mRNA_2761 (mRNA) Tribonema minus UTEX_B_3156

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
Namejgi.p|Trimin1|159185
Unique NamemRNA_2761
TypemRNA
OrganismTribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Homology
BLAST of jgi.p|Trimin1|159185 vs. uniprot
Match: A0A836C8F1_9STRA (Kinase-like domain-containing protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836C8F1_9STRA)

HSP 1 Score: 608 bits (1568), Expect = 1.560e-219
Identity = 316/316 (100.00%), Postives = 316/316 (100.00%), Query Frame = 1
Query:    1 MFHSAACESLTPGASAGRWKISECIARGSFGGSVHIALDQRNGQLAAVKLVPLLLRQRSDRDGXXXXXXXRALFHEAALMRQLHHPNIVGFLSVEIRNAHMCIFQELVPGGSVAALLQRFGALPEAMARCYARQALAGIEYLHKCRIAHRDLKASNMLVDAHSVLKLADFGTSVLLPDSSSLDSHSVSLTARTCAIPASGAVHGTPYFMAPEMLQRQAHGLAVDTWGFGGALLQMVSGAPPWSGAGVKSPAALLRHMRARDGAPPPLPPRASPPLRALLRACFRWDAAARPTAQQLRRHEFFCGGDSGADRCATAA 948
            MFHSAACESLTPGASAGRWKISECIARGSFGGSVHIALDQRNGQLAAVKLVPLLLRQRSDRDGXXXXXXXRALFHEAALMRQLHHPNIVGFLSVEIRNAHMCIFQELVPGGSVAALLQRFGALPEAMARCYARQALAGIEYLHKCRIAHRDLKASNMLVDAHSVLKLADFGTSVLLPDSSSLDSHSVSLTARTCAIPASGAVHGTPYFMAPEMLQRQAHGLAVDTWGFGGALLQMVSGAPPWSGAGVKSPAALLRHMRARDGAPPPLPPRASPPLRALLRACFRWDAAARPTAQQLRRHEFFCGGDSGADRCATAA
Sbjct:    1 MFHSAACESLTPGASAGRWKISECIARGSFGGSVHIALDQRNGQLAAVKLVPLLLRQRSDRDGXXXXXXXRALFHEAALMRQLHHPNIVGFLSVEIRNAHMCIFQELVPGGSVAALLQRFGALPEAMARCYARQALAGIEYLHKCRIAHRDLKASNMLVDAHSVLKLADFGTSVLLPDSSSLDSHSVSLTARTCAIPASGAVHGTPYFMAPEMLQRQAHGLAVDTWGFGGALLQMVSGAPPWSGAGVKSPAALLRHMRARDGAPPPLPPRASPPLRALLRACFRWDAAARPTAQQLRRHEFFCGGDSGADRCATAA 316          
BLAST of jgi.p|Trimin1|159185 vs. uniprot
Match: A0A835YLS7_9STRA (Kinase-like domain-containing protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YLS7_9STRA)

HSP 1 Score: 261 bits (666), Expect = 4.360e-83
Identity = 149/287 (51.92%), Postives = 178/287 (62.02%), Query Frame = 1
Query:   49 GRWKISECIARGSFGGSVHIALDQRNGQLAAVKLVPLLLRQRSDRDGXXXXXXXRALFHEAALMRQLHHPNIVGFLSVEIRNAH--MCIFQELVPGGSVAALLQRFGALPEAMARCYARQALAGIEYLHKCRIAHRDLKASNMLVDAHSVLKLADFGTSVLLPDSSSLDSHSVSLTARTCAIPASGAVHGTPYFMAPEMLQRQAHGLAVDTWGFGGALLQMVSGAPPWSGAGVKSPAALLRHMRARDGAPPPLPPRASPPLRALLRACFRWDAAARPTAQQLRRHEF 903
            G+WK+   IARGSFG  V++ L++  G L AVK++ L   + SDRD          L  E ALMR   HPNIV +L  EIR  H  +CIFQE VPGGSV++LLQRFG   E M R Y RQAL G+ YLH   + HRD+  SN+LVD H V+KLADFG S+ L D++                 A GA+ GTPYFMAPE+LQR AHG+ VD W FGGA+LQMVSG PPW   GV +P ALL+ +  R G  PPLP   S  LRA L  CFRWD A RPTA +L    F
Sbjct:    5 GKWKLGNRIARGSFG-VVYMGLNEATGALMAVKVLSL---RGSDRD-------LHELHREMALMRAFSHPNIVSYLGAEIREEHDQLCIFQEWVPGGSVSSLLQRFGPFSEDMTRGYTRQALQGLAYLHSHHVVHRDINGSNILVDDHGVVKLADFGASLQLSDAAGSR--------------ADGALKGTPYFMAPEVLQRSAHGMPVDVWSFGGAVLQMVSGEPPWFSYGVSTPYALLQALLERRGQTPPLPADLSAGLRAFLERCFRWDPAERPTAAELALDPF 266          
BLAST of jgi.p|Trimin1|159185 vs. uniprot
Match: A0A835YLD7_9STRA (Kinase-like domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YLD7_9STRA)

HSP 1 Score: 261 bits (667), Expect = 4.100e-82
Identity = 147/287 (51.22%), Postives = 181/287 (63.07%), Query Frame = 1
Query:   49 GRWKISECIARGSFGGSVHIALDQRNGQLAAVKLVPLLLRQRSDRDGXXXXXXXRALFHEAALMRQLHHPNIVGFLSVEIR--NAHMCIFQELVPGGSVAALLQRFGALPEAMARCYARQALAGIEYLHKCRIAHRDLKASNMLVDAHSVLKLADFGTSVLLPDSSSLDSHSVSLTARTCAIPASGAVHGTPYFMAPEMLQRQAHGLAVDTWGFGGALLQMVSGAPPWSGAGVKSPAALLRHMRARDGAPPPLPPRASPPLRALLRACFRWDAAARPTAQQLRRHEF 903
            G+WK+   IARGSFG  V++ L++  G+L AVK++ L     S+RD        R L  E ALMRQ  HPNIV +L  EIR  +  +CIFQE VPGGSV++LL+RFG   E M R Y RQAL G+ YLH+ ++ HRD+K SN+LVD    +KLADFG S+ + D                A    GA+ GTPYFMAPE+LQR+ HG  VD W FGGA+LQMV+G PPW  AGV +P ALL+ M  R G PPPLP   SP L A+LR CF WD A RP+A QL    F
Sbjct:   89 GKWKLGNRIARGSFG-VVYMGLNEVTGELMAVKVLSL---HGSERD-------MRELHREMALMRQFSHPNIVSYLGAEIREEDGQLCIFQEWVPGGSVSSLLRRFGPFSEDMTRRYTRQALRGLTYLHQHQVVHRDIKGSNILVDDRGTVKLADFGASICVSDP---------------ADAGGGALKGTPYFMAPEVLQRKPHGPLVDIWSFGGAILQMVTGEPPWYSAGVSTPYALLQTMLERKGQPPPLPANLSPSLAAMLRRCFSWDPALRPSAAQLELDAF 349          
BLAST of jgi.p|Trimin1|159185 vs. uniprot
Match: A0A835YMG7_9STRA (Kinase-like domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YMG7_9STRA)

HSP 1 Score: 238 bits (607), Expect = 5.250e-75
Identity = 136/220 (61.82%), Postives = 148/220 (67.27%), Query Frame = 1
Query:  112 LDQRNGQLAAVKLVPLLLRQRSDRDGXXXXXXXRALFHEAALMRQLHHPNIVGFLSVEIRNAHMCIFQELVPGGSVAALLQRFGALPEAMARCYARQALAGIEYLHKCRIAHRDLKASNMLVDAHSVLKLADFGTSVLLPDSSSLDSHSVSLTARTCAIPASGAVHGTPYFMAPEMLQRQAHGLAVDTWGFGGALLQMVSGAPPWSGAGVKSPAALLRHM 771
            +D   G+LAAVKL+ L  R              R L HEAALMR L HPNIV FL  E     + IFQE VPGGSVAALL RFG   E M R YARQALAGI YLH   IAHRD+K SNMLV A+ VLKLADFGTSV++P  +         TAR   I ASG+V GTPYFMAPE+LQR AHGL VD WGFGGALLQM +GAPPWS AG  SP ALLRHM
Sbjct:    1 MDDATGKLAAVKLLQLPPRASPG--------TPRKLHHEAALMRDLQHPNIVHFLGTETHGTELRIFQEWVPGGSVAALLSRFGPFSEPMTRSYARQALAGIAYLHGRHIAHRDIKGSNMLVGANGVLKLADFGTSVVVPADN---------TAR--GISASGSVQGTPYFMAPEVLQRSAHGLPVDIWGFGGALLQMATGAPPWSAAGATSPVALLRHM 201          
BLAST of jgi.p|Trimin1|159185 vs. uniprot
Match: A0A836CHV3_9STRA (Kinase-like domain-containing protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CHV3_9STRA)

HSP 1 Score: 216 bits (550), Expect = 1.420e-65
Identity = 130/294 (44.22%), Postives = 166/294 (56.46%), Query Frame = 1
Query:   49 GRWKISECIARGSFGGSVHIALDQRNGQLAAVKLVPLLLRQRSDRDGXXXXXXXRALFHEAALMRQLHHPNIVGFLSVEIRNAHMCIFQELVPGGSVAALLQRFGALPEAMARCYARQALAGIEYLHKCRIAHRDLKAS------NMLVDAHSVLKLADFGTSVLLPDSSSLDSHSVSLTARTCAIPASGAVHGTPYFMAPEMLQRQAHGLAVDTWGFGGALLQMVSGAPPW-SGAGV-KSPAALLRHMRARDGAPPPLPPRASPPLRALLRACFRWDAAARPTAQQLRRHEFF 906
            G+WK+  CI RG+FG  VH+ L+Q  G+L AVK         +  +          L +E  LM++  HPNIVG+L  E+  + +CI QE VPGGS+ ++LQ FG   E + RCYA Q L GI YLH C I H DLK        N+LV    V+K+ADFGTS  + D    D H+               + GTPYFMAPE+LQRQ HG+AVD W F   +LQM++G  PW S  G  K   ALL+ M+      PPLPP  SP +RALL  CF WD A RPTA+ L +  +F
Sbjct:    4 GKWKLGPCIVRGAFG-QVHMGLNQMTGELIAVKACLTSFGNHNTAN---------QLTNEVLLMQRCRHPNIVGYLGAELHGSWVCILQEWVPGGSICSILQNFGPFTERVTRCYAHQILQGIMYLHSCGIVHHDLKGEKQIAGDNVLVSTSGVVKIADFGTSEQVFDLQ--DRHT--------------KLMGTPYFMAPEVLQRQRHGMAVDVWAFACVILQMLTGDAPWRSLLGTNKVVLALLQTMQTHRT--PPLPPDISPSMRALLVECFSWDPAGRPTAKDLLQSSYF 269          
BLAST of jgi.p|Trimin1|159185 vs. uniprot
Match: A0A835YKW2_9STRA (Kinase-like domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YKW2_9STRA)

HSP 1 Score: 218 bits (555), Expect = 6.910e-65
Identity = 127/282 (45.04%), Postives = 163/282 (57.80%), Query Frame = 1
Query:   55 WKISECIARGSFGGSVHIALDQRNGQLAAVKL--VPLLLRQRSDRDGXXXXXXXRALFHEAALMRQLHHPNIVGFLSVEIRNAHMCIFQELVPGGSVAALLQRFGALPEAMARCYARQALAGIEYLHKCRIAHRDLKASNMLVDAHSVLKLADFGTSVLLPDSSSLDSHSVSLTARTCAIPASGAVHGTPYFMAPEMLQRQAHGLAVDTWGFGGALLQMVSGAPPWSGAGVKSPAALLRHMRARDGAPPPLPPRASPPLRALLRACFRWDAAARPTAQQLRR 894
            W +   I RGSFG  VH+ L+Q  G+L A+K+  +PL +     + G        +L  E  +M QL H N V +L  E  +  + IFQ+ +PGGS++ALL RFG L E + R YARQAL G+ YLH   I HRDLK  N+L+D    +K+ADFGTS  +PD +                 A+  + GTPYFMAPEML R  HGL VD WGF   +LQM++   PW    V S  ALL  M+A     PPLPP  SP +RA+L  CFRWD A RPT++QL R
Sbjct:    2 WCLGPTIGRGSFG-EVHMGLNQITGELMAIKVCALPLCVAHSLRQPGAHACAKQHSLPREVFIMSQLQHRNTVRYLGAESDDDKVYIFQQWIPGGSISALLARFGPLSEHVTRLYARQALRGLAYLHANGIVHRDLKGDNLLIDGEGTIKIADFGTSARVPDGA-----------------AAAEMLGTPYFMAPEMLLRCDHGLPVDIWGFACTVLQMLTNRRPWHSCRVTSLPALLSVMQAALQRMPPLPPDMSPVMRAVLVNCFRWDPAERPTSRQLLR 265          
BLAST of jgi.p|Trimin1|159185 vs. uniprot
Match: A0A835Z180_9STRA (Kinase-like domain-containing protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z180_9STRA)

HSP 1 Score: 212 bits (539), Expect = 5.340e-64
Identity = 125/288 (43.40%), Postives = 165/288 (57.29%), Query Frame = 1
Query:   49 GRWKISECIARGSFGGSVHIALDQRNGQLAAVKLVPLLLRQRSDRDGXXXXXXXRALFHEAALMRQLHHPNIVGFLSVEIRNAHMCIFQELVPGGSVAALLQRFGALPEAMARCYARQALAGIEYLHKCRIAHRDLKASNMLVDAHSVLKLADFGTSVLLPDSSSLDSHSVSLTARTCAIPASGAVHGTPYFMAPEMLQRQAHGLAVDTWGFGGALLQMVSGAPPWSGA--GVKSPAALLRHMRARDGAPPPLPPRASPPLRALLRACFRWDAAARPTAQQLRRHEFF 906
            G W +   I RG+FG  VH+  +Q  G+L AV+ + L+  ++              L +E  LM++ HHPNIVG+L  E+  + +CI QE V GGS+ ++L  FGA P+ +  CYARQ L G+ YLH C I HRDLK  N+L+ A  V+K+ADFGTS  L D   L  +S  L              GTPYFMAPE+LQRQ HG+AVD W F   +LQM++G  PWS A    K+   LL+ M++     PPLPP     LR  L ACF WD+  RPTA+ L    +F
Sbjct:    4 GNWVLGSQIGRGAFG-QVHMGHNQVTGELIAVRRLCLVSDEKR--------AATSQLINEIQLMQRCHHPNIVGYLGAELHTSWVCILQEWVAGGSITSMLASFGAFPQPVTHCYARQLLQGVMYLHSCGIVHRDLKGDNVLISASGVVKIADFGTSKQLFD---LQDNSAQL-------------QGTPYFMAPEVLQRQPHGMAVDIWAFACVVLQMLTGDMPWSLALGTQKTVTQLLQIMQSERI--PPLPPDLDLSLRMALVACFSWDSVGRPTAKSLLHSGYF 264          
BLAST of jgi.p|Trimin1|159185 vs. uniprot
Match: A0A835Z0D0_9STRA (Kinase-like domain-containing protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z0D0_9STRA)

HSP 1 Score: 200 bits (508), Expect = 1.810e-60
Identity = 105/192 (54.69%), Postives = 131/192 (68.23%), Query Frame = 1
Query:  235 LMRQLHHPNIVGFLSVEIRNAHMCIFQELVPGGSVAALLQRFGALPEAMARCYARQALAGIEYLHKCRIAHRDLKASNMLVDAHSVLKLADFGTSVLLPDSSSLDSHSVSLTARTCAIPASGAVHGTPYFMAPEMLQRQAHGLAVDTWGFGGALLQMVSGAPPWSGAGVKSPAALLRHMRARDGA--PPPLP 804
            +MR+L H NIV +L  EIR  H+ IFQE VPGGS AAL++RFG L E++ARCY RQ L+G+ YLH  +IAHRD+K +N+L+DA    KLADFGTSV + D     S S   T           + GTPYFMAPE+++ +AHGLAVD W F G +LQMV+GA PWSG+G  +P ALLR + A   A  PPPLP
Sbjct:    1 MMRRLRHENIVSYLGAEIRGPHLYIFQEWVPGGSAAALIKRFGPLGESVARCYGRQVLSGLAYLHSHQIAHRDIKGANVLIDASGTAKLADFGTSVYVLDHPHNSSSSGGAT----------GIQGTPYFMAPEVMRGRAHGLAVDIWSFAGTILQMVTGAAPWSGSGAATPGALLRMVAAAHDARAPPPLP 182          
BLAST of jgi.p|Trimin1|159185 vs. uniprot
Match: A0A7S3UV54_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3UV54_HETAK)

HSP 1 Score: 196 bits (499), Expect = 2.110e-55
Identity = 116/287 (40.42%), Postives = 161/287 (56.10%), Query Frame = 1
Query:   49 GRWKISECIARGSFGGSVHIALDQRNGQLAAVKLVPLLLRQRSDRDGXXXXXXXRALFHEAALMRQLHHPNIVGFLSVEI--RNAHMCIFQELVPGGSVAALLQRFGALPEAMARCYARQALAGIEYLHKCRIAHRDLKASNMLVDAHSVLKLADFGTSVLLPDSSSLDSHSVSLTARTCAIPASGAVHGTPYFMAPEMLQRQAHGLAVDTWGFGGALLQMVSGAPPWSGAGVKSPAALLRHMRARDGAPPPLPPRASPPLRALLRACFRWDAAARPTAQQLRRHEF 903
            G+WKI + I +G FG  V++ L +  GQL A+K++ L   Q S+            L+ E  LMR L HPNIV +   E+      +CIFQ+ VPGGSVA+LL++FG   E + R Y +Q L G+ YLH  +I HRD+K +N+LVD   V+KLADFGTS  L  S  L   ++          A G + GTPYFMAPE++ RQ +G   D W  GGA+++M +G PPW    +++P  L R +      PP +    S PLR  L  CF  +   RP+A+ L +  F
Sbjct:   90 GQWKIGQRIGQGKFG-EVYVGLCEDTGQLIAIKIISLP-GQTSE---------LATLYREVDLMRSLRHPNIVSYFGAEVSEEECSLCIFQQWVPGGSVASLLKKFGPFREHVVRKYTKQLLKGLRYLHNNKIIHRDIKGANILVDVTGVVKLADFGTSKRLEISDELMQETM----------AHGTMKGTPYFMAPEVIMRQKYGRKADIWSLGGAVMEMATGDPPWKSLQMRNPIELFRFIHTHTH-PPNIDFSLSLPLRLFLERCFIRNPKERPSAKALLKDRF 354          
BLAST of jgi.p|Trimin1|159185 vs. uniprot
Match: A0A835YJU3_9STRA (Kinase-like domain-containing protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YJU3_9STRA)

HSP 1 Score: 189 bits (479), Expect = 4.550e-55
Identity = 120/287 (41.81%), Postives = 158/287 (55.05%), Query Frame = 1
Query:   52 RWKISECIARGSFGGSVHIALDQRNGQLAAVKLVPLLLRQRSDRDGXXXXXXXRALFHEAALMRQLHHPNIVGFLSVEIRNAHMCIFQELVPGGSVAALLQRFGALPEAMARCYARQALAGIEYLHKCRIAHRDLKASNMLVDAHSVLKLADFGTSVLLPDSSSLDSHSVSLTARTCAIPASGAVHGTPYFMAPEMLQRQAHGLAVDTWGFGGALLQMVSGAPPWS---GAGVKSPAALLRHMRARDGAPPPLPPRASPPLRALLRACFRWDAAARPTAQQLRRHEF 903
            +W +   + RG+FG  VH+ LDQ  G+  AVK   L+   RS             L +E  LM++  H NIV +L  E+  A + I QE VPGGS+ ++L  FGA  + + +CYARQ L G+ YLH C   HRDLK  N+LV A  ++K+ADFGTS  L D      H                + GT +FMAPE+LQRQ  G+AVD W F   +LQM +G  PW+   GA  + P  LLR M+A     PPLP   +P +RA L ACF W+ A RPTA+ L  H +
Sbjct:    2 KWALGPELGRGAFG-QVHMGLDQVTGEFIAVKAC-LISGGRSS--------TASKLSNEIRLMQRCRHVNIVQYLGTELSPAGVYIVQEWVPGGSITSILSNFGAFTQPVTQCYARQILHGLVYLHSCGTVHRDLKGDNVLVSAGGIVKIADFGTSEQLYDLQDDRGH----------------LQGTLHFMAPEVLQRQPQGMAVDVWAFACLVLQMHTGNMPWASELGARKRLPR-LLRLMQAHRM--PPLPNDLNPTMRAALTACFSWNPAERPTAKHLVHHGY 259          
The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|159185 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A836C8F1_9STRA1.560e-219100.00Kinase-like domain-containing protein (Fragment) n... [more]
A0A835YLS7_9STRA4.360e-8351.92Kinase-like domain-containing protein (Fragment) n... [more]
A0A835YLD7_9STRA4.100e-8251.22Kinase-like domain-containing protein n=1 Tax=Trib... [more]
A0A835YMG7_9STRA5.250e-7561.82Kinase-like domain-containing protein n=1 Tax=Trib... [more]
A0A836CHV3_9STRA1.420e-6544.22Kinase-like domain-containing protein (Fragment) n... [more]
A0A835YKW2_9STRA6.910e-6545.04Kinase-like domain-containing protein n=1 Tax=Trib... [more]
A0A835Z180_9STRA5.340e-6443.40Kinase-like domain-containing protein (Fragment) n... [more]
A0A835Z0D0_9STRA1.810e-6054.69Kinase-like domain-containing protein (Fragment) n... [more]
A0A7S3UV54_HETAK2.110e-5540.42Hypothetical protein n=1 Tax=Heterosigma akashiwo ... [more]
A0A835YJU3_9STRA4.550e-5541.81Kinase-like domain-containing protein (Fragment) n... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Contig_8contigContig_8:430450..432004 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Tribonema minus UTEX_B_31562021-06-17
Properties
Property NameValue
ProteomeIdTrimin1|159185|e_gw1.8.295.1
BRITEko00000,ko00001,ko01000,ko01001
KEGG Pathwayko04011,ko04139,map04011,map04139
KEGG koko:K11229
EC2.7.11.25
DescriptionMAP kinase kinase kinase activity
COG categoryS
Max annot lvl2759|Eukaryota
EggNOG OGsKOG0198@1|root,KOG0198@2759|Eukaryota
Evalue1.37e-54
Seed ortholog2880.D8LMN1
Hectar predicted targeting categoryother localisation
TranscriptId159507
TrackFilteredModels1
ProteinId159185
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|159185gene_2761Tribonema minus UTEX_B_3156 geneContig_8 430450..432004 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
exon_2761_1exon_2761_1Tribonema minus UTEX_B_3156 exonContig_8 430450..430868 +
exon_2761_2exon_2761_2Tribonema minus UTEX_B_3156 exonContig_8 431231..431445 +
exon_2761_3exon_2761_3Tribonema minus UTEX_B_3156 exonContig_8 431691..432004 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
CDS_2761CDS_2761Tribonema minus UTEX_B_3156 CDSContig_8 430450..430868 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|159185Trimin1|159185|e_gw1.8.295.1Tribonema minus UTEX_B_3156 polypeptideContig_8 430450..432004 +


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>mRNA_2761 ID=mRNA_2761|Name=jgi.p|Trimin1|159185|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=948bp|location=Sequence derived from alignment at Contig_8:430450..432004+ (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon.  
ATGTTCCACAGCGCCGCATGCGAGAGTCTCACGCCCGGTGCATCTGCGGG
CCGGTGGAAGATCAGCGAGTGCATCGCGCGCGGCTCCTTCGGCGGCTCCG
TCCACATAGCCCTCGACCAGCGCAACGGCCAGCTCGCGGCCGTGAAGCTG
GTGCCGCTGCTGCTGCGGCAGCGCTCGGACCGTGACGGCGGCGGCGGCGG
CGGCGCCGCGCGAGCGTTGTTCCACGAGGCAGCGCTCATGCGCCAGCTGC
ACCACCCGAACATCGTCGGCTTCCTCAGCGTAGAGATCCGCAACGCTCAC
ATGTGCATATTCCAGGAGTTGGTGCCCGGCGGCAGCGTGGCGGCGCTGCT
GCAGCGCTTCGGCGCGCTTCCGGAGGCCATGGCGCGGTGCTACGCGCGGC
AGGCGCTGGCGGGCATCGAGTACCTGCACAAGTGCCGGATCGCGCACAGG
GACCTGAAGGCCAGCAACATGCTGGTCGATGCTCACTCCGTCCTCAAGCT
CGCAGACTTCGGCACCAGCGTCCTGCTCCCCGACTCGTCGAGCCTCGACT
CGCACTCAGTCTCACTCACGGCCAGGACCTGTGCCATCCCCGCCTCCGGC
GCTGTTCATGGAACACCGTACTTCATGGCACCAGAGATGCTGCAGCGCCA
GGCGCACGGCCTCGCCGTCGACACCTGGGGCTTCGGCGGAGCGCTGCTGC
AGATGGTCAGCGGCGCGCCGCCGTGGAGCGGCGCAGGCGTCAAGTCGCCG
GCGGCGCTGCTGCGGCACATGCGCGCGCGCGATGGCGCGCCGCCGCCGCT
GCCGCCGCGCGCATCGCCGCCGCTCCGCGCGCTGCTGCGCGCGTGCTTCC
GCTGGGACGCCGCCGCGCGCCCCACCGCTCAGCAGCTGCGGCGCCACGAG
TTCTTCTGCGGCGGCGACAGCGGCGCCGATCGCTGCGCGACGGCAGCG
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protein sequence of jgi.p|Trimin1|159185

>Trimin1|159185|e_gw1.8.295.1 ID=Trimin1|159185|e_gw1.8.295.1|Name=jgi.p|Trimin1|159185|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=316bp
MFHSAACESLTPGASAGRWKISECIARGSFGGSVHIALDQRNGQLAAVKL
VPLLLRQRSDRDGGGGGGAARALFHEAALMRQLHHPNIVGFLSVEIRNAH
MCIFQELVPGGSVAALLQRFGALPEAMARCYARQALAGIEYLHKCRIAHR
DLKASNMLVDAHSVLKLADFGTSVLLPDSSSLDSHSVSLTARTCAIPASG
AVHGTPYFMAPEMLQRQAHGLAVDTWGFGGALLQMVSGAPPWSGAGVKSP
AALLRHMRARDGAPPPLPPRASPPLRALLRACFRWDAAARPTAQQLRRHE
FFCGGDSGADRCATAA
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mRNA from alignment at Contig_8:430450..432004+

Legend: exonpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_2761 ID=mRNA_2761|Name=jgi.p|Trimin1|159185|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=1555bp|location=Sequence derived from alignment at Contig_8:430450..432004+ (Tribonema minus UTEX_B_3156 )
ATGTTCCACAGCGCCGCATGCGAGAGTCTCACGCCCGGTGCATCTGCGGG CCGGTGGAAGATCAGCGAGTGCATCGCGCGCGGCTCCTTCGGCGGCTCCG TCCACATAGCCCTCGACCAGCGCAACGGCCAGCTCGCGGCCGTGAAGCTG GTGCCGCTGCTGCTGCGGCAGCGCTCGGACCGTGACGGCGGCGGCGGCGG CGGCGCCGCGCGAGCGTTGTTCCACGAGGCAGCGCTCATGCGCCAGCTGC ACCACCCGAACATCGTCGGCTTCCTCAGCGTAGAGATCCGCAACGCTCAC ATGTGCATATTCCAGGAGTTGGTGCCCGGCGGCAGCGTGGCGGCGCTGCT GCAGCGCTTCGGCGCGCTTCCGGAGGCCATGGCGCGGTGCTACGCGCGGC AGGCGCTGGCGGGCATCGAGTGAGTGAACTAGAGGTTGAACTTGAACTTC ATGCGGCATGCGCAGTTAGAGGGTAAGACTTGCACTGATGCGCATGTCAT CATGAGGTTGACATGCTTCGGCGCAGGGCATGTTGAAGTTTGAGCCTGGC TGCTGTTCGGCAAGTAGATGGGCGTGTATTTCGCCGCGATGCCAAGGATG TCACGTGACGCGTTGTCTGTCGCCTGCTTTCAGCCTGTTGAAGGGAGTCT CACACAGGCCTCTGCACTTCATCACATGTAGTACATGACAGTGCATTCCA TGGCCAAATGCGCTTTGTGAAATGTAAGCGCCTCACGAATCCTCTGCGCC CCTCCTTCCCCCCCCCCCCCCCCCCCCACAGGTACCTGCACAAGTGCCGG ATCGCGCACAGGGACCTGAAGGCCAGCAACATGCTGGTCGATGCTCACTC CGTCCTCAAGCTCGCAGACTTCGGCACCAGCGTCCTGCTCCCCGACTCGT CGAGCCTCGACTCGCACTCAGTCTCACTCACGGCCAGGACCTGTGCCATC CCCGCCTCCGGCGCTGTTCATGGAACACCGTACTTCATGGCACCAGGTGC ATATGCGACGTTGACTTCCAAAGTCGTCGAGCTCTCATCAACAGCGCTGT TGAGCAGGTGACCGTTAGGCACGATGGGTTGACCAATAGTCAATCACAAG TTGAGAGCGCCTTGATGCGTCTAATTGTCAGCATGATTCTACTTCAATTT TCAATTTGCCGAGAACCCTCGGAGGCTTCATCATGGCTGATGCAACAGCG CCATCGCCGCCGTCGCCGCCGCCGCTGCTTTATCGCACCAGAGATGCTGC AGCGCCAGGCGCACGGCCTCGCCGTCGACACCTGGGGCTTCGGCGGAGCG CTGCTGCAGATGGTCAGCGGCGCGCCGCCGTGGAGCGGCGCAGGCGTCAA GTCGCCGGCGGCGCTGCTGCGGCACATGCGCGCGCGCGATGGCGCGCCGC CGCCGCTGCCGCCGCGCGCATCGCCGCCGCTCCGCGCGCTGCTGCGCGCG TGCTTCCGCTGGGACGCCGCCGCGCGCCCCACCGCTCAGCAGCTGCGGCG CCACGAGTTCTTCTGCGGCGGCGACAGCGGCGCCGATCGCTGCGCGACGG CAGCG
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Coding sequence (CDS) from alignment at Contig_8:430450..432004+

>mRNA_2761 ID=mRNA_2761|Name=jgi.p|Trimin1|159185|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=948bp|location=Sequence derived from alignment at Contig_8:430450..432004+ (Tribonema minus UTEX_B_3156 )
ATGTTCCACAGCGCCGCATGCGAGAGTCTCACGCCCGGTGCATCTGCGGG
CCGGTGGAAGATCAGCGAGTGCATCGCGCGCGGCTCCTTCGGCGGCTCCG
TCCACATAGCCCTCGACCAGCGCAACGGCCAGCTCGCGGCCGTGAAGCTG
GTGCCGCTGCTGCTGCGGCAGCGCTCGGACCGTGACGGCGGCGGCGGCGG
CGGCGCCGCGCGAGCGTTGTTCCACGAGGCAGCGCTCATGCGCCAGCTGC
ACCACCCGAACATCGTCGGCTTCCTCAGCGTAGAGATCCGCAACGCTCAC
ATGTGCATATTCCAGGAGTTGGTGCCCGGCGGCAGCGTGGCGGCGCTGCT
GCAGCGCTTCGGCGCGCTTCCGGAGGCCATGGCGCGGTGCTACGCGCGGC
AGGCGCTGGCGGGCATCGAGTACCTGCACAAGTGCCGGATCGCGCACAGG
GACCTGAAGGCCAGCAACATGCTGGTCGATGCTCACTCCGTCCTCAAGCT
CGCAGACTTCGGCACCAGCGTCCTGCTCCCCGACTCGTCGAGCCTCGACT
CGCACTCAGTCTCACTCACGGCCAGGACCTGTGCCATCCCCGCCTCCGGC
GCTGTTCATGGAACACCGTACTTCATGGCACCAGAGATGCTGCAGCGCCA
GGCGCACGGCCTCGCCGTCGACACCTGGGGCTTCGGCGGAGCGCTGCTGC
AGATGGTCAGCGGCGCGCCGCCGTGGAGCGGCGCAGGCGTCAAGTCGCCG
GCGGCGCTGCTGCGGCACATGCGCGCGCGCGATGGCGCGCCGCCGCCGCT
GCCGCCGCGCGCATCGCCGCCGCTCCGCGCGCTGCTGCGCGCGTGCTTCC
GCTGGGACGCCGCCGCGCGCCCCACCGCTCAGCAGCTGCGGCGCCACGAG
TTCTTCTGCGGCGGCGACAGCGGCGCCGATCGCTGCGCGACGGCAGCG
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