mRNA_2454 (mRNA) Tribonema minus UTEX_B_3156

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
Namejgi.p|Trimin1|158178
Unique NamemRNA_2454
TypemRNA
OrganismTribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Homology
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BLAST of jgi.p|Trimin1|158178 vs. uniprot
Match: A0A836CBR7_9STRA (Uncharacterized protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CBR7_9STRA)

HSP 1 Score: 147 bits (372), Expect = 3.040e-45
Identity = 69/69 (100.00%), Postives = 69/69 (100.00%), Query Frame = 1 
Query:    1 DWLDVDVIDTTWLENNIHSMRHSFYNLNSTIVDDLRDLLVHKRRAEMRPQVTHKFNNVYTYMVSQPLVC 207
            DWLDVDVIDTTWLENNIHSMRHSFYNLNSTIVDDLRDLLVHKRRAEMRPQVTHKFNNVYTYMVSQPLVC
Sbjct:    1 DWLDVDVIDTTWLENNIHSMRHSFYNLNSTIVDDLRDLLVHKRRAEMRPQVTHKFNNVYTYMVSQPLVC 69
[Close]
BLAST of jgi.p|Trimin1|158178 vs. uniprot
Match: A0A836CAT8_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CAT8_9STRA)

HSP 1 Score: 114 bits (285), Expect = 5.780e-28
Identity = 51/64 (79.69%), Postives = 60/64 (93.75%), Query Frame = 1 
Query:    1 DWLDVDVIDTTWLENNIHSMRHSFYNLNSTIVDDLRDLLVHKRRAEMRPQVTHKFNNVYTYMVS 192
            DWLD+DVIDTTWLENNIHSMRHSF+N+N TIVDDLR+L+VH RRAE R QVTHKFNNV+++MV+
Sbjct:  865 DWLDMDVIDTTWLENNIHSMRHSFFNINPTIVDDLRELIVHHRRAEDRVQVTHKFNNVFSFMVA 928
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BLAST of jgi.p|Trimin1|158178 vs. uniprot
Match: A0A2D4CBF0_PYTIN (GMC_OxRdtase_N domain-containing protein n=1 Tax=Pythium insidiosum TaxID=114742 RepID=A0A2D4CBF0_PYTIN)

HSP 1 Score: 87.4 bits (215), Expect = 1.690e-18
Identity = 35/64 (54.69%), Postives = 53/64 (82.81%), Query Frame = 1 
Query:    1 DWLDVDVIDTTWLENNIHSMRHSFYNLNSTIVDDLRDLLVHKRRAEMRPQVTHKFNNVYTYMVS 192
            D+LDVDV+DTTW++NN+H++RH+++NLN T++DDLR ++V KRRA  RP + H   NVY ++V+
Sbjct: 1124 DFLDVDVVDTTWMDNNVHAVRHNYFNLNPTMIDDLRQIIVSKRRARHRPGLLHTSANVYIFLVA 1187
[Close]
BLAST of jgi.p|Trimin1|158178 vs. uniprot
Match: A0A2D4CBF4_PYTIN (GMC_OxRdtase_N domain-containing protein (Fragment) n=1 Tax=Pythium insidiosum TaxID=114742 RepID=A0A2D4CBF4_PYTIN)

HSP 1 Score: 87.4 bits (215), Expect = 1.690e-18
Identity = 35/64 (54.69%), Postives = 53/64 (82.81%), Query Frame = 1 
Query:    1 DWLDVDVIDTTWLENNIHSMRHSFYNLNSTIVDDLRDLLVHKRRAEMRPQVTHKFNNVYTYMVS 192
            D+LDVDV+DTTW++NN+H++RH+++NLN T++DDLR ++V KRRA  RP + H   NVY ++V+
Sbjct: 1151 DFLDVDVVDTTWMDNNVHAVRHNYFNLNPTMIDDLRQIIVSKRRARHRPGLLHTSANVYIFLVA 1214
[Close]
BLAST of jgi.p|Trimin1|158178 vs. uniprot
Match: K3X1T1_GLOUD (Uncharacterized protein n=1 Tax=Globisporangium ultimum (strain ATCC 200006 / CBS 805.95 / DAOM BR144) TaxID=431595 RepID=K3X1T1_GLOUD)

HSP 1 Score: 84.3 bits (207), Expect = 2.020e-17
Identity = 37/65 (56.92%), Postives = 53/65 (81.54%), Query Frame = 1 
Query:    4 WLDVDVIDTTWLENNIHSMRHSFYNLNSTIVDDLRDLLVHKRRAEMRPQV--THKFNNVYTYMVS 192
            +LD+DVIDTTW++NN+H++RH+++NLN TIVDDLR L+VHK+RA  RP +  T    NVY ++V+
Sbjct:  693 YLDMDVIDTTWMDNNVHAIRHNYFNLNPTIVDDLRHLIVHKKRARSRPGLLQTTSAENVYIFLVA 757
[Close]
BLAST of jgi.p|Trimin1|158178 vs. uniprot
Match: A0A836CKC0_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CKC0_9STRA)

HSP 1 Score: 84.0 bits (206), Expect = 2.780e-17
Identity = 37/50 (74.00%), Postives = 44/50 (88.00%), Query Frame = 1 
Query:    4 WLDVDVIDTTWLENNIHSMRHSFYNLNSTIVDDLRDLLVHKRRAEMRPQV 153
            WLD+DVIDTTWL+NNIH MRH+F+N+N TIVDDLR+LLV+ RRA  R QV
Sbjct:  889 WLDMDVIDTTWLDNNIHDMRHTFFNINPTIVDDLRELLVYHRRASHRDQV 938
[Close]
BLAST of jgi.p|Trimin1|158178 vs. uniprot
Match: K3X1S0_GLOUD (Uncharacterized protein n=1 Tax=Globisporangium ultimum (strain ATCC 200006 / CBS 805.95 / DAOM BR144) TaxID=431595 RepID=K3X1S0_GLOUD)

HSP 1 Score: 83.2 bits (204), Expect = 5.110e-17
Identity = 32/67 (47.76%), Postives = 52/67 (77.61%), Query Frame = 1 
Query:    4 WLDVDVIDTTWLENNIHSMRHSFYNLNSTIVDDLRDLLVHKRRAEMRPQVTHKFNNVYTYMVSQPLV 204
            +LD+DVIDTTW++NN+H +RHS++NLN T++DD+R ++VHK+RA  R  +T    N++ ++V+   V
Sbjct:  526 FLDIDVIDTTWMDNNVHYIRHSYFNLNPTVIDDIRQIVVHKQRARFRSGLTRTAGNIHIFLVAPSFV 592
[Close]
BLAST of jgi.p|Trimin1|158178 vs. uniprot
Match: A0A7S2G1M7_9EUKA (Hypothetical protein n=1 Tax=Haptolina brevifila TaxID=156173 RepID=A0A7S2G1M7_9EUKA)

HSP 1 Score: 76.6 bits (187), Expect = 1.940e-16
Identity = 29/61 (47.54%), Postives = 52/61 (85.25%), Query Frame = 1 
Query:    7 LDVDVIDTTWLENNIHSMRHSFYNLNSTIVDDLRDLLVHKRRAEMRP-QVTHKFNNVYTYM 186
            LD+DV+DT+W+++N+H MRH+++N+N  ++DD+RD++ HKRRA +R  ++TH+  NV+++M
Sbjct:   51 LDMDVVDTSWMDSNVHPMRHNYFNVNRWMLDDIRDVIAHKRRAHLRTGRLTHRRGNVWSFM 111
[Close]
BLAST of jgi.p|Trimin1|158178 vs. uniprot
Match: A0A7S2GUL1_9EUKA (Hypothetical protein n=1 Tax=Haptolina brevifila TaxID=156173 RepID=A0A7S2GUL1_9EUKA)

HSP 1 Score: 75.9 bits (185), Expect = 3.260e-16
Identity = 31/63 (49.21%), Postives = 52/63 (82.54%), Query Frame = 1 
Query:    7 LDVDVIDTTWLENNIHSMRHSFYNLNSTIVDDLRDLLVHKRRAEMRP-QVTHKFNNVYTYMVS 192
            LDVDVID +W++NN+HSMRH+F+N+N  ++DDLR+++  KRRA +R  ++T +F NV++++ +
Sbjct:   44 LDVDVIDVSWMDNNVHSMRHNFFNINRWMIDDLREIVSTKRRARLRTARMTRRFANVWSFLAA 106
[Close]
BLAST of jgi.p|Trimin1|158178 vs. uniprot
Match: A0A8K1CFS4_PYTOL (Uncharacterized protein n=1 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1CFS4_PYTOL)

HSP 1 Score: 80.5 bits (197), Expect = 4.570e-16
Identity = 35/66 (53.03%), Postives = 54/66 (81.82%), Query Frame = 1 
Query:    1 DWLDVDVIDTTWLENNIHSMRHSFYNLNSTIVDDLRDLLVHKRRAEMRPQV--THKFNNVYTYMVS 192
            D+LD+DVIDTTW++NN+HS+RH+++NLN T+VDD+R+L+V +RRA  R  +  T   +NVY ++V+
Sbjct:  699 DYLDMDVIDTTWMDNNVHSLRHNYFNLNPTVVDDIRNLIVSRRRAASRRGLLQTMSADNVYIFLVA 764
The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|158178 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A836CBR7_9STRA3.040e-45100.00Uncharacterized protein (Fragment) n=1 Tax=Tribone... [more]
A0A836CAT8_9STRA5.780e-2879.69Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A2D4CBF0_PYTIN1.690e-1854.69GMC_OxRdtase_N domain-containing protein n=1 Tax=P... [more]
A0A2D4CBF4_PYTIN1.690e-1854.69GMC_OxRdtase_N domain-containing protein (Fragment... [more]
K3X1T1_GLOUD2.020e-1756.92Uncharacterized protein n=1 Tax=Globisporangium ul... [more]
A0A836CKC0_9STRA2.780e-1774.00Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
K3X1S0_GLOUD5.110e-1747.76Uncharacterized protein n=1 Tax=Globisporangium ul... [more]
A0A7S2G1M7_9EUKA1.940e-1647.54Hypothetical protein n=1 Tax=Haptolina brevifila T... [more]
A0A7S2GUL1_9EUKA3.260e-1649.21Hypothetical protein n=1 Tax=Haptolina brevifila T... [more]
A0A8K1CFS4_PYTOL4.570e-1653.03Uncharacterized protein n=1 Tax=Pythium oligandrum... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Contig_5contigContig_5:1691246..1692133 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Tribonema minus UTEX_B_31562021-06-17
Properties
Property NameValue
ProteomeIdTrimin1|158178|e_gw1.5.271.1
Descriptionfunction. Source PGD
COG categoryS
Max annot lvl121069|Pythiales
EggNOG OGs29EDE@1|root,2RMID@2759|Eukaryota,1MF8C@121069|Pythiales
Evalue1.78e-18
Seed ortholog115417.EPrPW00000018270
Hectar predicted targeting categoryother localisation
TranscriptId158500
TrackFilteredModels1
ProteinId158178
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|158178gene_2454Tribonema minus UTEX_B_3156 geneContig_5 1691246..1692133 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|158178Trimin1|158178|e_gw1.5.271.1Tribonema minus UTEX_B_3156 polypeptideContig_5 1691246..1692133 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
exon_2454_2exon_2454_2Tribonema minus UTEX_B_3156 exonContig_5 1691246..1691431 -
exon_2454_1exon_2454_1Tribonema minus UTEX_B_3156 exonContig_5 1692110..1692133 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
CDS_2454CDS_2454Tribonema minus UTEX_B_3156 CDSContig_5 1692110..1692133 -


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>mRNA_2454 ID=mRNA_2454|Name=jgi.p|Trimin1|158178|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=210bp|location=Sequence derived from alignment at Contig_5:1691246..1692133- (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon.  
GACTGGCTCGATGTGGATGTCATAGACACCACATGGCTGGAGAACAACAT
CCACAGCATGCGCCACAGTTTCTACAACCTCAACTCCACCATTGTAGATG
ACCTTCGGGACCTGCTGGTGCACAAGCGGCGCGCTGAGATGCGCCCCCAG
GTCACTCACAAGTTCAACAACGTCTACACGTACATGGTGAGTCAACCTCT
AGTTTGTTAA
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protein sequence of jgi.p|Trimin1|158178

>Trimin1|158178|e_gw1.5.271.1 ID=Trimin1|158178|e_gw1.5.271.1|Name=jgi.p|Trimin1|158178|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=70bp
DWLDVDVIDTTWLENNIHSMRHSFYNLNSTIVDDLRDLLVHKRRAEMRPQ
VTHKFNNVYTYMVSQPLVC*
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mRNA from alignment at Contig_5:1691246..1692133-

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_2454 ID=mRNA_2454|Name=jgi.p|Trimin1|158178|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=888bp|location=Sequence derived from alignment at Contig_5:1691246..1692133- (Tribonema minus UTEX_B_3156 )
GACTGGCTCGATGTGGATGTCATAGTGAGTACCTACCTACCAACCCCCCC
CCCCCCACACAAACACCCATTTTCCAAACCATTATGTCAGCACGATGTAC
CGCATTTGGTGTGGCTGATGCCAGCATGCACAAGCACACTCTGTGCTTTT
GAGCAGCTCTTTTGTGTGGTCTCCAGATGGTTCAGTGCCAGCAGCGCGAA
CTTCTCTGTCACTGTAAGTACCTGCATGCCTGCCCGCGGTGGTCCCATCT
TGTCAGCATCGTGTGTTGCGTGTGCTTGTTGCCAGCTCACATAGATCAGC
TGCAAGCTAACCCTAACCCTGGATGCACCTCAATGCTGAGCACTGTTGCA
TGTCAACGCTGAGCGCTGCTGCGCCTCAATGCAGCGAGCCCCTGCGCCGT
TCGCTGCTGTCGCTTCGTCGACAGAGGTCCCAATCGGAACTGAGGAGCAG
ACGCTGTCAATGTGAATGGTCATGTGCTGCACGCGTTGTGATTGAGACGG
GATACCGCGCCCCCGTTTTACTATGCAAGGGGGGCACCAGGCAGGATGCC
TACAAGAACGTTACGTGCAAGTGCAGCATTATTACGTATTGTCATGTTGC
TGATGCACCTTTGTTAAAACGAGAGTTGAATCGGCTGCTCCTCAAGTTTC
ATGTCACTGAAAGTCTGTTGCCTGGTTTGTGGCCACCACGCACCTGTTTC
AGGACACCACATGGCTGGAGAACAACATCCACAGCATGCGCCACAGTTTC
TACAACCTCAACTCCACCATTGTAGATGACCTTCGGGACCTGCTGGTGCA
CAAGCGGCGCGCTGAGATGCGCCCCCAGGTCACTCACAAGTTCAACAACG
TCTACACGTACATGGTGAGTCAACCTCTAGTTTGTTAA
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Coding sequence (CDS) from alignment at Contig_5:1691246..1692133-

>mRNA_2454 ID=mRNA_2454|Name=jgi.p|Trimin1|158178|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=210bp|location=Sequence derived from alignment at Contig_5:1691246..1692133- (Tribonema minus UTEX_B_3156 )
GACTGGCTCGATGTGGATGTCATAGACACCACATGGCTGGAGAACAACAT
CCACAGCATGCGCCACAGTTTCTACAACCTCAACTCCACCATTGTAGATG
ACCTTCGGGACCTGCTGGTGCACAAGCGGCGCGCTGAGATGCGCCCCCAG
GTCACTCACAAGTTCAACAACGTCTACACGTACATGGTGAGTCAACCTCT
AGTTTGTTAA
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