mRNA_2602 (mRNA) Tribonema minus UTEX_B_3156

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
Namejgi.p|Trimin1|148391
Unique NamemRNA_2602
TypemRNA
OrganismTribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Homology
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BLAST of jgi.p|Trimin1|148391 vs. uniprot
Match: A0A836CA34_9STRA (PX domain-containing protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CA34_9STRA)

HSP 1 Score: 145 bits (365), Expect = 3.180e-44
Identity = 68/68 (100.00%), Postives = 68/68 (100.00%), Query Frame = 1 
Query:    1 RRYSDFEALRDAVRSVHRCVSDFDFPHKSKFNTFADWTKERRRTGFEDFMMLLLGFTTRPAEVDAFLE 204
            RRYSDFEALRDAVRSVHRCVSDFDFPHKSKFNTFADWTKERRRTGFEDFMMLLLGFTTRPAEVDAFLE
Sbjct:    1 RRYSDFEALRDAVRSVHRCVSDFDFPHKSKFNTFADWTKERRRTGFEDFMMLLLGFTTRPAEVDAFLE 68
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BLAST of jgi.p|Trimin1|148391 vs. uniprot
Match: D7FVD9_ECTSI (Similar to Serine/threonine-protein kinase Sgk3 (Serum/glucocorticoid-regulated kinase 3) (Serum/glucocorticoid-regulated kinase-like) isoform 3 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FVD9_ECTSI)

HSP 1 Score: 83.6 bits (205), Expect = 1.860e-17
Identity = 38/67 (56.72%), Postives = 48/67 (71.64%), Query Frame = 1 
Query:    1 RRYSDFEALRDAVRSVHRCVSDFDFPHKSKFNTFADWTKERRRTGFEDFMMLLLGFTTRPAEVDAFL 201
            +RYS F+  R ++R  H+ V  F FPHKSKFNTFA+ TKERRRTGF++F+ L+     RP EVD FL
Sbjct:  153 KRYSQFDQFRMSLRKQHKEVGSFRFPHKSKFNTFAEHTKERRRTGFDEFLRLVANLHPRPEEVDVFL 219
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BLAST of jgi.p|Trimin1|148391 vs. uniprot
Match: A0A7S3NQA4_9STRA (Hypothetical protein n=1 Tax=Aureoumbra lagunensis TaxID=44058 RepID=A0A7S3NQA4_9STRA)

HSP 1 Score: 56.6 bits (135), Expect = 7.470e-8
Identity = 28/56 (50.00%), Postives = 37/56 (66.07%), Query Frame = 1 
Query:    1 RRYSDFEALRDAVR--SVHRCVSDFDFPHKSKFNTFADWTKERRRTGFEDFMMLLL 162
            +RYSD       V   + H  +  F+FPHKS FNT A++TKERRR+GFE++  LLL
Sbjct:   49 KRYSDVLRFHKEVLKGASHPALEGFNFPHKSMFNTSAEFTKERRRSGFEEYFELLL 104
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BLAST of jgi.p|Trimin1|148391 vs. uniprot
Match: A0A7S2CPX7_9STRA (Hypothetical protein n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2CPX7_9STRA)

HSP 1 Score: 56.2 bits (134), Expect = 1.360e-7
Identity = 26/54 (48.15%), Postives = 38/54 (70.37%), Query Frame = 1 
Query:    1 RRYSDFEALRDAVRSVHRCVSDFDFPHKSKFNTFADWTKERRRTGFEDFMMLLL 162
            +RY+D   +   +   +  +S + FP KS FNTFA++T+ERRR+GFED+M LLL
Sbjct:   50 KRYTDVFDMHIRLFDTNPQISGYRFPKKSVFNTFAEFTRERRRSGFEDYMGLLL 103
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BLAST of jgi.p|Trimin1|148391 vs. uniprot
Match: A0A7S3ZWJ6_9STRA (Hypothetical protein n=1 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A7S3ZWJ6_9STRA)

HSP 1 Score: 52.4 bits (124), Expect = 2.300e-6
Identity = 31/71 (43.66%), Postives = 40/71 (56.34%), Query Frame = 1 
Query:    1 RRYSDFEALRDAV--RSVHRCVSDFDFPHKSKFNTFADWTKERRRTGFEDFMMLLLGFTTRPAE-VDAFLE 204
            RRY D       +   + H  +  FDFPHKS  NT A++TKERRR+GFE +  LLL      A  V+ FL+
Sbjct:   37 RRYRDVLRFHGTLCRAAPHPKLEQFDFPHKSILNTNAEFTKERRRSGFEAYFALLLSLGPNYAPFVETFLK 107
The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|148391 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 5
Match NameE-valueIdentityDescription
A0A836CA34_9STRA3.180e-44100.00PX domain-containing protein (Fragment) n=1 Tax=Tr... [more]
D7FVD9_ECTSI1.860e-1756.72Similar to Serine/threonine-protein kinase Sgk3 (S... [more]
A0A7S3NQA4_9STRA7.470e-850.00Hypothetical protein n=1 Tax=Aureoumbra lagunensis... [more]
A0A7S2CPX7_9STRA1.360e-748.15Hypothetical protein n=1 Tax=Dictyocha speculum Ta... [more]
A0A7S3ZWJ6_9STRA2.300e-643.66Hypothetical protein n=1 Tax=Pelagomonas calceolat... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Contig_7contigContig_7:1164244..1164447 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Tribonema minus UTEX_B_31562021-06-17
Properties
Property NameValue
ProteomeIdTrimin1|148391|gw1.7.246.1
BRITEko00000
KEGG koko:K17931,ko:K17932
GOsGO:0003674,GO:0005488,GO:0005543,GO:0005546,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005768,GO:0005769,GO:0008289,GO:0010008,GO:0012505,GO:0016020,GO:0031090,GO:0031410,GO:0031901,GO:0031982,GO:0032266,GO:0035091,GO:0043167,GO:0043168,GO:0043226,GO:0043227,GO:0043229,GO:0044422,GO:0044424,GO:0044433,GO:0044440,GO:0044444,GO:0044446,GO:0044464,GO:0097708,GO:0098588,GO:0098805,GO:1901981,GO:1902936
Preferred nameSNX21
DescriptionSorting nexin family member 21
COG categoryDUZ
Max annot lvl33208|Metazoa
EggNOG OGsKOG2101@1|root,KOG2101@2759|Eukaryota,38WMK@33154|Opisthokonta,3BF0B@33208|Metazoa
Evalue0.000992
Seed ortholog10228.TriadP55582
Hectar predicted targeting categoryother localisation
TranscriptId148713
TrackFilteredModels1
ProteinId148391
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|148391gene_2602Tribonema minus UTEX_B_3156 geneContig_7 1164244..1164447 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
exon_2602_1exon_2602_1Tribonema minus UTEX_B_3156 exonContig_7 1164244..1164447 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
CDS_2602CDS_2602Tribonema minus UTEX_B_3156 CDSContig_7 1164244..1164447 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|148391Trimin1|148391|gw1.7.246.1Tribonema minus UTEX_B_3156 polypeptideContig_7 1164244..1164447 -


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>mRNA_2602 ID=mRNA_2602|Name=jgi.p|Trimin1|148391|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=204bp|location=Sequence derived from alignment at Contig_7:1164244..1164447- (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon.  
CGCAGGTACAGCGACTTTGAGGCGCTGCGCGACGCGGTGCGCAGCGTGCA
CCGCTGCGTCTCCGACTTCGACTTCCCGCACAAGTCCAAGTTCAACACGT
TCGCGGACTGGACCAAGGAGCGGCGCCGCACGGGGTTCGAGGACTTCATG
ATGCTGCTGCTCGGCTTCACGACGCGGCCGGCGGAGGTGGACGCTTTCCT
GGAG
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protein sequence of jgi.p|Trimin1|148391

>Trimin1|148391|gw1.7.246.1 ID=Trimin1|148391|gw1.7.246.1|Name=jgi.p|Trimin1|148391|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=68bp
RRYSDFEALRDAVRSVHRCVSDFDFPHKSKFNTFADWTKERRRTGFEDFM
MLLLGFTTRPAEVDAFLE
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mRNA from alignment at Contig_7:1164244..1164447-

Legend: exonpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_2602 ID=mRNA_2602|Name=jgi.p|Trimin1|148391|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=204bp|location=Sequence derived from alignment at Contig_7:1164244..1164447- (Tribonema minus UTEX_B_3156 )
CGCAGGTACAGCGACTTTGAGGCGCTGCGCGACGCGGTGCGCAGCGTGCA
CCGCTGCGTCTCCGACTTCGACTTCCCGCACAAGTCCAAGTTCAACACGT
TCGCGGACTGGACCAAGGAGCGGCGCCGCACGGGGTTCGAGGACTTCATG
ATGCTGCTGCTCGGCTTCACGACGCGGCCGGCGGAGGTGGACGCTTTCCT
GGAG
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Coding sequence (CDS) from alignment at Contig_7:1164244..1164447-

>mRNA_2602 ID=mRNA_2602|Name=jgi.p|Trimin1|148391|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=204bp|location=Sequence derived from alignment at Contig_7:1164244..1164447- (Tribonema minus UTEX_B_3156 )
CGCAGGTACAGCGACTTTGAGGCGCTGCGCGACGCGGTGCGCAGCGTGCA
CCGCTGCGTCTCCGACTTCGACTTCCCGCACAAGTCCAAGTTCAACACGT
TCGCGGACTGGACCAAGGAGCGGCGCCGCACGGGGTTCGAGGACTTCATG
ATGCTGCTGCTCGGCTTCACGACGCGGCCGGCGGAGGTGGACGCTTTCCT
GGAG
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