mRNA_2637 (mRNA) Tribonema minus UTEX_B_3156

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
Namejgi.p|Trimin1|150974
Unique NamemRNA_2637
TypemRNA
OrganismTribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Homology
BLAST of jgi.p|Trimin1|150974 vs. uniprot
Match: A0A836C9S6_9STRA (Uncharacterized protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836C9S6_9STRA)

HSP 1 Score: 504 bits (1298), Expect = 1.360e-180
Identity = 250/250 (100.00%), Postives = 250/250 (100.00%), Query Frame = 1
Query:    1 QFGLSFTPGGLLFPYQLGICDAFMEAGFLTPEVPIAGSSAGALTTVVVGAGLDLREVLEETEALCEDCRTGGTRGRLRSVLVASLAKMLPEDVHERLNARAAPASVGYTALLPLPSGTLVSEFTSKEDVIGCLLASCHVPWWFNGSPVGRVRGQFVVDGFFGTPRGNFGAFPVPRAARTLRVSAFPSAIARIDAAHESEVIAPDLLGEGAFAADMLVMALNPGSTEQLTKLFEDGRKTGEIWLQKYGDMY 750
            QFGLSFTPGGLLFPYQLGICDAFMEAGFLTPEVPIAGSSAGALTTVVVGAGLDLREVLEETEALCEDCRTGGTRGRLRSVLVASLAKMLPEDVHERLNARAAPASVGYTALLPLPSGTLVSEFTSKEDVIGCLLASCHVPWWFNGSPVGRVRGQFVVDGFFGTPRGNFGAFPVPRAARTLRVSAFPSAIARIDAAHESEVIAPDLLGEGAFAADMLVMALNPGSTEQLTKLFEDGRKTGEIWLQKYGDMY
Sbjct:    1 QFGLSFTPGGLLFPYQLGICDAFMEAGFLTPEVPIAGSSAGALTTVVVGAGLDLREVLEETEALCEDCRTGGTRGRLRSVLVASLAKMLPEDVHERLNARAAPASVGYTALLPLPSGTLVSEFTSKEDVIGCLLASCHVPWWFNGSPVGRVRGQFVVDGFFGTPRGNFGAFPVPRAARTLRVSAFPSAIARIDAAHESEVIAPDLLGEGAFAADMLVMALNPGSTEQLTKLFEDGRKTGEIWLQKYGDMY 250          
BLAST of jgi.p|Trimin1|150974 vs. uniprot
Match: A0A835YPA3_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YPA3_9STRA)

HSP 1 Score: 271 bits (692), Expect = 5.680e-87
Identity = 134/251 (53.39%), Postives = 173/251 (68.92%), Query Frame = 1
Query:    7 GLSFTPGGLLFPYQLGICDAFMEAGFLTPEVPIAGSSAGALTTVVVGAGLDLREVLEETEALCEDCRTGGTRGRLRSVLVASLAKMLPEDVHERLNARAAPASVGY---TALLPLPSGTLVSEFTSKEDVIGCLLASCHVPWWFNGSPVGRVRGQFVVDGFFGTPRGNFGAFPVPRAARTLRVSAFPSAIARIDAAHESEVIAPDLLGEGAFAADMLVMALNPGSTEQLTKLFEDGRKTGEIWLQKYGDMY 750
            G SFTPGGLLFPYQ+GI  A +EAG L    P+ G SAG+LT V V +GL    V+EE +ALC DCR  GT  RL   L+ SL  MLP DVH  LNARA    V Y   TA L LP GT+ +E+ S+EDVI CLLASCHVP+W NG P   VRG++ +DGFFGTP  +FGA  +P A  T+RVSAFP+  ARI+A+ E  +I+PDLLG    AA M+ +A+NPGS +Q+  L++DG ++ ++WL ++G+ +
Sbjct:   68 GFSFTPGGLLFPYQIGIAKALVEAGLLKDSTPLVGGSAGSLTAVTVASGLCTDAVMEEVQALCADCRAHGTGLRLHGALLKSLHAMLPRDVHATLNARAGACGVLYATVTAALSLPVGTVATEYESREDVIHCLLASCHVPFWLNGLPATSVRGRYAIDGFFGTPAKHFGAPDIPYAQHTVRVSAFPAQFARIEASTEGGLISPDLLGSRRSAAAMMSLAMNPGSAQQVKDLYDDGLQSAQLWLDQHGERF 318          
BLAST of jgi.p|Trimin1|150974 vs. uniprot
Match: D8LBD4_ECTSI (PNPLA domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LBD4_ECTSI)

HSP 1 Score: 210 bits (534), Expect = 1.500e-63
Identity = 115/255 (45.10%), Postives = 150/255 (58.82%), Query Frame = 1
Query:    1 QFGLSFTPGGLLFPYQLGICDAFMEAGFLTPEVPIAGSSAGALTTVVVGAGLDLREVLEETEALCEDCRTGGTRGRLRSVLVASLAKMLPEDVHERLNARAAPASVGYTAL-LP-LPSGTLVSEFTSKEDVIGCLLASCHVPWWFNGSPVGRVRGQFVVDGFFGTPRGNFGAFPVPRAARTLRVSAFPSAIARIDAAHESEVIAPDLLGE---GAFAADMLVMALNPGSTEQLTKLFEDGRKTGEIWLQKYGDMY 750
            Q G SFTPGGLLFPY LG+       GFL+ + P+AGSSAGAL  VVVG GL +    E +  + +DC  GG   RLR+++   L   LPED HE LN R    +VG T L  P L     VS F S+ D+I  LL SCHVP+WF+G P  +VRGQ  VDGFF  PR  FGA  +P A   +R++ FP+    + +    ++I+PDLL     G F  ++L  ALNPG+     +LF  G ++G +W  KYG+ Y
Sbjct:   43 QIGFSFTPGGLLFPYHLGVAKCLEMEGFLSNDTPLAGSSAGALAAVVVGCGLSIDTAAELSGRVFDDCSDGGAAFRLRNIVQKGLDGALPEDAHEILNNREGAVTVGITQLGFPSLKKSVFVSNFESRADLIEVLLGSCHVPFWFSGQPYMQVRGQPTVDGFFAMPRAQFGAPDIPTADEVVRITVFPTTSVPMQSDKPGDLISPDLLDRYQSGRFM-ELLNYALNPGNDFVQEELFNAGFESGGVWCDKYGEDY 296          
BLAST of jgi.p|Trimin1|150974 vs. uniprot
Match: A0A6S9HSH1_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A6S9HSH1_HETAK)

HSP 1 Score: 177 bits (449), Expect = 3.000e-50
Identity = 106/257 (41.25%), Postives = 144/257 (56.03%), Query Frame = 1
Query:    1 QFGLSFTPGGLLFPYQLGICDAFMEAGFLTPEVPIAGSSAGALTTVVVGAGLDLREVLEETEALCEDCRTGGTRGRLRSVLVASLAKMLPEDVHERLNARAAPASVGYTAL----LPLPSGTLVSEFTSKEDVIGCLLASCHVPWWFNGSPVGRVRGQFVVDGFFGTPRGNFGAFPVP--RAARTLRVSAFPSAIARIDAAHESEVIAPDLLGEGAFAA---DMLVMALNPGSTEQLTKLFEDGRKTGEIWLQKYGD 744
            +FG SF+PGGLLFPYQ+GI    +EAG +T + P+ G+SAGAL  V +GAGLD+  +      L  + R  G R  +   L   L   LPEDVHE LN R     V  T L    LP P G ++  + SK DVI  L+ASC+VP W   +P+ R RG+  +DGFFG P+G FGA  +   RA  T+RV   P A   +      +VI+P +  + +F     D+L  ALNP   E+L +L+  G++ G  W   +GD
Sbjct:   61 RFGFSFSPGGLLFPYQIGIAKYLLEAGLITEDTPLCGASAGALCAVALGAGLDIDVLFAACGDLMAELRPKGARHHIWHALRRQLETFLPEDVHEVLNRRPGGVGVAVTFLVGGYLPYPRGEVIFHWRSKADVIEVLMASCNVPMWTTWTPMVRCRGRPAMDGFFGQPKGCFGAAALHPHRARHTVRVLPGPQADVDVRCTIPGDVISPSV--DPSFTQTFKDLLQDALNPYGQERLEELYAQGQRDGARW-HAHGD 314          
BLAST of jgi.p|Trimin1|150974 vs. uniprot
Match: A0A6S9J7B1_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A6S9J7B1_HETAK)

HSP 1 Score: 171 bits (434), Expect = 1.930e-48
Identity = 102/250 (40.80%), Postives = 140/250 (56.00%), Query Frame = 1
Query:    1 QFGLSFTPGGLLFPYQLGICDAFMEAGFLTPEVPIAGSSAGALTTVVVGAGLDLREVLEET-EALCEDCRTGGTRGRLRSVLVASLAKMLPEDVHERLNARAAPASVGYTALLPLPSGTLVSEFTSKEDVIGCLLASCHVPWWFNGSPVGRVRGQFVVDGFFGTPRGNFGAFPV--PRAARTLRVSAFPSAIARIDAAHESEVIAPDLLGEGAFA-ADMLVMALNPGSTEQLTKLFEDGRKTGEIWLQKY 738
            +FG +F+PGGLLFPYQLG+  A +E G LT + PI+G+SAGAL +VV  A +D  E L+   E L E    GG +  +R  L + L  +LP DV + LN R     V  T + PLP G +V+EF S+ DV+  LLASC VP+WF   P    RG+  VDGFF  PR  FG   +    AA T+RV  FPSA   + +    ++++PD+  E  +A  ++L +AL+      L  L   G      W  K+
Sbjct:   77 RFGFAFSPGGLLFPYQLGVAKALVETGLLTDKTPISGASAGALVSVVAAANIDFAEALDGCGEILAECAAKGGAQYNIRGALESQLNDLLPLDVADLLNNRPGGCGVVVTEMSPLPRGRVVTEFRSRRDVVELLLASCCVPFWFTPGPAIMCRGRPHVDGFFAFPREAFGCPDLGPAGAATTVRVLPFPSASLGMQSTVPGDILSPDIDPEFPYAFQELLALALSTYDGALLRGLHGAGEAHAGRWAAKH 326          
BLAST of jgi.p|Trimin1|150974 vs. uniprot
Match: A0A8J5XDS6_DIALT (PNPLA domain-containing protein n=1 Tax=Diacronema lutheri TaxID=2081491 RepID=A0A8J5XDS6_DIALT)

HSP 1 Score: 157 bits (398), Expect = 2.330e-42
Identity = 97/254 (38.19%), Postives = 142/254 (55.91%), Query Frame = 1
Query:   13 SFTPGGLLFPYQLGICDAFMEAGFLTPEV-PIAGSSAGALTTVVVGAGLDLREVLEETEALCEDCRTGGTRGRLRSVLVASLAKMLPEDVHERLNARAAPASVGYTALLPLPSGTLVSEFTSKEDVIGCLLASCHVPWWFNGSPVGRVRGQFVVDGFFGTPRGNFGAFPVPRAARTLRVSAFPS----AIARIDAAHESEVIAPDLLGEGAFAA------DMLVMALNPGSTEQLTKLFEDGRKTGEIWLQKYG 741
            SF+ GGLLFPYQLG+  +  ++G + P V P++GSSAG+L   V+  GLDL  V+   EA+  DCR GGT GRL S+L   L   LP D  ERL+      +V Y  +LPLP     + F  ++D+   L ASC+ P++   +P+ R RG   +DG+F  PR      P+  A RT+ VSAFP+     +  +  AH+  +I P++  +G F        + L  AL   S  +  +LFE GR+ G +W +++G
Sbjct:  136 SFSVGGLLFPYQLGVGVSLTDSGHIVPGVTPLSGSSAGSLVATVLALGLDLELVMARLEAILADCRAGGTAGRLGSILERELVSALPADCAERLSNGC--LTVAYMRMLPLPRAVRCAAFKDRDDLFEVLRASCNWPFFLARAPLVRCRGNLSLDGYFVAPRTLGCLVPMHNAHRTVAVSAFPAFAVPTMRELVPAHD--LIHPNM--DGRFPGPPEGLPEWLQSALQAYSPARAHELFEMGRRHGSLWAERHG 383          
BLAST of jgi.p|Trimin1|150974 vs. uniprot
Match: A0A383W6K6_TETOB (PNPLA domain-containing protein n=1 Tax=Tetradesmus obliquus TaxID=3088 RepID=A0A383W6K6_TETOB)

HSP 1 Score: 152 bits (385), Expect = 9.310e-41
Identity = 95/250 (38.00%), Postives = 133/250 (53.20%), Query Frame = 1
Query:    1 QFGLSFTPGGLLFPYQLGICDAFMEAGFLTPEVPIAGSSAGALTTVVVGAGLDLREVLEETEALCEDCRTGGTRGRLRSVLVASLAKMLPEDVHERLNARAAPASVGYTALLPLPSGTLVSEFTSKEDVIGCLLASCHVPWWFNGSPVGRVRGQFVVDGFFGTPRGNFGAFP-VPRAARTLRVSAFPSA-IARIDAAHESEVIAPDLLGEGAFAAD-MLVMALNPGSTEQLTKLFEDGRKTGEIWLQKYG 741
            +    F+ GGLLFPY LG+ +     G +TP+  +AG+SAG+L    + +GL L  + E    L +DCR  GTR RL+ VL   L ++LP+D+ +R + +     V  T L P  +  LVS F+ +ED++G LL SCH+PW+F+GS     R     DG F     NF   P VP A  T R+   PS  +ARI     S  I+PD   E  ++   ML  A  P   EQL  L E G++    W+Q+ G
Sbjct:   82 KLAFGFSAGGLLFPYYLGVAEELQRLGVMTPDSQLAGASAGSLIVACLKSGLPLATITEACFQLADDCRRNGTRHRLKLVLERVLREVLPQDIAQRCSGQ---VHVAVTRLTPGVTPRLVSRFSDREDLLGALLTSCHIPWYFDGSLFTSFRNTPCFDGGFT----NF--LPDVPGADATCRICCLPSKQLARIG----SIAISPDAFAEWPYSLQQMLGWAFEPADEEQLRVLIECGKRDALAWVQQSG 318          
BLAST of jgi.p|Trimin1|150974 vs. uniprot
Match: A0A835LUE2_9MAGN (Patatin n=1 Tax=Coptis chinensis TaxID=261450 RepID=A0A835LUE2_9MAGN)

HSP 1 Score: 149 bits (377), Expect = 1.700e-39
Identity = 92/244 (37.70%), Postives = 125/244 (51.23%), Query Frame = 1
Query:    7 GLSFTPGGLLFPYQLGICDAFMEAGFLTPEVPIAGSSAGALTTVVVGAGLDLREVLEETEALCEDCRTGGTRGRLRSVLVASLAKMLPEDVHERLNARAAPASVGYTALLPLPSGTLVSEFTSKEDVIGCLLASCHVPWWFNGSPVGRVRGQFVVDGFFGTPRGNFGAFPVPRAARTLRVSAFPSAIARIDAAHESEVIAPDLLGEG-AFAADMLVMALNPGSTEQLTKLFEDGRKTGEIWLQK 735
            G SF+  GLLFPY LG+    +E G++    P+AGSSAGA+   V+ +G  ++E LE T+ L EDCR  GT  RL +VL   L K LP+DVH R N R     V  T +L  P G LV +F SKED+I  +  S  +P +    P    R +  +DG      G     P   A++T+RV AFP+    +    E   I+PD   E  A A ++   AL P     L +LFE G     +W  +
Sbjct:  129 GFSFSAAGLLFPYHLGVAHLLIEKGYIKDTTPLAGSSAGAIVCAVIASGSSMKEALEATKVLAEDCRLRGTAFRLGAVLRELLVKFLPDDVHTRSNGR---VRVAVTQILWRPRGLLVDQFDSKEDLINAVFTSSFIPGYLAPRPATLFRNRVCIDG------GVTLFMPPTSASKTVRVCAFPAERLGL----EGIGISPDCNPENRASARELFNWALEPAEDHVLDRLFELGYLDASVWADQ 359          
BLAST of jgi.p|Trimin1|150974 vs. uniprot
Match: UPI00053C60AA (patanin-like phospholipase domain-containing protein isoform X2 n=1 Tax=Tarenaya hassleriana TaxID=28532 RepID=UPI00053C60AA)

HSP 1 Score: 149 bits (376), Expect = 2.580e-39
Identity = 89/247 (36.03%), Postives = 127/247 (51.42%), Query Frame = 1
Query:    7 GLSFTPGGLLFPYQLGICDAFMEAGFLTPEVPIAGSSAGALTTVVVGAGLDLREVLEETEALCEDCRTGGTRGRLRSVLVASLAKMLPEDVHERLNARAAPASVGYTALLPLPSGTLVSEFTSKEDVIGCLLASCHVPWWFNGSPVGRVRGQFVVDG---FFGTPRGNFGAFPVPRAARTLRVSAFPSAIARIDAAHESEVIAPDLLGEGAFAADMLV-MALNPGSTEQLTKLFEDGRKTGEIWLQK 735
            G SF+ GGLLFPY LG+    +E G++    P+AGSSAGA+   V+  GL +++ LE T+ + +DCR  GT  RL ++L   L ++LP+D H   N R     V  T +   P G LV +F SK D+I  L  S  +P +F+ SP    R +  +DG   FF          P   A++T+RVSAFP++   +    +   I+PD   E       L+  A  P   E L +LFE G      W +K
Sbjct:  124 GFSFSVGGLLFPYHLGVAQFLIEKGYIKETTPLAGSSAGAIICAVIACGLSMQKALEATKTIADDCRRKGTAFRLGALLRDCLEELLPDDAHTSCNGR---IRVAVTQITWRPRGLLVDQFDSKGDLINALFTSSFIPGYFSASPATVFRNRLCIDGGLTFF---------MPPTSASKTIRVSAFPASTFGV----KGIAISPDCNPENRATPRQLINWAFEPAEDEALDRLFELGYADAASWAEK 354          
BLAST of jgi.p|Trimin1|150974 vs. uniprot
Match: A0A835THB5_CHLIN (PNPLA domain-containing protein n=2 Tax=Chlamydomonas TaxID=3052 RepID=A0A835THB5_CHLIN)

HSP 1 Score: 145 bits (367), Expect = 3.150e-39
Identity = 91/243 (37.45%), Postives = 119/243 (48.97%), Query Frame = 1
Query:    1 QFGLSFTPGGLLFPYQLGICDAFMEAGFLTPEVPIAGSSAGALTTVVVGAGLDLREVLEETEALCEDCRTGGTRGRLRSVLVASLAKMLPEDVHERLNARAAPASVGYTALLPLPSGTLVSEFTSKEDVIGCLLASCHVPWWFNGSPVGRVRGQFVVDGFFGTPRGNFGAFPVPRAARTLRVSAFPSAIARIDAAHESEVIAPDLLGEGAF-AADMLVMALNPGSTEQLTKLFEDGRKTGEIW 726
             +G  F+ GGLLFPY LGI +       L PE P+AG+SAG++  V   +GL   E+L     L  DCR GGTR RL+SVL   L   LP+D+HER N R   A +  T L P  +   +S F S+ DVI  LL S H+P+WF+GS     R     DG      G     P        RVS FPS   +     +   ++PD   +  +    ML  A  P S E L +L E G++    W
Sbjct:   10 DYGFGFSAGGLLFPYFLGISEQLQSMNVLLPETPVAGASAGSIIAVCAKSGLSEEELLVAFLDLARDCRQGGTRTRLKSVLRRVLETALPDDIHERCNGR---AHLAVTRLWPEFTPQTISSFRSRSDVIDTLLTSSHIPYWFDGSLFTMYRSGIYFDG------GITNFIPSTPTDVCYRVSCFPSQQLKT---FKDISLSPDTFEQWPYDMGTMLGWAFEPASEEMLLRLVEKGKRDARSW 240          
The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|150974 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A836C9S6_9STRA1.360e-180100.00Uncharacterized protein (Fragment) n=1 Tax=Tribone... [more]
A0A835YPA3_9STRA5.680e-8753.39Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
D8LBD4_ECTSI1.500e-6345.10PNPLA domain-containing protein n=2 Tax=Ectocarpus... [more]
A0A6S9HSH1_HETAK3.000e-5041.25Hypothetical protein n=1 Tax=Heterosigma akashiwo ... [more]
A0A6S9J7B1_HETAK1.930e-4840.80Hypothetical protein n=1 Tax=Heterosigma akashiwo ... [more]
A0A8J5XDS6_DIALT2.330e-4238.19PNPLA domain-containing protein n=1 Tax=Diacronema... [more]
A0A383W6K6_TETOB9.310e-4138.00PNPLA domain-containing protein n=1 Tax=Tetradesmu... [more]
A0A835LUE2_9MAGN1.700e-3937.70Patatin n=1 Tax=Coptis chinensis TaxID=261450 RepI... [more]
UPI00053C60AA2.580e-3936.03patanin-like phospholipase domain-containing prote... [more]
A0A835THB5_CHLIN3.150e-3937.45PNPLA domain-containing protein n=2 Tax=Chlamydomo... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Contig_7contigContig_7:1614587..1618077 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Tribonema minus UTEX_B_31562021-06-17
Properties
Property NameValue
ProteomeIdTrimin1|150974|gw1.7.276.1
GOsGO:0003674,GO:0003824,GO:0004806,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005737,GO:0005811,GO:0005829,GO:0005886,GO:0006629,GO:0006638,GO:0006639,GO:0006641,GO:0006996,GO:0008150,GO:0008152,GO:0009056,GO:0009893,GO:0009894,GO:0009896,GO:0009987,GO:0010876,GO:0010883,GO:0010888,GO:0010889,GO:0010891,GO:0010896,GO:0010898,GO:0016020,GO:0016042,GO:0016043,GO:0016298,GO:0016787,GO:0016788,GO:0019216,GO:0019222,GO:0019433,GO:0019915,GO:0031323,GO:0031325,GO:0031329,GO:0031331,GO:0031974,GO:0031981,GO:0032879,GO:0033036,GO:0034389,GO:0042592,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0044237,GO:0044238,GO:0044242,GO:0044248,GO:0044255,GO:0044422,GO:0044424,GO:0044428,GO:0044444,GO:0044446,GO:0044464,GO:0045834,GO:0046461,GO:0046464,GO:0046486,GO:0046503,GO:0048518,GO:0048519,GO:0048522,GO:0048878,GO:0050789,GO:0050794,GO:0050994,GO:0050996,GO:0051179,GO:0051235,GO:0052689,GO:0055088,GO:0065007,GO:0065008,GO:0070013,GO:0071704,GO:0071840,GO:0071944,GO:0080090,GO:0090207,GO:0090208,GO:1901575,GO:1905952,GO:1905953
Descriptiontriglyceride catabolic process
COG categoryS
Max annot lvl2759|Eukaryota
EggNOG OGsKOG3773@1|root,KOG3773@2759|Eukaryota
Evalue2.46e-64
Seed ortholog2880.D8LBD4
Hectar predicted targeting categoryother localisation
TranscriptId151296
TrackFilteredModels1
ProteinId150974
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|150974gene_2637Tribonema minus UTEX_B_3156 geneContig_7 1614587..1618077 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|150974Trimin1|150974|gw1.7.276.1Tribonema minus UTEX_B_3156 polypeptideContig_7 1614587..1618077 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
exon_2637_4exon_2637_4Tribonema minus UTEX_B_3156 exonContig_7 1614587..1614655 -
exon_2637_3exon_2637_3Tribonema minus UTEX_B_3156 exonContig_7 1615922..1616180 -
exon_2637_2exon_2637_2Tribonema minus UTEX_B_3156 exonContig_7 1616895..1617166 -
exon_2637_1exon_2637_1Tribonema minus UTEX_B_3156 exonContig_7 1617928..1618077 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
CDS_2637CDS_2637Tribonema minus UTEX_B_3156 CDSContig_7 1617928..1618077 -


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>mRNA_2637 ID=mRNA_2637|Name=jgi.p|Trimin1|150974|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=750bp|location=Sequence derived from alignment at Contig_7:1614587..1618077- (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon.  
CAGTTTGGTCTCAGCTTTACTCCTGGCGGGCTCTTATTTCCGTACCAATT
AGGGATCTGCGATGCTTTTATGGAAGCGGGCTTTCTTACACCGGAGGTGC
CAATTGCTGGCTCTTCTGCTGGAGCTTTGACGACTGTGGTCGTTGGTGCG
GGCCTGGACCTGCGAGAAGTCCTTGAGGAGACGGAGGCGCTGTGCGAGGA
CTGCCGCACCGGCGGCACGCGCGGCCGGCTGCGCAGCGTGCTCGTCGCGT
CGCTCGCCAAGATGCTGCCAGAGGACGTGCACGAGCGCCTCAACGCGCGC
GCGGCGCCGGCAAGCGTGGGCTACACGGCGCTGCTGCCGCTGCCGAGCGG
CACGCTCGTCTCCGAATTCACCTCCAAGGAGGACGTCATCGGGTGCCTGC
TGGCGTCGTGCCACGTGCCGTGGTGGTTCAACGGCAGCCCCGTGGGACGC
GTGCGCGGGCAGTTCGTCGTCGACGGCTTCTTCGGCACGCCGCGCGGCAA
CTTCGGCGCGTTCCCCGTGCCGCGCGCCGCGCGCACGCTGCGCGTGTCAG
CCTTCCCGTCCGCCATCGCGCGCATCGACGCGGCGCACGAGAGCGAGGTC
ATCGCGCCCGACCTGCTCGGCGAGGGCGCGTTTGCCGCGGACATGCTCGT
CATGGCGCTCAACCCTGGCTCCACGGAGCAGCTGACGAAGCTGTTTGAGG
ACGGGCGCAAGACGGGCGAGATCTGGCTGCAGAAGTACGGCGACATGTAC
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protein sequence of jgi.p|Trimin1|150974

>Trimin1|150974|gw1.7.276.1 ID=Trimin1|150974|gw1.7.276.1|Name=jgi.p|Trimin1|150974|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=250bp
QFGLSFTPGGLLFPYQLGICDAFMEAGFLTPEVPIAGSSAGALTTVVVGA
GLDLREVLEETEALCEDCRTGGTRGRLRSVLVASLAKMLPEDVHERLNAR
AAPASVGYTALLPLPSGTLVSEFTSKEDVIGCLLASCHVPWWFNGSPVGR
VRGQFVVDGFFGTPRGNFGAFPVPRAARTLRVSAFPSAIARIDAAHESEV
IAPDLLGEGAFAADMLVMALNPGSTEQLTKLFEDGRKTGEIWLQKYGDMY
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mRNA from alignment at Contig_7:1614587..1618077-

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_2637 ID=mRNA_2637|Name=jgi.p|Trimin1|150974|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=3491bp|location=Sequence derived from alignment at Contig_7:1614587..1618077- (Tribonema minus UTEX_B_3156 )
CAGTTTGGTCTCAGCTTTACTCCTGGCGGGCTCTTATTTCCGTACCAATT AGGGATCTGCGATGCTTTTATGGAAGCGGGCTTTCTTACACCGGAGGTGC CAATTGCTGGCTCTTCTGCTGGAGCTTTGACGACTGTGGTCGTTGGTGCG GTGAGTTCGTCATCTTTTCATACTGTCTTGTAAACAATACTGGTGAGCGT GCTAGTTCTGTGTACGTACAAGCTCGGTCAACTACTGCTGTTTGATCATT GCGATGTTGATTGTCCACTGTGTCCTGAAGCTCCGCCTGTAATTTTGAAC TCATTACAACTAAGGAGCGCTAGGGCATATGCTATTTCATTTGACTCCAG TGCTGGGCAAATTTGTCATTGTTCGCCTGGCAGTGTGTACTACTCAATTG CAAGTAGCTTCCGCGTCCTTTCGCAGCCTACTGCATGCACAGACCTATTG TGATCGAGTCCATGCATCGGGCACATGCCATGCGCTTGGAGTTTCAGGGG TCATCGGACAGCGACCGCCTGATGCTTATTATACGCTTTTACTGGCCTAG GTACTTCACACTTCCTGAGCGGCAAATATTGCATCCAGCTACAGTTCCAC TATGATCGCCGTCTGAAGGCACAGACGTCAGCGAGACGCGCCTGGCGCCA GAAGCGAACTGATCATGACAGCTCTGAGGCAGACACCCTCAACGTCTGTC GACGTCTGGGTGCGCAGTGAGCGTGCACGACGACGCTCGATCTCACCGCG TCACCGTCGAGACGTCGCAGCAGCGCCGCGCGCGCCCCCGCCGCAGGCTC ACCAACCATCCGCCGCGCCGCCGCCGCCGCCGCGCCGCCGCCGCCTCCGC CGCCGCCGCTGTCTCACTGACCATTTGCCGCGCCGCCGCCGCCACGCCGC TGCCGCCGCAGGGCCTGGACCTGCGAGAAGTCCTTGAGGAGACGGAGGCG CTGTGCGAGGACTGCCGCACCGGCGGCACGCGCGGCCGGCTGCGCAGCGT GCTCGTCGCGTCGCTCGCCAAGATGCTGCCAGAGGACGTGCACGAGCGCC TCAACGCGCGCGCGGCGCCGGCAAGCGTGGGCTACACGGCGCTGCTGCCG CTGCCGAGCGGCACGCTCGTCTCCGAATTCACCTCCAAGGAGGACGTCAT CGGGTGCCTGCTGGCGTCGTGCCACGTGCCGTGGTGGGTGCGGATGCGGA GGGGTGTTTGCGCTTCGCTGTTAGTGACGACTTGTTACGGTAGCTACTTA CAGTTGGGCGTGTACGCATGTACGCATGCAGAGAGAGGCAGACGGGACGT ACTCATGGCACAGATGAGAGGCGCGCACGCGTAACTGTGCGCAGCTGCGG CCCGTGCGGCCGCGCTCGCGGGCGCACGAGACTGGCTCACGCCGGCCCGC CGCCTCCATACACGTGCGCGCCAGGCACGTGTCGCGCGCTCACCCACAGC AACGCCACGCATCACGCCACGCATCTGGTAATTCCAACCCTAAGCGCCTG CCGTGCCGCGCCGCGCTGGCGACGCCCCCCCCTGCGCAGGTGGTTCAACA GCAGCCCCGTGGGGCGCGCGCGCGCGGCCAGTTTGTCGTTGACGACTTCT TCGCCGCTTCACAGATGGTGTCTGGGCGCGCTGCCCGCCCTGACTGCTCG CCTCTCGCGCTCCCTTTTCAAAATGCCGCACGCCTATCCACATACTCTGA GCCATGGAAACGAATTGAAATATCGTAGAGCTCTAGGTGGCAAGGTATGA CTTAGCCGCCAGTGCCTTCAGCACCATGTTCGTTTGGCGGCAGCGCTGCC CCTGTCACACCGCGCGCCCGAGCTTCCGCCGTGCACTTCCCACCCTCACC GCCTTCCACCTGCGCCGTGCTCGCGACACCCCCCCCCGTGCGCGCAGGTG GTTCAACGGCAGCCCCGTGGGACGCGTGCGCGGGCAGTTCGTCGTCGACG GCTTCTTCGGCACGCCGCGCGGCAACTTCGGCGCGTTCCCCGTGCCGCGC GCCGCGCGCACGCTGCGCGTGTCAGCCTTCCCGTCCGCCATCGCGCGCAT CGACGCGGCGCACGAGAGCGAGGTCATCGCGCCCGACCTGCTCGGCGAGG GCGCGTTTGCCGCGGACATGCTCGTCATGGCGCTCAACCCTGGCTCCACG GAGCAGGTGCGTAGCTCGGCGCCTGTACGTACGAGCTTTGAGGTTTTCTG ACTTGATACATTTCGTTAGACGCGTGCTGCGCCGTTGCGTGAGCTTCGCA CAGGCGCGGGCACGCGTTGCATTGACACCACCTGGGCGGATATGCTCGCC ATGGCGCTGAATCCGGGCTCAACGGAGCAGGTGCGAGGCGACGCGCTGCT GCGGCGCTGCCGGCGCAACGCGTCGCGGCGCCTGTGCGACGCTGTGAGGT GTGCTTGATGCAGCGCATTTCGTGAGCGGCGTGGTGCAACGCGTGAGTGC CGCTCAGGCACCGAGACGCGTTGCTTGGCCATTGACTTGCTGTTGAGGCG CGACGTGCCTCGCGTCTAGGTGGGCGGGTGCCCCTGCCAGCGTCTTGCAT GTACGGGAGGGGCGTTGATGCGCGCGTGCGCGTGCGTCGATAGAGCGCAC CGTGGTACCTGTACGGCACTCAGAGCTTAGGGTTAGGATTAGGGTTGGGG TTGGGTCAGAGCGGCGTGTCTTTGTGGGGTTATGGTTGTGGTCAGGTCGC GTCTTGGTGCCCGTGGACTATACCTACGTGCATCTACGGTACAAGCGTCG CACGGGACTGCACTCGTCGGGAGCGTCATACCACGTCAGCGCCCGTCTTT TCCCCCCTTGTGTGCGCATCGCTCGTGCTACGCGGTGTTCGCACATTGGC GCCGCGCACGGTGATTCCCGCGCAGCGGCAGGTAGGCATGCAGCGCTGGT ACAGCGGCCGCTTCGAAGGTACGGGGTGGTGGGGGGCTATGTACGACATG CAGTGCGGCGTGCGTGGCTGCGCAGCTGATTGGCGGAAGAGGTTCGCACC GCGCAATACACGAGGGCTTGTTGGTGGGGTAAAAATCCCAAGGCCGCATC CCTGACCCTACCCCTAAGGTCCCACGGGAAGACTCCCCATCCCGCCAGAC ACATCCCGCGAGGCAGTAGGTTGTGCCTGGGGCAGAGTCGTTGAACTACA GCATGTGCATGGCGGGGGCGACCGCCTTGTGTCAAACAAACACTGGCGTG CCTCGTGATGCGGAGCCCTCCGCATCACGCGCTCCACTCTTGCTGCTGAG CGCTGCCGCTCTGCCGCACCACGCAGCACTCGCTCAAGCGCCAACAACGA GTGAAACGCACGCTGGCTCTCATCATGAGCTCCAGTCCCGGAGTACTGTA CCCCTCGAGCTGAGCGCTGCCTGTCCCCCTCCCCCTGACCTCCCCCCCCC CCCCCCCCCCCCTCATCCGCAGCTGACGAAGCTGTTTGAGGACGGGCGCA AGACGGGCGAGATCTGGCTGCAGAAGTACGGCGACATGTAC
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Coding sequence (CDS) from alignment at Contig_7:1614587..1618077-

>mRNA_2637 ID=mRNA_2637|Name=jgi.p|Trimin1|150974|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=750bp|location=Sequence derived from alignment at Contig_7:1614587..1618077- (Tribonema minus UTEX_B_3156 )
CAGTTTGGTCTCAGCTTTACTCCTGGCGGGCTCTTATTTCCGTACCAATT
AGGGATCTGCGATGCTTTTATGGAAGCGGGCTTTCTTACACCGGAGGTGC
CAATTGCTGGCTCTTCTGCTGGAGCTTTGACGACTGTGGTCGTTGGTGCG
GGCCTGGACCTGCGAGAAGTCCTTGAGGAGACGGAGGCGCTGTGCGAGGA
CTGCCGCACCGGCGGCACGCGCGGCCGGCTGCGCAGCGTGCTCGTCGCGT
CGCTCGCCAAGATGCTGCCAGAGGACGTGCACGAGCGCCTCAACGCGCGC
GCGGCGCCGGCAAGCGTGGGCTACACGGCGCTGCTGCCGCTGCCGAGCGG
CACGCTCGTCTCCGAATTCACCTCCAAGGAGGACGTCATCGGGTGCCTGC
TGGCGTCGTGCCACGTGCCGTGGTGGTTCAACGGCAGCCCCGTGGGACGC
GTGCGCGGGCAGTTCGTCGTCGACGGCTTCTTCGGCACGCCGCGCGGCAA
CTTCGGCGCGTTCCCCGTGCCGCGCGCCGCGCGCACGCTGCGCGTGTCAG
CCTTCCCGTCCGCCATCGCGCGCATCGACGCGGCGCACGAGAGCGAGGTC
ATCGCGCCCGACCTGCTCGGCGAGGGCGCGTTTGCCGCGGACATGCTCGT
CATGGCGCTCAACCCTGGCTCCACGGAGCAGCTGACGAAGCTGTTTGAGG
ACGGGCGCAAGACGGGCGAGATCTGGCTGCAGAAGTACGGCGACATGTAC
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