mRNA_2701 (mRNA) Tribonema minus UTEX_B_3156

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
Namejgi.p|Trimin1|144507
Unique NamemRNA_2701
TypemRNA
OrganismTribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Homology
[Close]
BLAST of jgi.p|Trimin1|144507 vs. uniprot
Match: A0A835YL05_9STRA (Uncharacterized protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YL05_9STRA)

HSP 1 Score: 117 bits (294), Expect = 9.600e-34
Identity = 56/56 (100.00%), Postives = 56/56 (100.00%), Query Frame = 1 
Query:    1 HWRRQVDFCGGLQSKLVHFQTVEQLDASTSRQKVGNLLRAVGVSPESVPAFDVEFP 168
            HWRRQVDFCGGLQSKLVHFQTVEQLDASTSRQKVGNLLRAVGVSPESVPAFDVEFP
Sbjct:    1 HWRRQVDFCGGLQSKLVHFQTVEQLDASTSRQKVGNLLRAVGVSPESVPAFDVEFP 56
[Close]
BLAST of jgi.p|Trimin1|144507 vs. uniprot
Match: A0A835Z948_9STRA (Sulfotransferase family-domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z948_9STRA)

HSP 1 Score: 82.8 bits (203), Expect = 3.350e-17
Identity = 38/56 (67.86%), Postives = 42/56 (75.00%), Query Frame = 1 
Query:    1 HWRRQVDFCGGLQSKLVHFQTVEQLDASTSRQKVGNLLRAVGVSPESVPAFDVEFP 168
            HWR Q DFCGGL SKL HFQTVEQLD +TS +KV  LL  +GV PES+PAF   FP
Sbjct:  180 HWRPQSDFCGGLPSKLSHFQTVEQLDPATSHEKVSALLHTLGVQPESIPAFHRHFP 235
[Close]
BLAST of jgi.p|Trimin1|144507 vs. uniprot
Match: A0A835YXU8_9STRA (Sulfotransferase family-domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YXU8_9STRA)

HSP 1 Score: 75.9 bits (185), Expect = 8.080e-15
Identity = 35/57 (61.40%), Postives = 41/57 (71.93%), Query Frame = 1 
Query:    1 HWRRQVDFCGGLQSKLVHFQTVEQLDASTSRQKVGNLLRAVGVS-PESVPAFDVEFP 168
            HWR Q DFCGGL   L  FQT+E LDA TSR+KV  LL+ VG+  PES+PAF+  FP
Sbjct:  231 HWRPQADFCGGLSGMLSEFQTIEPLDARTSREKVAKLLKQVGIEDPESIPAFNERFP 287
[Close]
BLAST of jgi.p|Trimin1|144507 vs. uniprot
Match: A0A835Z0T9_9STRA (Sulfotransferase family-domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z0T9_9STRA)

HSP 1 Score: 75.1 bits (183), Expect = 1.090e-14
Identity = 35/57 (61.40%), Postives = 41/57 (71.93%), Query Frame = 1 
Query:    1 HWRRQVDFCGGLQSKLVHFQTVEQLDASTSRQKVGNLLRAVGVS-PESVPAFDVEFP 168
            HWR Q DFCGGL   L  FQT+E LDA TSR+KV  LL+ VG+  PES+PAF+  FP
Sbjct:  177 HWRPQADFCGGLSGILSEFQTIEPLDARTSREKVAKLLKQVGIEDPESIPAFNERFP 233
[Close]
BLAST of jgi.p|Trimin1|144507 vs. uniprot
Match: A0A835YYQ7_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YYQ7_9STRA)

HSP 1 Score: 67.8 bits (164), Expect = 2.140e-12
Identity = 30/33 (90.91%), Postives = 31/33 (93.94%), Query Frame = 1 
Query:    1 HWRRQVDFCGGLQSKLVHFQTVEQLDASTSRQK 99
            HWRRQ+ FCGGLQSKLVHFQTVEQLDA TSRQK
Sbjct:  179 HWRRQIHFCGGLQSKLVHFQTVEQLDAITSRQK 211
[Close]
BLAST of jgi.p|Trimin1|144507 vs. uniprot
Match: A0A836CJZ7_9STRA (Sulfotransferase family-domain-containing protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CJZ7_9STRA)

HSP 1 Score: 55.5 bits (132), Expect = 1.610e-7
Identity = 30/57 (52.63%), Postives = 38/57 (66.67%), Query Frame = 1 
Query:    1 HWRRQVDFCGGLQSKLVHFQTVEQLDASTSRQKVGNLL-RAVGVSPESVPAFDVEFP 168
            HWRRQ +FCGGL   +  FQ VE L+ +TSR+KVG LL RA   +  S  AF++ FP
Sbjct:  243 HWRRQHEFCGGLDRFIGEFQFVEVLERATSREKVGELLARAHVPNFNSDAAFNLRFP 299
The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|144507 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 6
Match NameE-valueIdentityDescription
A0A835YL05_9STRA9.600e-34100.00Uncharacterized protein (Fragment) n=1 Tax=Tribone... [more]
A0A835Z948_9STRA3.350e-1767.86Sulfotransferase family-domain-containing protein ... [more]
A0A835YXU8_9STRA8.080e-1561.40Sulfotransferase family-domain-containing protein ... [more]
A0A835Z0T9_9STRA1.090e-1461.40Sulfotransferase family-domain-containing protein ... [more]
A0A835YYQ7_9STRA2.140e-1290.91Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A836CJZ7_9STRA1.610e-752.63Sulfotransferase family-domain-containing protein ... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Contig_8contigContig_8:11650..11817 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Tribonema minus UTEX_B_31562021-06-17
Properties
Property NameValue
ProteomeIdTrimin1|144507|gw1.8.207.1
Hectar predicted targeting categoryno signal peptide or anchor
TranscriptId144829
TrackFilteredModels1
ProteinId144507
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|144507gene_2701Tribonema minus UTEX_B_3156 geneContig_8 11650..11817 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
exon_2701_1exon_2701_1Tribonema minus UTEX_B_3156 exonContig_8 11650..11817 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
CDS_2701CDS_2701Tribonema minus UTEX_B_3156 CDSContig_8 11650..11817 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|144507Trimin1|144507|gw1.8.207.1Tribonema minus UTEX_B_3156 polypeptideContig_8 11650..11817 +


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>mRNA_2701 ID=mRNA_2701|Name=jgi.p|Trimin1|144507|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=168bp|location=Sequence derived from alignment at Contig_8:11650..11817+ (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon.  
CACTGGCGACGGCAGGTTGACTTCTGCGGCGGCCTGCAGTCAAAGCTTGT
GCATTTTCAAACCGTGGAGCAGTTGGATGCCTCGACATCTCGACAAAAGG
TCGGAAATCTGCTGCGCGCCGTCGGCGTCAGCCCAGAGAGCGTTCCGGCA
TTCGACGTGGAATTTCCA
back to top

protein sequence of jgi.p|Trimin1|144507

>Trimin1|144507|gw1.8.207.1 ID=Trimin1|144507|gw1.8.207.1|Name=jgi.p|Trimin1|144507|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=56bp
HWRRQVDFCGGLQSKLVHFQTVEQLDASTSRQKVGNLLRAVGVSPESVPA
FDVEFP
back to top

mRNA from alignment at Contig_8:11650..11817+

Legend: exonpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_2701 ID=mRNA_2701|Name=jgi.p|Trimin1|144507|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=168bp|location=Sequence derived from alignment at Contig_8:11650..11817+ (Tribonema minus UTEX_B_3156 )
CACTGGCGACGGCAGGTTGACTTCTGCGGCGGCCTGCAGTCAAAGCTTGT
GCATTTTCAAACCGTGGAGCAGTTGGATGCCTCGACATCTCGACAAAAGG
TCGGAAATCTGCTGCGCGCCGTCGGCGTCAGCCCAGAGAGCGTTCCGGCA
TTCGACGTGGAATTTCCA
back to top

Coding sequence (CDS) from alignment at Contig_8:11650..11817+

>mRNA_2701 ID=mRNA_2701|Name=jgi.p|Trimin1|144507|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=168bp|location=Sequence derived from alignment at Contig_8:11650..11817+ (Tribonema minus UTEX_B_3156 )
CACTGGCGACGGCAGGTTGACTTCTGCGGCGGCCTGCAGTCAAAGCTTGT
GCATTTTCAAACCGTGGAGCAGTTGGATGCCTCGACATCTCGACAAAAGG
TCGGAAATCTGCTGCGCGCCGTCGGCGTCAGCCCAGAGAGCGTTCCGGCA
TTCGACGTGGAATTTCCA
back to top