mRNA_2700 (mRNA) Tribonema minus UTEX_B_3156

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
Namejgi.p|Trimin1|159115
Unique NamemRNA_2700
TypemRNA
OrganismTribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Homology
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BLAST of jgi.p|Trimin1|159115 vs. uniprot
Match: A0A836C8T5_9STRA (Uncharacterized protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836C8T5_9STRA)

HSP 1 Score: 323 bits (829), Expect = 3.330e-112
Identity = 156/156 (100.00%), Postives = 156/156 (100.00%), Query Frame = 1 
Query:    1 MPLGWRKTASASLLLAVLLYLPWGGYLAAAVRLNIGVTNYYTSNTTTQYDAATVADLKSRLYNKWIIVPEHKLLFCFIEKVGCTSFNELFRSLRSRYDPSQATGNIWGRNNMTVHGLTEADIDAYVEDPLWHKAVFFREPLVRFLSAFRSKCEPHD 468
            MPLGWRKTASASLLLAVLLYLPWGGYLAAAVRLNIGVTNYYTSNTTTQYDAATVADLKSRLYNKWIIVPEHKLLFCFIEKVGCTSFNELFRSLRSRYDPSQATGNIWGRNNMTVHGLTEADIDAYVEDPLWHKAVFFREPLVRFLSAFRSKCEPHD
Sbjct:    1 MPLGWRKTASASLLLAVLLYLPWGGYLAAAVRLNIGVTNYYTSNTTTQYDAATVADLKSRLYNKWIIVPEHKLLFCFIEKVGCTSFNELFRSLRSRYDPSQATGNIWGRNNMTVHGLTEADIDAYVEDPLWHKAVFFREPLVRFLSAFRSKCEPHD 156
[Close]
BLAST of jgi.p|Trimin1|159115 vs. uniprot
Match: A0A835YYQ7_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YYQ7_9STRA)

HSP 1 Score: 192 bits (487), Expect = 3.020e-59
Identity = 94/132 (71.21%), Postives = 107/132 (81.06%), Query Frame = 1 
Query:   70 GGYLAAAVRLNIGVTNYYTSNTTTQYDAATVADLKSRLYNKWIIVPEHKLLFCFIEKVGCTSFNELFRSLRSRYDPSQATGNIWGRNNMTVHGLTEADIDAYVEDPLWHKAVFFREPLVRFLSAFRSKCEPH 465
            G  L AAV+L+       TS +++Q    ++ D KS LYNKWIIVPEHKLLFCFIEKVGC SFN+LF+SLR+RYDP+QA   +WG NNMT H LTEADIDAYVEDPLWHKAVF+REPLVRFLSAFRSKCEPH
Sbjct:   21 GPSLGAAVQLDA------TSQSSSQ---PSLLDGKSNLYNKWIIVPEHKLLFCFIEKVGCKSFNQLFKSLRARYDPTQAAAGVWGSNNMTAHNLTEADIDAYVEDPLWHKAVFYREPLVRFLSAFRSKCEPH 143
[Close]
BLAST of jgi.p|Trimin1|159115 vs. uniprot
Match: A0A835Z948_9STRA (Sulfotransferase family-domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z948_9STRA)

HSP 1 Score: 146 bits (368), Expect = 4.780e-39
Identity = 74/113 (65.49%), Postives = 80/113 (70.80%), Query Frame = 1 
Query:  136 TTQYDAATVADLKSRLYNKWIIVPEHKLLFCFIEKVGCTSFNELFRSLRSRYDPSQATGNI-WGRNNMTVHGLTEADIDAYVEDPLWHKAVFFREPLVRFLSAFRSKCEP-HD 468
            TT       A +   LY  WIIVPE KLLFCFIEKVGC SFN+LFRS RSR+DP QA G   W  NNM  H ++EAD+D  V D  WHKAVFFREPL RFLSAFRSKCEP HD
Sbjct:   34 TTAAHVTAPAPVMDNLYQHWIIVPEIKLLFCFIEKVGCESFNDLFRSYRSRWDPRQAKGRKPWRLNNMKAHNMSEADVDRLVLDETWHKAVFFREPLERFLSAFRSKCEPGHD 146
[Close]
BLAST of jgi.p|Trimin1|159115 vs. uniprot
Match: A0A835YXU8_9STRA (Sulfotransferase family-domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YXU8_9STRA)

HSP 1 Score: 134 bits (336), Expect = 6.410e-35
Identity = 65/111 (58.56%), Postives = 77/111 (69.37%), Query Frame = 1 
Query:  139 TQYDAATVADLKSRLYNKWIIVPEHKLLFCFIEKVGCTSFNELFRSLRSRYDPSQATGNIWGRNNMTVHGLTEADIDAYVEDPLWHKAVFFREPLVRFLSAFRSKC--EPH 465
            T Y    +  L   L +  +++PEHKLLFCFI K  C SFN+LFRSLR RYDPS A G  +GRN+ T H +T   +  YV DP WHKAVF+REPLVRF+SAFRSKC  EPH
Sbjct:   87 TAYRRIALVQLPGDLTDHLLVIPEHKLLFCFIAKNNCLSFNDLFRSLRERYDPSLAEGPNFGRNSYTNHNMTLEQLTEYVYDPAWHKAVFYREPLVRFVSAFRSKCVREPH 197
[Close]
BLAST of jgi.p|Trimin1|159115 vs. uniprot
Match: A0A835Z0T9_9STRA (Sulfotransferase family-domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z0T9_9STRA)

HSP 1 Score: 126 bits (317), Expect = 1.370e-32
Identity = 57/96 (59.38%), Postives = 71/96 (73.96%), Query Frame = 1 
Query:  169 LKSRLYNKWIIVPEHKLLFCFIEKVGCTSFNELFRSLRSRYDPSQATGNIWGRNNMTVHGLTEADIDAYVEDPLWHKAVFFREPLVRFLSAFRSKC 456
            L   L +  +++PEHKLLFC+I K  C SFN+LFRSLR RYDPS A G  +GRN+ T H +T   +  Y+ DP WHKAVF+REPLVRF+SA+RSKC
Sbjct:   43 LPGDLADHLLVIPEHKLLFCYIAKNNCLSFNDLFRSLRERYDPSLAEGPSFGRNSYTNHNMTLEQLTEYIYDPTWHKAVFYREPLVRFVSAYRSKC 138
[Close]
BLAST of jgi.p|Trimin1|159115 vs. uniprot
Match: A0A835Z7D4_9STRA (Sulfotransferase family-domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z7D4_9STRA)

HSP 1 Score: 127 bits (319), Expect = 2.990e-32
Identity = 62/110 (56.36%), Postives = 76/110 (69.09%), Query Frame = 1 
Query:  133 TTTQYDAATVADLKSRLYNKWIIVPEHKLLFCFIEKVGCTSFNELFRSLRSRYDPSQATGNI-WGRNNMTVHGLTEADIDAYVEDPLWHKAVFFREPLVRFLSAFRSKCE 459
            TTT       A +   L + WIIVPEHKL+FCFI KV   +FN+LFRSLRSRYDP  A G + +G NN   H +T + +   V +P WHKAVF+REPLVRFLSA++SKCE
Sbjct:  106 TTTDESNNDAAWIPGDLMDHWIIVPEHKLMFCFIAKVNSAAFNQLFRSLRSRYDPQMAEGKVAFGLNNYLYHNMTVSQVAELVHNPSWHKAVFYREPLVRFLSAWKSKCE 215
[Close]
BLAST of jgi.p|Trimin1|159115 vs. uniprot
Match: A0A835Z974_9STRA (Sulfotransferase family-domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z974_9STRA)

HSP 1 Score: 107 bits (267), Expect = 3.870e-24
Identity = 55/112 (49.11%), Postives = 68/112 (60.71%), Query Frame = 1 
Query:  169 LKSRLYNKWIIVPEHKLLFCFIEKVGCTSFNELFRSLRSRYDPSQATGNI---------------WGRNNMTVHGLTEADIDAYVEDPLWHKAVFFREPLVRFLSAFRSKCE 459
            L   L +  I+VPEHKLLFCFI K    +FN+LFRSLR R+DPS  T                  +GRN    H L+  ++   V DP WHKAVF+REPLVRF+SA+RSKC+
Sbjct:  220 LSGDLVDHLIVVPEHKLLFCFIAKCNSLAFNDLFRSLRERHDPSMNTPESXXXXXXXXMADDSVKFGRNTYAYHNLSLEELTDRVYDPSWHKAVFYREPLVRFVSAYRSKCD 331
[Close]
BLAST of jgi.p|Trimin1|159115 vs. uniprot
Match: A0A835YPV5_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YPV5_9STRA)

HSP 1 Score: 97.8 bits (242), Expect = 4.350e-22
Identity = 45/72 (62.50%), Postives = 52/72 (72.22%), Query Frame = 1 
Query:  244 GCTSFNELFRSLRSRYDPSQATGNIWGRNNMTVHGLTEADIDAYVEDPLWHKAVFFREPLVRFLSAFRSKCE 459
             C SFN LF SLRSRYD S   G+IWGRN+M  H +T   +   V D  WHKAVF+REPLVR+LSA+RSKCE
Sbjct:    6 NCQSFNHLFTSLRSRYDESLLEGDIWGRNDMHSHNMTLPQLADLVYDDTWHKAVFYREPLVRYLSAYRSKCE 77
[Close]
BLAST of jgi.p|Trimin1|159115 vs. uniprot
Match: A0A836CJZ7_9STRA (Sulfotransferase family-domain-containing protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CJZ7_9STRA)

HSP 1 Score: 96.3 bits (238), Expect = 9.510e-21
Identity = 46/93 (49.46%), Postives = 60/93 (64.52%), Query Frame = 1 
Query:  196 IIVPEHKLLFCFIEKVGCTSFNELFRSLRSRYDPSQATGNIWGR------NNMTVHGLTEADIDAYVEDPLWHKAVFFREPLVRFLSAFRSKC 456
            +IVPE+KL+FCFI KV   SFN+L RSLR+ +DP    G  +GR      N+   H  +  D+   + DP W KAVF+REPL RF+SA+R KC
Sbjct:   87 LIVPEYKLIFCFIAKVSSLSFNDLLRSLRAPFDPGMLEGEAYGRIIPFGRNSYRSHNWSLQDLTDALHDPAWLKAVFYREPLTRFVSAYRDKC 179
[Close]
BLAST of jgi.p|Trimin1|159115 vs. uniprot
Match: A0A835Z3G3_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z3G3_9STRA)

HSP 1 Score: 92.8 bits (229), Expect = 2.210e-19
Identity = 43/78 (55.13%), Postives = 52/78 (66.67%), Query Frame = 1 
Query:  238 KVGCTSFNELFRSLRSRYDPSQATGNIWGRNNMTVHGLTEADIDAYVEDPLWHKAVFFREPLVRFLSAFRSKCEP-HD 468
            +V C +FN+LF SLRSRYDPS   G  W R +   H +    +   + DP WHKAVF+REPL RFLSA+RSKCE  HD
Sbjct:   40 EVNCLAFNKLFNSLRSRYDPSLLEGPAWNRTSHVQHRIKLKTLTRMIYDPTWHKAVFYREPLARFLSAYRSKCESGHD 117
The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|159115 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A836C8T5_9STRA3.330e-112100.00Uncharacterized protein (Fragment) n=1 Tax=Tribone... [more]
A0A835YYQ7_9STRA3.020e-5971.21Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A835Z948_9STRA4.780e-3965.49Sulfotransferase family-domain-containing protein ... [more]
A0A835YXU8_9STRA6.410e-3558.56Sulfotransferase family-domain-containing protein ... [more]
A0A835Z0T9_9STRA1.370e-3259.38Sulfotransferase family-domain-containing protein ... [more]
A0A835Z7D4_9STRA2.990e-3256.36Sulfotransferase family-domain-containing protein ... [more]
A0A835Z974_9STRA3.870e-2449.11Sulfotransferase family-domain-containing protein ... [more]
A0A835YPV5_9STRA4.350e-2262.50Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A836CJZ7_9STRA9.510e-2149.46Sulfotransferase family-domain-containing protein ... [more]
A0A835Z3G3_9STRA2.210e-1955.13Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Contig_8contigContig_8:11080..11547 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Tribonema minus UTEX_B_31562021-06-17
Properties
Property NameValue
ProteomeIdTrimin1|159115|e_gw1.8.165.1
DescriptionSulfotransferase family
COG categoryS
Max annot lvl2836|Bacillariophyta
EggNOG OGs2E1X5@1|root,2S96K@2759|Eukaryota,2XGMC@2836|Bacillariophyta
Evalue3.13e-11
Seed ortholog2850.Phatr44325
Hectar predicted targeting categorysignal peptide
TranscriptId159437
TrackFilteredModels1
ProteinId159115
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|159115gene_2700Tribonema minus UTEX_B_3156 geneContig_8 11080..11547 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
exon_2700_1exon_2700_1Tribonema minus UTEX_B_3156 exonContig_8 11080..11547 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
CDS_2700CDS_2700Tribonema minus UTEX_B_3156 CDSContig_8 11080..11547 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|159115Trimin1|159115|e_gw1.8.165.1Tribonema minus UTEX_B_3156 polypeptideContig_8 11080..11547 +


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>mRNA_2700 ID=mRNA_2700|Name=jgi.p|Trimin1|159115|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=468bp|location=Sequence derived from alignment at Contig_8:11080..11547+ (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon.  
ATGCCGCTTGGATGGCGGAAAACTGCTTCCGCATCTTTGCTCTTGGCCGT
CCTCCTATATCTTCCTTGGGGCGGATACTTGGCTGCCGCTGTGCGGTTAA
ACATCGGCGTGACCAACTACTACACCAGCAACACCACCACCCAGTACGAT
GCGGCCACGGTAGCAGACCTCAAAAGCAGATTGTACAACAAATGGATCAT
TGTGCCCGAGCACAAACTACTCTTCTGCTTCATCGAAAAGGTTGGGTGCA
CATCCTTCAACGAGTTGTTTAGGTCCTTGAGGTCTCGCTACGACCCCAGC
CAGGCAACCGGCAACATCTGGGGACGGAACAACATGACGGTGCATGGCCT
CACTGAGGCTGATATTGACGCTTATGTCGAGGACCCTTTGTGGCACAAAG
CGGTGTTCTTCCGGGAGCCACTGGTGCGTTTCCTGTCGGCGTTTCGCTCG
AAGTGCGAGCCACACGAC
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protein sequence of jgi.p|Trimin1|159115

>Trimin1|159115|e_gw1.8.165.1 ID=Trimin1|159115|e_gw1.8.165.1|Name=jgi.p|Trimin1|159115|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=156bp
MPLGWRKTASASLLLAVLLYLPWGGYLAAAVRLNIGVTNYYTSNTTTQYD
AATVADLKSRLYNKWIIVPEHKLLFCFIEKVGCTSFNELFRSLRSRYDPS
QATGNIWGRNNMTVHGLTEADIDAYVEDPLWHKAVFFREPLVRFLSAFRS
KCEPHD
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mRNA from alignment at Contig_8:11080..11547+

Legend: exonpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_2700 ID=mRNA_2700|Name=jgi.p|Trimin1|159115|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=468bp|location=Sequence derived from alignment at Contig_8:11080..11547+ (Tribonema minus UTEX_B_3156 )
ATGCCGCTTGGATGGCGGAAAACTGCTTCCGCATCTTTGCTCTTGGCCGT
CCTCCTATATCTTCCTTGGGGCGGATACTTGGCTGCCGCTGTGCGGTTAA
ACATCGGCGTGACCAACTACTACACCAGCAACACCACCACCCAGTACGAT
GCGGCCACGGTAGCAGACCTCAAAAGCAGATTGTACAACAAATGGATCAT
TGTGCCCGAGCACAAACTACTCTTCTGCTTCATCGAAAAGGTTGGGTGCA
CATCCTTCAACGAGTTGTTTAGGTCCTTGAGGTCTCGCTACGACCCCAGC
CAGGCAACCGGCAACATCTGGGGACGGAACAACATGACGGTGCATGGCCT
CACTGAGGCTGATATTGACGCTTATGTCGAGGACCCTTTGTGGCACAAAG
CGGTGTTCTTCCGGGAGCCACTGGTGCGTTTCCTGTCGGCGTTTCGCTCG
AAGTGCGAGCCACACGAC
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Coding sequence (CDS) from alignment at Contig_8:11080..11547+

>mRNA_2700 ID=mRNA_2700|Name=jgi.p|Trimin1|159115|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=468bp|location=Sequence derived from alignment at Contig_8:11080..11547+ (Tribonema minus UTEX_B_3156 )
ATGCCGCTTGGATGGCGGAAAACTGCTTCCGCATCTTTGCTCTTGGCCGT
CCTCCTATATCTTCCTTGGGGCGGATACTTGGCTGCCGCTGTGCGGTTAA
ACATCGGCGTGACCAACTACTACACCAGCAACACCACCACCCAGTACGAT
GCGGCCACGGTAGCAGACCTCAAAAGCAGATTGTACAACAAATGGATCAT
TGTGCCCGAGCACAAACTACTCTTCTGCTTCATCGAAAAGGTTGGGTGCA
CATCCTTCAACGAGTTGTTTAGGTCCTTGAGGTCTCGCTACGACCCCAGC
CAGGCAACCGGCAACATCTGGGGACGGAACAACATGACGGTGCATGGCCT
CACTGAGGCTGATATTGACGCTTATGTCGAGGACCCTTTGTGGCACAAAG
CGGTGTTCTTCCGGGAGCCACTGGTGCGTTTCCTGTCGGCGTTTCGCTCG
AAGTGCGAGCCACACGAC
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