mRNA_2625 (mRNA) Tribonema minus UTEX_B_3156
Overview
Homology
BLAST of jgi.p|Trimin1|147707 vs. uniprot
Match: A0A835YLP6_9STRA (Dihydrofolate reductase-like domain-containing protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YLP6_9STRA) HSP 1 Score: 380 bits (977), Expect = 1.280e-133 Identity = 191/191 (100.00%), Postives = 191/191 (100.00%), Query Frame = 1 Query: 1 RPFVTLTYAQSLDGSIASADKRPVRISGRASRIMTHGLRSLHDGILVGGGTVRRDNPRLNVREWVGDSGDSQDPPPCPRPIVLSSQMGLPMAIKAHGAVIFTSFCRAETQSWLAARAHGGGGDASDCVIVHCATAAGGCCDLRDCLARLAAMGFASVMVEGGGRIIRAFLQAGLVDRLVVTVAPLMLGGYT 573 RPFVTLTYAQSLDGSIASADKRPVRISGRASRIMTHGLRSLHDGILVGGGTVRRDNPRLNVREWVGDSGDSQDPPPCPRPIVLSSQMGLPMAIKAHGAVIFTSFCRAETQSWLAARAHGGGGDASDCVIVHCATAAGGCCDLRDCLARLAAMGFASVMVEGGGRIIRAFLQAGLVDRLVVTVAPLMLGGYT Sbjct: 1 RPFVTLTYAQSLDGSIASADKRPVRISGRASRIMTHGLRSLHDGILVGGGTVRRDNPRLNVREWVGDSGDSQDPPPCPRPIVLSSQMGLPMAIKAHGAVIFTSFCRAETQSWLAARAHGGGGDASDCVIVHCATAAGGCCDLRDCLARLAAMGFASVMVEGGGRIIRAFLQAGLVDRLVVTVAPLMLGGYT 191
BLAST of jgi.p|Trimin1|147707 vs. uniprot
Match: UPI000D3C1FC3 (RibD family protein n=1 Tax=Saccharospirillum mangrovi TaxID=2161747 RepID=UPI000D3C1FC3) HSP 1 Score: 137 bits (345), Expect = 5.370e-37 Identity = 87/191 (45.55%), Postives = 110/191 (57.59%), Query Frame = 1 Query: 1 RPFVTLTYAQSLDGSIASADKRPVRISGRASRIMTHGLRSLHDGILVGGGTVRRDNPRLNVREWVGDSGDSQDPPPCPRPIVLSSQMGLPMAIKAHGAVIFTSFCR-AETQSWLAARAHGGGGDASDCVIVHCATAAGGCCDLRDCLARLAAMGFASVMVEGGGRIIRAFLQAGLVDRLVVTVAPLMLGGY 570 RP VTL+YAQS DGSI +A + +S AS MTH LRSLHDGILVG GTV DNPRLNVR+W G P+PIVL SQ+ LP + + C+ AE W+ G D DC ++ A G +L +A L G S+MVEGG +I AFL+A L D +++TVAP+ +GGY Sbjct: 25 RPHVTLSYAQSWDGSITTAPGETLALSSDASMQMTHQLRSLHDGILVGIGTVLADNPRLNVRKWTGKD---------PQPIVLDSQLRLPPS---------SQLCQSAERGCWVLTTE--GATDRDDCELIVVPGDADGQVNLHAAMAALYERGIRSLMVEGGASVITAFLRAALADAVILTVAPVFVGGY 195
BLAST of jgi.p|Trimin1|147707 vs. uniprot
Match: UPI000FDBF28B (RibD family protein n=1 Tax=Saccharospirillum alexandrii TaxID=2448477 RepID=UPI000FDBF28B) HSP 1 Score: 137 bits (344), Expect = 9.860e-37 Identity = 87/195 (44.62%), Postives = 110/195 (56.41%), Query Frame = 1 Query: 1 RPFVTLTYAQSLDGSIASADKRPVRISGRASRIMTHGLRSLHDGILVGGGTVRRDNPRLNVREWVGDSGDSQDPPPCPRPIVLSSQMGLPMAIKA-----HGAVIFTSFCRAETQSWLAARAHGGGGDASDCVIVHCATAAGGCCDLRDCLARLAAMGFASVMVEGGGRIIRAFLQAGLVDRLVVTVAPLMLGGY 570 RP VTL+YAQS DGSI +A + +S AS MTH LRSLHDGILVG GTV DNPRLNVR+W G P+PIVL SQ+ +P K HG + T+ A T D DC ++ A G +L + +A L G S+MVEGG +I AFL+ GL D +++TVAP+ +GGY Sbjct: 29 RPHVTLSYAQSWDGSITTAPGETMALSSDASMQMTHQLRSLHDGILVGIGTVLADNPRLNVRKWTGKD---------PQPIVLDSQLRMPPTCKLCQSAEHGCWVLTT-PEAAT-------------DRDDCELIVVPGDADGHVNLHEAMAVLHERGIRSLMVEGGASVITAFLRTGLADAVILTVAPVFVGGY 200
BLAST of jgi.p|Trimin1|147707 vs. uniprot
Match: A0A1G0J968_9GAMM (GTP cyclohydrolase n=1 Tax=Gammaproteobacteria bacterium RIFCSPLOWO2_02_FULL_57_10 TaxID=1798299 RepID=A0A1G0J968_9GAMM) HSP 1 Score: 136 bits (343), Expect = 1.070e-36 Identity = 85/191 (44.50%), Postives = 108/191 (56.54%), Query Frame = 1 Query: 1 RPFVTLTYAQSLDGSIASADKRPVRISGRASRIMTHGLRSLHDGILVGGGTVRRDNPRLNVREWVGDSGDSQDPPPCPRPIVLSSQMGLPMAIKAHGAVIFTSFCR-AETQSWLAARAHGGGGDASDCVIVHCATAAGGCCDLRDCLARLAAMGFASVMVEGGGRIIRAFLQAGLVDRLVVTVAPLMLGGY 570 RPFVTL+YAQSLDGSI + +SG S +TH LRSLHDGILVG GTV D+P+LNVR+W G P P+PIVL S + +P + C A+ W+ H + SD I+ A A G L + L L G S+MVEGG +I AFL+ LVD LV+T+AP ++GGY Sbjct: 23 RPFVTLSYAQSLDGSITLRAGESLGLSGEESTRLTHHLRSLHDGILVGIGTVLADDPQLNVRQWTG---------PSPQPIVLDSHLRIPADAR---------LCHIADKHCWVLTSRHSNSREQSDLDIITLAGDAEGRVCLHEALRELKRRGINSLMVEGGANVITAFLKEQLVDALVLTIAPTVVGGY 195
BLAST of jgi.p|Trimin1|147707 vs. uniprot
Match: UPI0016520CC1 (RibD family protein n=1 Tax=Saccharophagus sp. K07 TaxID=2283636 RepID=UPI0016520CC1) HSP 1 Score: 133 bits (334), Expect = 2.040e-35 Identity = 85/191 (44.50%), Postives = 110/191 (57.59%), Query Frame = 1 Query: 1 RPFVTLTYAQSLDGSIASADKRPVRISGRASRIMTHGLRSLHDGILVGGGTVRRDNPRLNVREWVGDSGDSQDPPPCPRPIVLSSQMGLPMAIK-AHGAVIFTSFCRAETQSWLAARAHGGGGDASDCVIVHCATAAGGCCDLRDCLARLAAMGFASVMVEGGGRIIRAFLQAGLVDRLVVTVAPLMLGGY 570 RPFVTL+YAQSLDGSIA +D++P+ +SG S +TH LRSLHDGILVG GTV D+P+L VR W G++ P+PI+L S+ +PMA + H R E W+ + A G C L+ L L G +MVEGG +II +FLQAGLVD LV+T+ P +GGY Sbjct: 23 RPFVTLSYAQSLDGSIARSDRKPLILSGEESMRITHQLRSLHDGILVGIGTVLTDDPQLTVRHWQGEN---------PQPIILDSRCRIPMAARLCH---------RTEKNCWVLTTCSDMKSFDGVEIYQMQANEEGRVC-LKHALEFLYERGIKRLMVEGGAQIITSFLQAGLVDALVLTICPRFIGGY 194
BLAST of jgi.p|Trimin1|147707 vs. uniprot
Match: UPI000D37C1DD (RibD family protein n=1 Tax=Saccharospirillum sp. MSK14-1 TaxID=1897632 RepID=UPI000D37C1DD) HSP 1 Score: 133 bits (334), Expect = 2.790e-35 Identity = 84/191 (43.98%), Postives = 109/191 (57.07%), Query Frame = 1 Query: 1 RPFVTLTYAQSLDGSIASADKRPVRISGRASRIMTHGLRSLHDGILVGGGTVRRDNPRLNVREWVGDSGDSQDPPPCPRPIVLSSQMGLPMAIKAHGAVIFTSFC-RAETQSWLAARAHGGGGDASDCVIVHCATAAGGCCDLRDCLARLAAMGFASVMVEGGGRIIRAFLQAGLVDRLVVTVAPLMLGGY 570 RP VTL+YAQS DGSI + + +S AS MTH LRSLHDGILVG GTV DNPRLNVR+W G+ P+PIVL SQ+ +P + K C +AE W+ D DC ++ A G +L + L G S+MVEGG +I AFL++GL D +++TVAP+ +GGY Sbjct: 25 RPHVTLSYAQSWDGSITTVPGETMALSSDASMQMTHQLRSLHDGILVGIGTVLADNPRLNVRKWTGND---------PQPIVLDSQLRMPPSCK---------LCQKAERGCWVLTTPEAQT-DRDDCELIVVPGDADGHVNLHAAMDVLYERGIRSLMVEGGASVITAFLRSGLADAVILTVAPMFVGGY 196
BLAST of jgi.p|Trimin1|147707 vs. uniprot
Match: UPI0004644D2B (RibD family protein n=1 Tax=Marinimicrobium sp. LS-A18 TaxID=1381596 RepID=UPI0004644D2B) HSP 1 Score: 131 bits (330), Expect = 1.830e-34 Identity = 84/195 (43.08%), Postives = 108/195 (55.38%), Query Frame = 1 Query: 1 RPFVTLTYAQSLDGSIASADKRPVRISGRASRIMTHGLRSLHDGILVGGGTVRRDNPRLNVREWVGDSGDSQDPPPCPRPIVLSSQMGLPMAIKA-----HGAVIFTSFCRAETQSWLAARAHGGGGDASDCVIVHCATAAGGCCDLRDCLARLAAMGFASVMVEGGGRIIRAFLQAGLVDRLVVTVAPLMLGGY 570 RP VTLTYAQS DGSIAS P+ +SG S MTH LRSLHDGILVG GTV D+PRLNVR+W G P+PIVL S + +P + + HG + T+ A+ + DC + G +L + L L G ++MVEGG +I AFL+ GL D +V+TVAP+ +GGY Sbjct: 29 RPHVTLTYAQSWDGSIASDPGTPMALSGDESLRMTHQLRSLHDGILVGIGTVLADDPRLNVRKWSGRD---------PQPIVLDSHLRMPPSSRLCQRGDHGCWVLTTVASADNRH--------------DCEPIVVPGDEEGHVNLHEALQLLYQRGINTLMVEGGASVITAFLREGLADAVVLTVAPVFIGGY 200
BLAST of jgi.p|Trimin1|147707 vs. uniprot
Match: A0A177M9Q7_METMH (GTP cyclohydrolase n=9 Tax=Methylomonas TaxID=416 RepID=A0A177M9Q7_METMH) HSP 1 Score: 130 bits (328), Expect = 1.940e-34 Identity = 82/191 (42.93%), Postives = 110/191 (57.59%), Query Frame = 1 Query: 1 RPFVTLTYAQSLDGSIASADKRPVRISGRASRIMTHGLRSLHDGILVGGGTVRRDNPRLNVREWVGDSGDSQDPPPCPRPIVLSSQMGLPMAIKAHGAVIFTSFCRAETQS-WLAARAHGGGGDASDCVIVHCATAAGGCCDLRDCLARLAAMGFASVMVEGGGRIIRAFLQAGLVDRLVVTVAPLMLGGY 570 RPFVTL+YAQS DGSI + + +SG SR +TH LRSLHDGILVG GTV D+P+L VREW GD+ P+PIVL SQ+ +P + C+ + ++ W+ R + I+ G DL L RL G ++MVEGG ++I AFL+A L D LV+T+AP ++GGY Sbjct: 23 RPFVTLSYAQSWDGSITTRAGETLGLSGNESRRLTHQLRSLHDGILVGIGTVLTDDPQLTVREWRGDN---------PQPIVLDSQLRMPPTAR---------LCQRDDKNCWVLTRLKDDSEFDGNAEIITLEGNDDGRVDLSKALQRLWEKGIRTLMVEGGSQVITAFLKAQLADALVLTIAPTLVGGY 195
BLAST of jgi.p|Trimin1|147707 vs. uniprot
Match: A0A177NIE6_9GAMM (GTP cyclohydrolase n=1 Tax=Methylomonas koyamae TaxID=702114 RepID=A0A177NIE6_9GAMM) HSP 1 Score: 129 bits (325), Expect = 5.310e-34 Identity = 86/190 (45.26%), Postives = 109/190 (57.37%), Query Frame = 1 Query: 1 RPFVTLTYAQSLDGSIASADKRPVRISGRASRIMTHGLRSLHDGILVGGGTVRRDNPRLNVREWVGDSGDSQDPPPCPRPIVLSSQMGLPMAIKAHGAVIFTSFC-RAETQSWLAARAHGGGGDASDCVIVHCATAAGGCCDLRDCLARLAAMGFASVMVEGGGRIIRAFLQAGLVDRLVVTVAPLMLGG 567 RPFVTL+YAQS DGSI + + +SG S +TH LRSLHDGILVG GTV D+P+L VREW G + P+PIVL SQ+ +P A + C RA+ W+ R G A + I+ G DL + L L G ++MVEGG RII AFL+A L D LV+TVAP ++GG Sbjct: 23 RPFVTLSYAQSWDGSITTRRGESLGLSGSESLRLTHQLRSLHDGILVGIGTVLADDPQLTVREWRGAN---------PQPIVLDSQLRMPPAAR---------LCQRADKTCWVLTRRSGPRPFAGNAEIIAMERDDDGRVDLAEALQVLWQKGIRTLMVEGGSRIITAFLRAQLADALVLTVAPTLVGG 194
BLAST of jgi.p|Trimin1|147707 vs. uniprot
Match: A0A2T6FMN6_9GAMM (GTP cyclohydrolase n=2 Tax=Cellvibrio TaxID=10 RepID=A0A2T6FMN6_9GAMM) HSP 1 Score: 129 bits (325), Expect = 5.310e-34 Identity = 80/190 (42.11%), Postives = 105/190 (55.26%), Query Frame = 1 Query: 1 RPFVTLTYAQSLDGSIASADKRPVRISGRASRIMTHGLRSLHDGILVGGGTVRRDNPRLNVREWVGDSGDSQDPPPCPRPIVLSSQMGLPMAIKAHGAVIFTSFCRAETQSWLAARAHGGGGDASDCVIVHCATAAGGCCDLRDCLARLAAMGFASVMVEGGGRIIRAFLQAGLVDRLVVTVAPLMLGGY 570 RPFVTL+YAQSLDGSIA P+ +SG S +TH LRS+HDGILVG GTV D+P+LNVR W G + P+PIVL SQ+ +P + +E W+ + I + G L++ LA L G +MVEGG +I AFL+A LVD +V+TV P ++GGY Sbjct: 23 RPFVTLSYAQSLDGSIALRSSEPMALSGNESLRLTHQLRSMHDGILVGIGTVLSDDPQLNVRHWTGKN---------PQPIVLDSQLRMPSDARLRQC--------SEKPCWILTTQEREWPNQGGIEICQSQPGSDGRVCLKNALALLYEKGIRHLMVEGGAHVITAFLKAQLVDAVVITVVPRIVGGY 195 The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|147707 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
This mRNA is a part of the following gene feature(s):
The following exon feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
spliced messenger RNA >mRNA_2625 ID=mRNA_2625|Name=jgi.p|Trimin1|147707|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=573bp|location=Sequence derived from alignment at Contig_7:1428410..1429033+ (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon. CGCCCCTTCGTCACTCTCACCTACGCCCAGAGCCTGGATGGTAGCATTGCback to top protein sequence of jgi.p|Trimin1|147707 >Trimin1|147707|gw1.7.239.1 ID=Trimin1|147707|gw1.7.239.1|Name=jgi.p|Trimin1|147707|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=191bp RPFVTLTYAQSLDGSIASADKRPVRISGRASRIMTHGLRSLHDGILVGGGback to top mRNA from alignment at Contig_7:1428410..1429033+ Legend: exonpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_2625 ID=mRNA_2625|Name=jgi.p|Trimin1|147707|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=624bp|location=Sequence derived from alignment at Contig_7:1428410..1429033+ (Tribonema minus UTEX_B_3156 )back to top Coding sequence (CDS) from alignment at Contig_7:1428410..1429033+ >mRNA_2625 ID=mRNA_2625|Name=jgi.p|Trimin1|147707|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=573bp|location=Sequence derived from alignment at Contig_7:1428410..1429033+ (Tribonema minus UTEX_B_3156 )back to top |