mRNA_2544 (mRNA) Tribonema minus UTEX_B_3156

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
Namejgi.p|Trimin1|158854
Unique NamemRNA_2544
TypemRNA
OrganismTribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Homology
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BLAST of jgi.p|Trimin1|158854 vs. uniprot
Match: A0A835YMV6_9STRA (Peptidase_M14 domain-containing protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YMV6_9STRA)

HSP 1 Score: 449 bits (1155), Expect = 4.560e-158
Identity = 272/272 (100.00%), Postives = 272/272 (100.00%), Query Frame = 1 
Query:    1 MKPLVYSVAATTAAGSAPHAHHRSTGWHRSGEQVRYFCSSGSGSGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAPRARYTLTFVHTFAHGGDTVYFAHSLPYTYARLRGALAALGRDAARAAVARRTTLCRTLAGNDVPLVTVTAXXXXXXXXXXXLARRPAVVLTARVHPGESNASWIMDGLLRFLTGAHPAAAALRERFVFKVIPMLNPDGVINGNHRASLAGCDLNRRWAAPKAHLHPEIYHARALIQRLHAQRGVLLVCDIHAHSR 816
            MKPLVYSVAATTAAGSAPHAHHRSTGWHRSGEQVRYFCSSGSGSGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAPRARYTLTFVHTFAHGGDTVYFAHSLPYTYARLRGALAALGRDAARAAVARRTTLCRTLAGNDVPLVTVTAXXXXXXXXXXXLARRPAVVLTARVHPGESNASWIMDGLLRFLTGAHPAAAALRERFVFKVIPMLNPDGVINGNHRASLAGCDLNRRWAAPKAHLHPEIYHARALIQRLHAQRGVLLVCDIHAHSR
Sbjct:    1 MKPLVYSVAATTAAGSAPHAHHRSTGWHRSGEQVRYFCSSGSGSGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAPRARYTLTFVHTFAHGGDTVYFAHSLPYTYARLRGALAALGRDAARAAVARRTTLCRTLAGNDVPLVTVTAXXXXXXXXXXXLARRPAVVLTARVHPGESNASWIMDGLLRFLTGAHPAAAALRERFVFKVIPMLNPDGVINGNHRASLAGCDLNRRWAAPKAHLHPEIYHARALIQRLHAQRGVLLVCDIHAHSR 272
[Close]
BLAST of jgi.p|Trimin1|158854 vs. uniprot
Match: UPI0010FB2B18 (cytosolic carboxypeptidase 1-like n=1 Tax=Labrus bergylta TaxID=56723 RepID=UPI0010FB2B18)

HSP 1 Score: 200 bits (508), Expect = 6.520e-58
Identity = 99/197 (50.25%), Postives = 128/197 (64.97%), Query Frame = 1 
Query:  232 RARYTLTFVHTFAHGGDTVYFAHSLPYTYARLRGALAALGRDAARAAVARRTTLCRTLAGNDVPLVTVTAXXXXXXXXXXXLAR-RPAVVLTARVHPGESNASWIMDGLLRFLTGAHPAAAALRERFVFKVIPMLNPDGVINGNHRASLAGCDLNRRWAAPKAHLHPEIYHARALIQRL-HAQRGVLLVCDIHAHSR 816
            ++ YT+TF  +F+H  D  YFA+  PYTY+ L+  L+ L          R+  LC TL GN  PL+T+TA             R RP + L+ARVHPGE+NASW+M G L FL G  P AA+LR+ ++FK++PMLNPDGVINGNHR SL+G DLNR+W +P   LHP IYH ++L+Q L H QR  L+ CD H HSR
Sbjct:  100 KSYYTMTFTTSFSHKDDVCYFAYHYPYTYSTLKMHLSKLEALRTPQIYLRQDVLCETLGGNKCPLLTITAMPESNSNDHICQFRNRPLIFLSARVHPGETNASWVMKGTLEFLMGTSPLAASLRDAYIFKIVPMLNPDGVINGNHRCSLSGEDLNRQWQSPNPELHPTIYHTKSLLQYLAHIQRAPLVFCDYHGHSR 296
[Close]
BLAST of jgi.p|Trimin1|158854 vs. uniprot
Match: A0A7J5YNR4_DISMA (Uncharacterized protein n=1 Tax=Dissostichus mawsoni TaxID=36200 RepID=A0A7J5YNR4_DISMA)

HSP 1 Score: 198 bits (503), Expect = 2.660e-56
Identity = 98/197 (49.75%), Postives = 127/197 (64.47%), Query Frame = 1 
Query:  232 RARYTLTFVHTFAHGGDTVYFAHSLPYTYARLRGALAALGRDAARAAVARRTTLCRTLAGNDVPLVTVTAXXXXXXXXXXXLAR-RPAVVLTARVHPGESNASWIMDGLLRFLTGAHPAAAALRERFVFKVIPMLNPDGVINGNHRASLAGCDLNRRWAAPKAHLHPEIYHARALIQRL-HAQRGVLLVCDIHAHSR 816
            ++ YT+TF  +F+H  D  YFA+  PYTY+ L+  L+ L          R+  LC TL GN  PL+T+TA             R RP + L+ARVHPGE+NASW+M G L FL G+ P A +LRE ++FK++PMLNPDGV+NGNHR SL+G DLNR+W  P   LHP IYH ++L+Q L H QR  L+ CD H HSR
Sbjct:  193 KSYYTMTFSTSFSHKDDVCYFAYHYPYTYSTLKMHLSKLEAYRTPHIYLRQDVLCETLGGNSCPLLTITAMPESNSNDHICQFRNRPLIFLSARVHPGETNASWVMKGTLEFLMGSSPLAGSLRESYIFKIVPMLNPDGVVNGNHRCSLSGEDLNRQWQNPNLELHPTIYHTKSLLQYLAHIQRAPLVYCDYHGHSR 389
[Close]
BLAST of jgi.p|Trimin1|158854 vs. uniprot
Match: A0A1A8EZ81_9TELE (ATP/GTP binding protein 1 (Fragment) n=1 Tax=Nothobranchius korthausae TaxID=1143690 RepID=A0A1A8EZ81_9TELE)

HSP 1 Score: 199 bits (506), Expect = 3.310e-56
Identity = 100/197 (50.76%), Postives = 129/197 (65.48%), Query Frame = 1 
Query:  232 RARYTLTFVHTFAHGGDTVYFAHSLPYTYARLRGALAALGRDAARAAVARRTTLCRTLAGNDVPLVTVTAXXXXXXXXXXXLAR-RPAVVLTARVHPGESNASWIMDGLLRFLTGAHPAAAALRERFVFKVIPMLNPDGVINGNHRASLAGCDLNRRWAAPKAHLHPEIYHARALIQRL-HAQRGVLLVCDIHAHSR 816
            ++ YTLTF  TF+H  D  YFA+  PYTY+ L+  L+ L          R+  LC TL+GN  PL+T+TA             R RP + L+ARVHPGE+NASW+M G L FL G+ P AA+LRE ++FK++PMLNPDGV+NGNHR SL+G DLNR+W  P   LHP IYH ++L+Q L + QR  L+ CD H HSR
Sbjct:  204 KSYYTLTFSITFSHKDDVCYFAYHYPYTYSSLKMHLSKLEDLKTPRIYLRQDVLCETLSGNSCPLLTITAMPESNSNDHICQFRNRPLIFLSARVHPGETNASWVMKGTLEFLMGSSPLAASLREAYIFKIVPMLNPDGVVNGNHRCSLSGEDLNRQWLNPNPELHPTIYHTKSLLQYLAYIQRAPLVFCDYHGHSR 400
[Close]
BLAST of jgi.p|Trimin1|158854 vs. uniprot
Match: A0A8J5XD53_DIALT (Uncharacterized protein n=1 Tax=Diacronema lutheri TaxID=2081491 RepID=A0A8J5XD53_DIALT)

HSP 1 Score: 199 bits (507), Expect = 4.470e-56
Identity = 103/195 (52.82%), Postives = 129/195 (66.15%), Query Frame = 1 
Query:  232 RARYTLTFVHTFAHGGDTVYFAHSLPYTYARLRGALAALGRDAARAAVARRTTLCRTLAGNDVPLVTVTAXXXXXXXXXXXLARRPAVVLTARVHPGESNASWIMDGLLRFLTGAHPAAAALRERFVFKVIPMLNPDGVINGNHRASLAGCDLNRRWAAPKAHLHPEIYHARALIQRLHAQRGVLLVCDIHAHSR 816
            +A +TLTF   FAH  D  YFA   PY+Y  L   L+AL  D ARA   +R TLCRTLAGNDVP++TVT            L +R  +VLTARVHPGE  +SW+M G++ FLTG    A  LR+ F+FK++PMLNPDGVI GNHR+SL+G DLNR W  P   LHP IY  + L++ L A+R V+L  D+HAHS+
Sbjct:  230 QALHTLTFTVEFAHAADVCYFAFGYPYSYTTLCAHLSALEADPARAKRFKRRTLCRTLAGNDVPVLTVTTFGAVTATA---LEQRRGIVLTARVHPGEVGSSWMMLGMILFLTGPSIEAKMLRDNFIFKIVPMLNPDGVIVGNHRSSLSGADLNRHWREPSRLLHPVIYAIKELVRALTAERDVVLFADLHAHSK 421
[Close]
BLAST of jgi.p|Trimin1|158854 vs. uniprot
Match: A0A8D3BZV1_SCOMX (Tubulin-glutamate carboxypeptidase n=1 Tax=Scophthalmus maximus TaxID=52904 RepID=A0A8D3BZV1_SCOMX)

HSP 1 Score: 202 bits (514), Expect = 6.100e-56
Identity = 102/197 (51.78%), Postives = 126/197 (63.96%), Query Frame = 1 
Query:  232 RARYTLTFVHTFAHGGDTVYFAHSLPYTYARLRGALAALGRDAARAAVARRTTLCRTLAGNDVPLVTVTAXXXXXXXXXXXLAR-RPAVVLTARVHPGESNASWIMDGLLRFLTGAHPAAAALRERFVFKVIPMLNPDGVINGNHRASLAGCDLNRRWAAPKAHLHPEIYHARALIQRL-HAQRGVLLVCDIHAHSR 816
            ++ YTLTF  TF+H  D  YFA+  PYTY+ L+  L+ L          R+  LC TL GN  PL+T+TA             R RP + LTARVHPGE+NASW+M G L FL G  P AA LRE ++FK++PMLNPDGV+NGNHR SL+G DLNR+W  P   LHP IYH ++L+Q L H QR  L+ CD H HSR
Sbjct:  565 KSYYTLTFSKTFSHKDDVCYFAYHYPYTYSTLKMHLSKLEALKTPQIYIRQDVLCETLGGNSCPLLTITAMPESNSNDHICQFRNRPLIFLTARVHPGETNASWVMKGTLEFLMGTSPLAANLREAYIFKIVPMLNPDGVVNGNHRCSLSGEDLNRQWQNPNPELHPTIYHTKSLLQYLAHIQRAPLVFCDYHGHSR 761
[Close]
BLAST of jgi.p|Trimin1|158854 vs. uniprot
Match: A0A3P8VZ54_CYNSE (Tubulin-glutamate carboxypeptidase n=3 Tax=Cynoglossus semilaevis TaxID=244447 RepID=A0A3P8VZ54_CYNSE)

HSP 1 Score: 203 bits (517), Expect = 7.140e-56
Identity = 103/197 (52.28%), Postives = 127/197 (64.47%), Query Frame = 1 
Query:  232 RARYTLTFVHTFAHGGDTVYFAHSLPYTYARLRGALAALGRDAARAAVARRTTLCRTLAGNDVPLVTVTAXXXXXXXXXXXLAR-RPAVVLTARVHPGESNASWIMDGLLRFLTGAHPAAAALRERFVFKVIPMLNPDGVINGNHRASLAGCDLNRRWAAPKAHLHPEIYHARALIQRL-HAQRGVLLVCDIHAHSR 816
            ++ YTLTF  TF+H  D  YFA+  PYTY+ L+  LA L          R+  LC TL GN  PL+T+TA             R RP + L+ARVHPGE+NASW+M G L FL G  P AAALRE ++FK++PMLNPDGV+NGNHR SL+G DLNR+W  P   LHP IYH ++L+Q L H QR  L+ CD H HSR
Sbjct:  858 KSYYTLTFSTTFSHKDDVCYFAYHYPYTYSTLKMHLAKLEELRTSHIYLRQDILCETLGGNSCPLLTITAMPESNSNDHICQFRNRPIIFLSARVHPGETNASWVMKGTLEFLMGTSPMAAALREAYIFKIVPMLNPDGVVNGNHRCSLSGEDLNRQWQNPNPELHPTIYHTKSLLQYLAHIQRAPLVSCDYHGHSR 1054
[Close]
BLAST of jgi.p|Trimin1|158854 vs. uniprot
Match: A0A8D3BBH4_SCOMX (Tubulin-glutamate carboxypeptidase n=1 Tax=Scophthalmus maximus TaxID=52904 RepID=A0A8D3BBH4_SCOMX)

HSP 1 Score: 202 bits (514), Expect = 7.250e-56
Identity = 102/197 (51.78%), Postives = 126/197 (63.96%), Query Frame = 1 
Query:  232 RARYTLTFVHTFAHGGDTVYFAHSLPYTYARLRGALAALGRDAARAAVARRTTLCRTLAGNDVPLVTVTAXXXXXXXXXXXLAR-RPAVVLTARVHPGESNASWIMDGLLRFLTGAHPAAAALRERFVFKVIPMLNPDGVINGNHRASLAGCDLNRRWAAPKAHLHPEIYHARALIQRL-HAQRGVLLVCDIHAHSR 816
            ++ YTLTF  TF+H  D  YFA+  PYTY+ L+  L+ L          R+  LC TL GN  PL+T+TA             R RP + LTARVHPGE+NASW+M G L FL G  P AA LRE ++FK++PMLNPDGV+NGNHR SL+G DLNR+W  P   LHP IYH ++L+Q L H QR  L+ CD H HSR
Sbjct:  546 KSYYTLTFSKTFSHKDDVCYFAYHYPYTYSTLKMHLSKLEALKTPQIYIRQDVLCETLGGNSCPLLTITAMPESNSNDHICQFRNRPLIFLTARVHPGETNASWVMKGTLEFLMGTSPLAANLREAYIFKIVPMLNPDGVVNGNHRCSLSGEDLNRQWQNPNPELHPTIYHTKSLLQYLAHIQRAPLVFCDYHGHSR 742
[Close]
BLAST of jgi.p|Trimin1|158854 vs. uniprot
Match: A0A8D3CVQ6_SCOMX (Tubulin-glutamate carboxypeptidase n=1 Tax=Scophthalmus maximus TaxID=52904 RepID=A0A8D3CVQ6_SCOMX)

HSP 1 Score: 202 bits (514), Expect = 1.590e-55
Identity = 102/197 (51.78%), Postives = 126/197 (63.96%), Query Frame = 1 
Query:  232 RARYTLTFVHTFAHGGDTVYFAHSLPYTYARLRGALAALGRDAARAAVARRTTLCRTLAGNDVPLVTVTAXXXXXXXXXXXLAR-RPAVVLTARVHPGESNASWIMDGLLRFLTGAHPAAAALRERFVFKVIPMLNPDGVINGNHRASLAGCDLNRRWAAPKAHLHPEIYHARALIQRL-HAQRGVLLVCDIHAHSR 816
            ++ YTLTF  TF+H  D  YFA+  PYTY+ L+  L+ L          R+  LC TL GN  PL+T+TA             R RP + LTARVHPGE+NASW+M G L FL G  P AA LRE ++FK++PMLNPDGV+NGNHR SL+G DLNR+W  P   LHP IYH ++L+Q L H QR  L+ CD H HSR
Sbjct:  719 KSYYTLTFSKTFSHKDDVCYFAYHYPYTYSTLKMHLSKLEALKTPQIYIRQDVLCETLGGNSCPLLTITAMPESNSNDHICQFRNRPLIFLTARVHPGETNASWVMKGTLEFLMGTSPLAANLREAYIFKIVPMLNPDGVVNGNHRCSLSGEDLNRQWQNPNPELHPTIYHTKSLLQYLAHIQRAPLVFCDYHGHSR 915
[Close]
BLAST of jgi.p|Trimin1|158854 vs. uniprot
Match: A0A8D3CJ55_SCOMX (Tubulin-glutamate carboxypeptidase n=1 Tax=Scophthalmus maximus TaxID=52904 RepID=A0A8D3CJ55_SCOMX)

HSP 1 Score: 202 bits (514), Expect = 1.590e-55
Identity = 102/197 (51.78%), Postives = 126/197 (63.96%), Query Frame = 1 
Query:  232 RARYTLTFVHTFAHGGDTVYFAHSLPYTYARLRGALAALGRDAARAAVARRTTLCRTLAGNDVPLVTVTAXXXXXXXXXXXLAR-RPAVVLTARVHPGESNASWIMDGLLRFLTGAHPAAAALRERFVFKVIPMLNPDGVINGNHRASLAGCDLNRRWAAPKAHLHPEIYHARALIQRL-HAQRGVLLVCDIHAHSR 816
            ++ YTLTF  TF+H  D  YFA+  PYTY+ L+  L+ L          R+  LC TL GN  PL+T+TA             R RP + LTARVHPGE+NASW+M G L FL G  P AA LRE ++FK++PMLNPDGV+NGNHR SL+G DLNR+W  P   LHP IYH ++L+Q L H QR  L+ CD H HSR
Sbjct:  714 KSYYTLTFSKTFSHKDDVCYFAYHYPYTYSTLKMHLSKLEALKTPQIYIRQDVLCETLGGNSCPLLTITAMPESNSNDHICQFRNRPLIFLTARVHPGETNASWVMKGTLEFLMGTSPLAANLREAYIFKIVPMLNPDGVVNGNHRCSLSGEDLNRQWQNPNPELHPTIYHTKSLLQYLAHIQRAPLVFCDYHGHSR 910
The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|158854 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A835YMV6_9STRA4.560e-158100.00Peptidase_M14 domain-containing protein (Fragment)... [more]
UPI0010FB2B186.520e-5850.25cytosolic carboxypeptidase 1-like n=1 Tax=Labrus b... [more]
A0A7J5YNR4_DISMA2.660e-5649.75Uncharacterized protein n=1 Tax=Dissostichus mawso... [more]
A0A1A8EZ81_9TELE3.310e-5650.76ATP/GTP binding protein 1 (Fragment) n=1 Tax=Notho... [more]
A0A8J5XD53_DIALT4.470e-5652.82Uncharacterized protein n=1 Tax=Diacronema lutheri... [more]
A0A8D3BZV1_SCOMX6.100e-5651.78Tubulin-glutamate carboxypeptidase n=1 Tax=Scophth... [more]
A0A3P8VZ54_CYNSE7.140e-5652.28Tubulin-glutamate carboxypeptidase n=3 Tax=Cynoglo... [more]
A0A8D3BBH4_SCOMX7.250e-5651.78Tubulin-glutamate carboxypeptidase n=1 Tax=Scophth... [more]
A0A8D3CVQ6_SCOMX1.590e-5551.78Tubulin-glutamate carboxypeptidase n=1 Tax=Scophth... [more]
A0A8D3CJ55_SCOMX1.590e-5551.78Tubulin-glutamate carboxypeptidase n=1 Tax=Scophth... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Contig_7contigContig_7:661960..666040 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Tribonema minus UTEX_B_31562021-06-17
Properties
Property NameValue
ProteomeIdTrimin1|158854|e_gw1.7.127.1
GOsGO:0001505,GO:0001654,GO:0001754,GO:0001775,GO:0002376,GO:0002520,GO:0002521,GO:0003008,GO:0003674,GO:0003824,GO:0004180,GO:0004181,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005730,GO:0005737,GO:0005739,GO:0005829,GO:0006464,GO:0006508,GO:0006807,GO:0006996,GO:0007005,GO:0007275,GO:0007399,GO:0007417,GO:0007420,GO:0007423,GO:0007610,GO:0007626,GO:0007628,GO:0008092,GO:0008150,GO:0008152,GO:0008233,GO:0008235,GO:0008237,GO:0008238,GO:0008344,GO:0009653,GO:0009790,GO:0009792,GO:0009887,GO:0009987,GO:0015631,GO:0016043,GO:0016787,GO:0018193,GO:0018200,GO:0018410,GO:0019538,GO:0021533,GO:0021537,GO:0021549,GO:0021575,GO:0021587,GO:0021680,GO:0021692,GO:0021694,GO:0021695,GO:0021696,GO:0021697,GO:0021702,GO:0021772,GO:0021953,GO:0021988,GO:0022008,GO:0022037,GO:0030097,GO:0030098,GO:0030154,GO:0030182,GO:0030217,GO:0030534,GO:0030900,GO:0030902,GO:0031974,GO:0031981,GO:0032501,GO:0032502,GO:0033077,GO:0035608,GO:0035609,GO:0035610,GO:0036211,GO:0042110,GO:0042133,GO:0043009,GO:0043010,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043412,GO:0043687,GO:0044237,GO:0044238,GO:0044260,GO:0044267,GO:0044422,GO:0044424,GO:0044428,GO:0044444,GO:0044446,GO:0044464,GO:0045321,GO:0046530,GO:0046649,GO:0048513,GO:0048534,GO:0048592,GO:0048646,GO:0048699,GO:0048731,GO:0048856,GO:0048869,GO:0050877,GO:0050905,GO:0060041,GO:0060322,GO:0065007,GO:0065008,GO:0070011,GO:0070013,GO:0071704,GO:0071840,GO:0090596,GO:0090659,GO:0140096,GO:1901564
Preferred nameAGTPBP1
DescriptionATP GTP binding protein 1
COG categoryE
Max annot lvl33208|Metazoa
EggNOG OGsCOG2866@1|root,KOG3641@2759|Eukaryota,38ENF@33154|Opisthokonta,3BC2Y@33208|Metazoa,3CSXB@33213|Bilateria,48831@7711|Chordata,49233@7742|Vertebrata,49STI@7898|Actinopterygii
Evalue1.17e-56
Seed ortholog244447.XP_008334914.1
Hectar predicted targeting categoryother localisation
TranscriptId159176
TrackFilteredModels1
ProteinId158854
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|158854gene_2544Tribonema minus UTEX_B_3156 geneContig_7 661960..666040 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
exon_2544_1exon_2544_1Tribonema minus UTEX_B_3156 exonContig_7 661960..662466 +
exon_2544_2exon_2544_2Tribonema minus UTEX_B_3156 exonContig_7 662961..663071 +
exon_2544_3exon_2544_3Tribonema minus UTEX_B_3156 exonContig_7 663840..663953 +
exon_2544_4exon_2544_4Tribonema minus UTEX_B_3156 exonContig_7 665957..666040 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
CDS_2544CDS_2544Tribonema minus UTEX_B_3156 CDSContig_7 661960..662466 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|158854Trimin1|158854|e_gw1.7.127.1Tribonema minus UTEX_B_3156 polypeptideContig_7 661960..666040 +


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>mRNA_2544 ID=mRNA_2544|Name=jgi.p|Trimin1|158854|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=816bp|location=Sequence derived from alignment at Contig_7:661960..666040+ (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon.  
ATGAAGCCGCTGGTGTACAGCGTCGCCGCCACCACAGCCGCCGGGAGCGC
ACCGCACGCGCATCACCGCTCAACGGGCTGGCACCGCTCCGGCGAGCAGG
TCCGCTACTTCTGCAGCAGCGGCAGCGGCAGCGGCAACGGCGGCGGCGGC
GGCGGCAGCAGCACGTTCGCTGGCGGCAGCATCGGCGGCAGCGGCGGCGG
CGCTGCCGCCAAGAGGGCAGCGGCGGCGCCGCGCGCGCGCTACACGCTCA
CCTTCGTCCACACGTTTGCGCACGGCGGCGACACGGTGTACTTTGCGCAC
TCCCTGCCGTACACGTACGCGCGCCTGCGCGGCGCGCTGGCGGCGCTCGG
CCGCGATGCCGCGCGCGCCGCCGTCGCGCGCCGCACGACCCTGTGCCGCA
CGCTCGCCGGCAACGACGTGCCGCTCGTGACGGTGACCGCCGCGTGCTGC
GGCGGCGGCGGCGGCGCTCAGCAGCTGGCGCGGCGCCCCGCGGTCGTCCT
CACCGCGCGCGTCCATCCCGGCGAATCCAACGCCAGCTGGATCATGGATG
GCCTGCTGCGGTTCCTCACGGGTGCGCACCCCGCCGCGGCGGCGCTGCGC
GAGCGCTTCGTGTTCAAGGTGATACCCATGCTCAACCCCGACGGCGTCAT
CAACGGCAACCACCGCGCGAGCCTCGCGGGCTGCGACCTCAACAGGCGCT
GGGCCGCGCCCAAGGCGCATCTGCACCCCGAGATCTACCACGCCAGAGCC
CTCATCCAGCGGCTGCACGCGCAGCGCGGCGTCCTCCTGGTGTGCGACAT
ACACGCGCACAGCCGC
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protein sequence of jgi.p|Trimin1|158854

>Trimin1|158854|e_gw1.7.127.1 ID=Trimin1|158854|e_gw1.7.127.1|Name=jgi.p|Trimin1|158854|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=272bp
MKPLVYSVAATTAAGSAPHAHHRSTGWHRSGEQVRYFCSSGSGSGNGGGG
GGSSTFAGGSIGGSGGGAAAKRAAAAPRARYTLTFVHTFAHGGDTVYFAH
SLPYTYARLRGALAALGRDAARAAVARRTTLCRTLAGNDVPLVTVTAACC
GGGGGAQQLARRPAVVLTARVHPGESNASWIMDGLLRFLTGAHPAAAALR
ERFVFKVIPMLNPDGVINGNHRASLAGCDLNRRWAAPKAHLHPEIYHARA
LIQRLHAQRGVLLVCDIHAHSR
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mRNA from alignment at Contig_7:661960..666040+

Legend: exonpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_2544 ID=mRNA_2544|Name=jgi.p|Trimin1|158854|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=4081bp|location=Sequence derived from alignment at Contig_7:661960..666040+ (Tribonema minus UTEX_B_3156 )
ATGAAGCCGCTGGTGTACAGCGTCGCCGCCACCACAGCCGCCGGGAGCGC
ACCGCACGCGCATCACCGCTCAACGGGCTGGCACCGCTCCGGCGAGCAGG
TCCGCTACTTCTGCAGCAGCGGCAGCGGCAGCGGCAACGGCGGCGGCGGC
GGCGGCAGCAGCACGTTCGCTGGCGGCAGCATCGGCGGCAGCGGCGGCGG
CGCTGCCGCCAAGAGGGCAGCGGCGGCGCCGCGCGCGCGCTACACGCTCA
CCTTCGTCCACACGTTTGCGCACGGCGGCGACACGGTGTACTTTGCGCAC
TCCCTGCCGTACACGTACGCGCGCCTGCGCGGCGCGCTGGCGGCGCTCGG
CCGCGATGCCGCGCGCGCCGCCGTCGCGCGCCGCACGACCCTGTGCCGCA
CGCTCGCCGGCAACGACGTGCCGCTCGTGACGGTGACCGCCGCGTGCTGC
GGCGGCGGCGGCGGCGCTCAGCAGCTGGCGCGGCGCCCCGCGGTCGTCCT
CACCGCGGTGAGGATCCTTGCCAGTGGTTTTGGTCTTCCGGGAATGACTT
CATCGGTGACTTCGTCGGCAGCGCAGAAGCAGTCAGGAAGCACCTTTACC
TCAAGAGTCACTGAGGTTTTGAAGTTGCCGTCAGCGTGCTACTGCGTGCT
TGCGCTCGTATGGATGCTGGCCCTCTGCATAGGCTACTGTAGTTCTCTGT
TTCTGGGACGTGCAAGGTCGACGGGGTAGCAGCCTGGGCACACATAGAGC
GCTCAAAGGATGCACCCTGCACGTTGCCCCCATTTGCCATTGAGAATGTT
GGCAAGGGTTAGAGCTGGGATAAGCGTGAGGGGCAGTGGCAGGGCTGACA
GTAGCGCTAGAGTTAGGGTTGGAACTGCAGTTGTGGTGCATCCCGCACGT
TCGCCCAGCGCACCCCAGCTCCAGTGCTCTCACGCCACTCTCAGCCCCGC
GCTCACCGCCGCCGCCACCGCCGTTGCCGTCATGACCCCGCCCCTCCGCA
GCGCGTCCATCCCGGCGAATCCAACGCCAGCTGGATCATGGATGGCCTGC
TGCGGTTCCTCACGGGTGCGCACCCCGCCGCGGCGGCGCTGCGCGAGCGC
TTCGTGTTCAAGGTGAGCGCCGCTGCAGCGCGGCTCCGCAGCGGCAGCGT
CGGCCCTGTGTGCTGGGCGTTCATGGCATGTCAAAACGCGGTTTCGGAGG
CGGCGCGGGTGGGCGGCTTCAGAGCGCCACAGCAGAGGCGGCGTCGGTGG
GCGGCTTGTGCACGTGGGCGCGCGGGCGCGCCGCGCCACGTGCGTGTGGC
GGCAACGGCTTGTTGCCGCCGGTTTCAGTGCTCAGCAGTGTGTGTCGCAC
GGAAGGAAACGCGCGGCGGCACGCCATTATCATCATCGAGGTGAACTGGC
ACAAGCTGGCGCACGGGCTACTGCTGGCTGCACTGCAGCAGCAGCAGGTC
ACCTGACAGCACGTGCGGCCAGGCCACAGCAGCAGTTTTCAGCAGCGAGC
CCAGTGTTCAACTGCCTAAGCCCTTCGCCGTTCCTGCTGCACGCTCCAGC
GACTGCTTTTGCTGGCGGTTGAAGCGCTCAGCAGCATGTTCCAATCGCTG
AGACAACTTGGACCAAACCTGTGCACGGGCAACCGCTTGTTGCCCCCCAG
CAGCAGCAGAGAGCACCAGCCGGCATGCACCGTAAAGCATCAGCAGCTTT
CTGCGGCAAGTCCACTGTCTGATTGCTTAAGCCCTGCACCGTTCCTGCTG
CGTACGATCCGTGCCATCGCCGCAAGTGACCGCCGCATGCGCCACCGCGC
GTCCCAGGGGCCGCCAGGCGTTCCGCGTGTGTTTCTGGGGTTTACTACTA
CCCTACGCGCTTTCACTTGATGCTGAGCAGGTGATACCCATGCTCAACCC
CGACGGCGTCATCAACGGCAACCACCGCGCGAGCCTCGCGGGCTGCGACC
TCAACAGGCGCTGGGCCGCGCCCAAGGCGCATCTGCACCCCGAGGTGAGG
TCAAGGTGATGTGAGGAGTACCCTAACCTCAACTTTAACCCTAACTCTGG
GGGTGGCCTTAAGCTGAATAGTCGTTGGCGATGGGAAGCGCTCATGCAGC
ATCTGCACCCCGAGGTGATGTGACGTGATGAGCCTACACCTAATTCCAAG
TCTAGGGCCAGCCCTGATTTGAGCAGTCTTTGACGCTATGGCGCGCACTA
GCACCATCTCCGCTCCGAGGTGAGGTGACATGAGGGTTAACCCAGCCCTA
ACCCTAAGCCTAGGGATAGTCCTAATCTGTGTCAGGCATTGGCATAGGCG
CTGGGTCGTGCCCAAGCAGCATCTGCACCGCGAGGTGACGTGACGTGCGC
AGCACCTAGCCTCAATGCTAACCCTGACCCTAGGGCTTGTCCTAACCTGA
ATAGCATTGGCGCTGCGTCCTGACCTTAATGCTAACCCTAACTCTATGTA
GGGCTAGCCCTAATCTGAATAGTCGTTGGCGCTGGGCCGCGCCTGAGCAC
GCCATCTGCACTCCAAGGCGAGGTGACGTGATGAGCACCCTTACCCTGAC
GTTACACCCAGGGCTAGCCCTGACTTAAGTAGTCGTTGGCGCTGGGCCGC
GCCCAAGGCATATCTGCGCCCCGAGTTGACGTGCCGTGCGCAGCACTTCA
ACCTCAACTTTACCCTAACTCTAGGGCTAGCACTATCTTGAACAGTCGTT
GGCGCTGGGCGGTGCCCGAGGCGCATGTGCACCCCGAGGTGAGGGGAGTG
AGGAGTACCCTAACCCTAATCGAAGCCTAGGACTAGCCCTGACCTGAGTA
GTCGTTGGCGCTGGGCCTCGCCCAAGACGCATCTGCACCCTGAGGTGAGG
TGACGTGCGCAGCACCCTAACCTTCAACCTAGCCCCAAGTTTTGGGCTAA
CCCTAACCTGAAGAGTCGTTGGCGCTGGGCTGCGCCCAAGCAGCATCTAC
ACCTCGAGGTGAGGCGACGTGAGGAGTACGCTAACCCTAACCCTAGGGCT
AGCGCTAACCTGAGTAGGTTGTTGGCGCTGGGCCGCGCCCAACCAGCATC
TGCACTCCAAGGCGAGGTGACGTCAGCAGTACCCTAACCTTAAGTCTAGC
CCTAGGACTGACCCTAACCTGAGTGGTTGGTGGCGCTGGGCCGCGCGCAA
GCAGTGTCTGCGCCCCGAGGTGAGGTGACGTGAGGGGGACCTTAACCCTA
ACCCTCACCTTAGGGCTTGCCTTAACCTGAGCAGTCACTGGCAGTGGGCC
GCACAAGCAGCATGTGCACCTTGAGGTGAGGCGACCCTGAGGAGTACCCT
AACCCTAAGCCTAGGGCTAGTCCTATTCTGAGTAGTCGTTGGCCCTGGAG
GCTGAGGGTTGGTTGATGAGACCTAGGGCTAGGATTAGAGGCAGGGCCTT
TGGCAGCCACAGCCAAGCCATCGCACGACAGATCCAGTTGTTTAGCAGAT
AAAGCCAGCAGCTCAGAGCCAACTAGGTGTACTGCTGTCCGTGAGCAGAC
CCTTGGTGTGCACGACGTTCCGGCTATGTCCACACGGTGACGTGAGCAGC
ACTATAACCCTAACTCTAAGCTTCAACGCTGACCCTACCCCTGCCGTCCT
TAGCCTAGCTGTGGCACGTGGCACTCGGGTGCATGCCACTGCTTGACGCA
CACGCCTCCACATATGTTCGAACAGGAGTCCGCGGTGCACCTGCCGAGCG
CTGCTGGCGGGTTACACTGCCTCTCAAGCACCGTACACGAAGGAGTCACG
CAGCAGCTGCTTCTACAAAGCAGCGCGGCTTCTGCCTACTGCGAAATTTA
AAGTTGCTGCAGCTGTCCCAGCTTGGCCATTGGGAGCGCTTCATACTTCA
AATTCAAGACCACTGCCAGCAACAGTGGCCTCATGTACGCCTTCATCGCG
CTGAGCCGCTGACTCACCCCGCGCGCACCGCCCCCCCACGCTCAACCTGA
TGCATGCCCTCTCTATCTCGCATGTCGCCGCGCCTCTCGCCGCGCAGATC
TACCACGCCAGAGCCCTCATCCAGCGGCTGCACGCGCAGCGCGGCGTCCT
CCTGGTGTGCGACATACACGCGCACAGCCGC
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Coding sequence (CDS) from alignment at Contig_7:661960..666040+

>mRNA_2544 ID=mRNA_2544|Name=jgi.p|Trimin1|158854|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=816bp|location=Sequence derived from alignment at Contig_7:661960..666040+ (Tribonema minus UTEX_B_3156 )
ATGAAGCCGCTGGTGTACAGCGTCGCCGCCACCACAGCCGCCGGGAGCGC
ACCGCACGCGCATCACCGCTCAACGGGCTGGCACCGCTCCGGCGAGCAGG
TCCGCTACTTCTGCAGCAGCGGCAGCGGCAGCGGCAACGGCGGCGGCGGC
GGCGGCAGCAGCACGTTCGCTGGCGGCAGCATCGGCGGCAGCGGCGGCGG
CGCTGCCGCCAAGAGGGCAGCGGCGGCGCCGCGCGCGCGCTACACGCTCA
CCTTCGTCCACACGTTTGCGCACGGCGGCGACACGGTGTACTTTGCGCAC
TCCCTGCCGTACACGTACGCGCGCCTGCGCGGCGCGCTGGCGGCGCTCGG
CCGCGATGCCGCGCGCGCCGCCGTCGCGCGCCGCACGACCCTGTGCCGCA
CGCTCGCCGGCAACGACGTGCCGCTCGTGACGGTGACCGCCGCGTGCTGC
GGCGGCGGCGGCGGCGCTCAGCAGCTGGCGCGGCGCCCCGCGGTCGTCCT
CACCGCGCGCGTCCATCCCGGCGAATCCAACGCCAGCTGGATCATGGATG
GCCTGCTGCGGTTCCTCACGGGTGCGCACCCCGCCGCGGCGGCGCTGCGC
GAGCGCTTCGTGTTCAAGGTGATACCCATGCTCAACCCCGACGGCGTCAT
CAACGGCAACCACCGCGCGAGCCTCGCGGGCTGCGACCTCAACAGGCGCT
GGGCCGCGCCCAAGGCGCATCTGCACCCCGAGATCTACCACGCCAGAGCC
CTCATCCAGCGGCTGCACGCGCAGCGCGGCGTCCTCCTGGTGTGCGACAT
ACACGCGCACAGCCGC
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