPVRVAFRAAAAAGDVKLVQRLLDGGLVQYQLADALDKAARS
GHLEVVRVLRRHDVQGSWGSEETGSAAQEGRLEDLQRLYDTGHSVCESAV
DAAAAAGHMEVLKQQYEAGYPVLSATRASAAEHGHLHVLQYLHSVGALCA
QRGEQDATMCSAASGGHLHVVQWLHDGCGQPLTMAVHEAATRSGNLDLLQ
WLHSRRCPLSAEACSIAAWEHGNFDMLGGWRVWLLDKTQCPLQAGYAREA
VAHGHMPVLRTLCDRGCTLDAAVFEAAAGSGSLDALQLLREQKCPWESDA
KTCLAAIREGHVAAVQWLRNARCPLQWPKLRDGHVAVECARRGDVNMLKW
VVSNGCIWNEQYRQSCTVVAEKQQHTEVVEWLCSSESQKTKKAKHKQRKQ
GAPSVA*

mRNA from alignment at Contig_8:1129283..1131027+

Legend: exonpolypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_2835 ID=mRNA_2835|Name=jgi.p|Trimin1|159249|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=1745bp|location=Sequence derived from alignment at Contig_8:1129283..1131027+ (Tribonema minus UTEX_B_3156 )
ATGACCACACGCCCTTTGCCGGACCGCGAAGAGCATTGGCGGTTTTACAC
GAGTTCAGCGCTGCTCTGCAGCGGGCTCAGCGTGAGCCTACTGGACTGGG
CTGTTCACAACGACCTGCGTCTTCGTGATCGGCACGACGACTTCGAGGAG
CGGCGTCGCTCCTACTATCGCCCGCCGCCCGTACGCGTGGCGTTCCGGGC
AGCGGCCGCAGCCGGCGACGTCAAGCTGGTGCAGCGGCTGTTGGACGGGG
GCCTGGTTCAGTACCAGCTTGCCGATGCGCTGGACAAAGCTGCCCGCAGC
GGCCACCTCGAAGTGGTGCGCGTGCTGCGGCGGCACGACGTGCAAGGGTC
GTGGGGTTCCGAGGAGACCGGGAGCGCAGCGCAGGAGGGACGATTGGAGG
ACCTGCAGCGCCTTTACGACACTGGCCACAGCGTATGTGAGTCAGCTGTG
GACGCAGCCGCGGCAGCCGGCCACATGGAGGTTGTACGATGGCTGCGTGA
GCAGGGTTTGAGAGGGCGGCACAGTCTCAACCTTGCGCGTGAGGCAGTGC
GTAGGGGGGCGGTTATTGAGCTGCAGATGCTGTACGCTGCAGGATTTCCT
GTGGCTGTGGAGCCACATGTGGTAGATGATGCAGCACGCAGGAACTATCG
AGAAGAGATCCTCTGGCTGCGAGCACATGGTGTGATAGGCAGCAGCGACG
CTTATACAGCATTTGATTACTATTTTAGCACTAGATACGCTAGCACTGGC
AACTTAGACCAGTTGAAGCAACAGTATGAGGCTGGCTACCCTGTTTTAAG
CGCAACGCGCGCGTCAGCGGCCGAGCATGGTCACCTGCACGTGCTACAGT
ACCTCCACTCAGTAGGCGCGCTGTGCGCGCAGAGGGGGGAGCAGGATGCA
ACCATGTGTAGCGCAGCAAGCGGTGGCCATTTGCATGTGGTGCAATGGTT
GCATGATGGATGCGGCCAGCCACTCACCATGGCGGTTCACGAGGCGGCTA
CGCGCAGCGGCAACCTTGACTTGCTCCAGTGGCTGCACTCTCGCAGATGC
CCCTTGAGTGCCGAAGCATGCTCCATAGCAGCATGGGAGCATGGCAACTT
TGATATGCTTGGAGGGTGGAGGGGTTGCCATCAAAGCCCAGTAGGCCCGG
GGCTAGTACCGTCTGTCGTGGCGGCATCCTGCATGCGGCGGTGTCCAAAG
GCCTCCTGGACATGGTAGTCTGGTTGTTGGACAAAACGCAGTGTCCCCTT
CAAGCCGGGTATGCCCGCGAGGCTGTTGCGCACGGGCACATGCCGGTACT
GCGCACACTGTGCGACCGTGGCTGCACCTTGGACGCCGCAGTGTTTGAAG
CGGCAGCAGGGAGCGGCTCACTCGACGCACTGCAGCTTTTGAGAGAGCAA
AAGTGCCCATGGGAATCCGATGCCAAGACTTGCTTGGCGGCCATTAGGGA
GGGACATGTTGCGGCCGTCCAGTGGCTCAGAAATGCCCGGTGCCCATTGC
AGTGGCCAAAGTTGCGCGATGGGCATGTAGCAGTTGAGTGTGCCAGGCGG
GGGGACGTGAACATGCTCAAGTGGGTCGTAAGCAACGGTTGCATTTGGAA
TGAGCAGTACCGGCAGAGCTGCACTGTGGTTGCAGAGAAGCAACAGCACA
CAGAGGTAGTCGAGTGGCTTTGCAGCAGTGAAAGCCAGAAAACAAAGAAA
GCCAAGCACAAGCAGAGGAAGCAAGGCGCGCCATCTGTTGCTTAA

Coding sequence (CDS) from alignment at Contig_8:1129283..1131027+

>mRNA_2835 ID=mRNA_2835|Name=jgi.p|Trimin1|159249|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=1371bp|location=Sequence derived from alignment at Contig_8:1129283..1131027+ (Tribonema minus UTEX_B_3156 )
ATGACCACACGCCCTTTGCCGGACCGCGAAGAGCATTGGCGGTTTTACAC
GAGTTCAGCGCTGCTCTGCAGCGGGCTCAGCGTGAGCCTACTGGACTGGG
CTGTTCACAACGACCTGCGTCTTCGTGATCGGCACGACGACTTCGAGGAG
CGGCGTCGCTCCTACTATCGCCCGCCGCCCGTACGCGTGGCGTTCCGGGC
AGCGGCCGCAGCCGGCGACGTCAAGCTGGTGCAGCGGCTGTTGGACGGGG
GCCTGGTTCAGTACCAGCTTGCCGATGCGCTGGACAAAGCTGCCCGCAGC
GGCCACCTCGAAGTGGTGCGCGTGCTGCGGCGGCACGACGTGCAAGGGTC
GTGGGGTTCCGAGGAGACCGGGAGCGCAGCGCAGGAGGGACGATTGGAGG
ACCTGCAGCGCCTTTACGACACTGGCCACAGCGTATGTGAGTCAGCTGTG
GACGCAGCCGCGGCAGCCGGCCACATGGAGGTTTTGAAGCAACAGTATGA
GGCTGGCTACCCTGTTTTAAGCGCAACGCGCGCGTCAGCGGCCGAGCATG
GTCACCTGCACGTGCTACAGTACCTCCACTCAGTAGGCGCGCTGTGCGCG
CAGAGGGGGGAGCAGGATGCAACCATGTGTAGCGCAGCAAGCGGTGGCCA
TTTGCATGTGGTGCAATGGTTGCATGATGGATGCGGCCAGCCACTCACCA
TGGCGGTTCACGAGGCGGCTACGCGCAGCGGCAACCTTGACTTGCTCCAG
TGGCTGCACTCTCGCAGATGCCCCTTGAGTGCCGAAGCATGCTCCATAGC
AGCATGGGAGCATGGCAACTTTGATATGCTTGGAGGGTGGAGGGTCTGGT
TGTTGGACAAAACGCAGTGTCCCCTTCAAGCCGGGTATGCCCGCGAGGCT
GTTGCGCACGGGCACATGCCGGTACTGCGCACACTGTGCGACCGTGGCTG
CACCTTGGACGCCGCAGTGTTTGAAGCGGCAGCAGGGAGCGGCTCACTCG
ACGCACTGCAGCTTTTGAGAGAGCAAAAGTGCCCATGGGAATCCGATGCC
AAGACTTGCTTGGCGGCCATTAGGGAGGGACATGTTGCGGCCGTCCAGTG
GCTCAGAAATGCCCGGTGCCCATTGCAGTGGCCAAAGTTGCGCGATGGGC
ATGTAGCAGTTGAGTGTGCCAGGCGGGGGGACGTGAACATGCTCAAGTGG
GTCGTAAGCAACGGTTGCATTTGGAATGAGCAGTACCGGCAGAGCTGCAC
TGTGGTTGCAGAGAAGCAACAGCACACAGAGGTAGTCGAGTGGCTTTGCA
GCAGTGAAAGCCAGAAAACAAAGAAAGCCAAGCACAAGCAGAGGAAGCAA
GGCGCGCCATCTGTTGCTTAA