mRNA_2426 (mRNA) Tribonema minus UTEX_B_3156

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
Namejgi.p|Trimin1|158093
Unique NamemRNA_2426
TypemRNA
OrganismTribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Homology
[Close]
BLAST of jgi.p|Trimin1|158093 vs. uniprot
Match: A0A836CBV7_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CBV7_9STRA)

HSP 1 Score: 221 bits (563), Expect = 3.610e-73
Identity = 108/108 (100.00%), Postives = 108/108 (100.00%), Query Frame = 1 
Query:    1 MVVRGDEEWVTLDMKLLNWRYMNHKQAVRTSTHVFTIRRLLAERHGNVKDLVICHTAFTQANEMADEMKTLAEYSIKGKRKDEEPLSIIIFYDFRPNNTDALLLASFD 324
            MVVRGDEEWVTLDMKLLNWRYMNHKQAVRTSTHVFTIRRLLAERHGNVKDLVICHTAFTQANEMADEMKTLAEYSIKGKRKDEEPLSIIIFYDFRPNNTDALLLASFD
Sbjct:    1 MVVRGDEEWVTLDMKLLNWRYMNHKQAVRTSTHVFTIRRLLAERHGNVKDLVICHTAFTQANEMADEMKTLAEYSIKGKRKDEEPLSIIIFYDFRPNNTDALLLASFD 108
[Close]
BLAST of jgi.p|Trimin1|158093 vs. uniprot
Match: A0A6H5JSB9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JSB9_9PHAE)

HSP 1 Score: 120 bits (300), Expect = 1.270e-32
Identity = 56/105 (53.33%), Postives = 76/105 (72.38%), Query Frame = 1 
Query:    1 MVVRGDEEWVTLDMKLLNWRYMNHKQAVRTSTHVFTIRRLLAERHGNVKDLVICHTAFTQANEMADEMKTLAEYSIKGK-RKDEEPLSIIIFYDFRPNNTDALLL 312
            + +  DEEWVTLD+KLLNW++++ K  VRT+TH+FTI+ LL E HG V DL++C  AFT+ANE+ DEM+TL  Y IKG  R  + P+ + +FYDF+P   D  LL
Sbjct:   35 LAMPSDEEWVTLDLKLLNWKFLDFKHRVRTTTHIFTIKNLLLEHHGRVADLIVCKEAFTEANELKDEMQTLKGYGIKGAPRGVDPPVMVPLFYDFKPIAYDEPLL 139
[Close]
BLAST of jgi.p|Trimin1|158093 vs. uniprot
Match: D8LEG3_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LEG3_ECTSI)

HSP 1 Score: 119 bits (299), Expect = 5.730e-32
Identity = 56/105 (53.33%), Postives = 76/105 (72.38%), Query Frame = 1 
Query:    1 MVVRGDEEWVTLDMKLLNWRYMNHKQAVRTSTHVFTIRRLLAERHGNVKDLVICHTAFTQANEMADEMKTLAEYSIKGK-RKDEEPLSIIIFYDFRPNNTDALLL 312
            + +  DEEWVTLD+KLLNW++++ K  VRT+TH+FTI+ LL E HG V DL++C  AFT+ANE+ DEM+TL  Y IKG  R  + P+ + +FYDF+P   D  LL
Sbjct:   35 LAMPSDEEWVTLDLKLLNWKFLDFKHRVRTTTHIFTIKNLLLEHHGRVADLIVCKGAFTEANELKDEMQTLKGYGIKGAPRGVDPPVMVPLFYDFKPIAYDEPLL 139
[Close]
BLAST of jgi.p|Trimin1|158093 vs. uniprot
Match: A0A6V1N8Z5_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A6V1N8Z5_HETAK)

HSP 1 Score: 114 bits (284), Expect = 3.810e-30
Identity = 55/101 (54.46%), Postives = 74/101 (73.27%), Query Frame = 1 
Query:   19 EEWVTLDMKLLNWRYMNHKQAVRTSTHVFTIRRLLAERHGNVKDLVICHTAFTQANEMADEMKTLAEYSIKGKRKDEEPLSII-IFYDFRPNNT-DALLLA 315
            EEWVTL + LLNW YMN +  V+TSTH+F I+  L ERHG +++L+IC  +F++ANEMADEMKTL +Y +KG  +D EP +   IFYDF+ ++  D LLL 
Sbjct:   45 EEWVTLQLNLLNWSYMNTEYRVKTSTHIFRIKNYLKERHGRIEELIICKDSFSEANEMADEMKTLEDYGVKGAPEDHEPPARCPIFYDFKQSDHHDPLLLV 145
[Close]
BLAST of jgi.p|Trimin1|158093 vs. uniprot
Match: A0A7S2V1Q2_9STRA (Hypothetical protein (Fragment) n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2V1Q2_9STRA)

HSP 1 Score: 98.6 bits (244), Expect = 1.840e-24
Identity = 39/72 (54.17%), Postives = 58/72 (80.56%), Query Frame = 1 
Query:   19 EEWVTLDMKLLNWRYMNHKQAVRTSTHVFTIRRLLAERHGNVKDLVICHTAFTQANEMADEMKTLAEYSIKG 234
            ++WVTLDM L+NW+YMN +  V+T+TH+FT++ +L E+HG V DLV+C  +F + NEM DEM+TLA+Y ++G
Sbjct:   40 DQWVTLDMNLMNWKYMNFQHRVKTTTHIFTLKNMLREKHGRVSDLVLCKDSFREENEMNDEMQTLADYGVEG 111
[Close]
BLAST of jgi.p|Trimin1|158093 vs. uniprot
Match: A0A1V9Y8X4_9STRA (Uncharacterized protein n=1 Tax=Thraustotheca clavata TaxID=74557 RepID=A0A1V9Y8X4_9STRA)

HSP 1 Score: 99.0 bits (245), Expect = 2.530e-24
Identity = 48/101 (47.52%), Postives = 68/101 (67.33%), Query Frame = 1 
Query:   19 EEWVTLDMKLLNWRYMNHKQAVRTSTHVFTIRRLLAERHGNVKDLVICHTAFTQANEMADEMKTLAEYSIKGKRKDEEPLSIIIFYDFRPNNTD-ALLLAS 318
            E++VTLD++LLNW Y+N K  V+TST +F ++  L +RHG V +L IC   F +ANE+ D+M TL EY I G    E+ +  +I+YDF+P   D  LLLA+
Sbjct:   38 EDYVTLDLRLLNWSYLNFKWKVKTSTRLFALKNELEKRHGQVTNLKICKDHFAEANELTDDMMTLREYGIDGAPSFEKEIVCLIYYDFKPKQHDNPLLLAT 138
[Close]
BLAST of jgi.p|Trimin1|158093 vs. uniprot
Match: T0PPP4_SAPDV (Uncharacterized protein n=2 Tax=Saprolegnia TaxID=4769 RepID=T0PPP4_SAPDV)

HSP 1 Score: 95.5 bits (236), Expect = 5.650e-23
Identity = 48/100 (48.00%), Postives = 65/100 (65.00%), Query Frame = 1 
Query:   22 EWVTLDMKLLNWRYMNHKQAVRTSTHVFTIRRLLAERHGNVKDLVICHTAFTQANEMADEMKTLAEYSIKGKRKDEEPLSIIIFYDFRPNNTD-ALLLAS 318
            E VTLDM+LLNW Y+N K  V+TST +F ++  + +RHG +  L IC   F +ANE+ DEM TL EY I G    E+ +  +I+YDF+P   D  LLLA+
Sbjct:   38 ELVTLDMRLLNWSYLNFKWKVKTSTRLFAVKNEIEKRHGPITSLKICKDHFAEANELTDEMLTLHEYGIDGAPAFEKEVVCLIYYDFKPTQHDNPLLLAT 137
[Close]
BLAST of jgi.p|Trimin1|158093 vs. uniprot
Match: A0A485K3I0_9STRA (Aste57867_661 protein n=1 Tax=Aphanomyces stellatus TaxID=120398 RepID=A0A485K3I0_9STRA)

HSP 1 Score: 95.5 bits (236), Expect = 6.120e-23
Identity = 44/101 (43.56%), Postives = 71/101 (70.30%), Query Frame = 1 
Query:   19 EEWVTLDMKLLNWRYMNHKQAVRTSTHVFTIRRLLAERHGNVKDLVICHTAFTQANEMADEMKTLAEYSIKGKRKDEEPLSIIIFYDFRPNNTD-ALLLAS 318
            EE+VTLDM+LLNW Y+N +   +TSTH+F+I++ + +RHG + +L IC   F ++NE+ D+M +L +Y I G  + ++ +  +I+YDF+P   D  LLLA+
Sbjct:   40 EEYVTLDMRLLNWSYLNFRFRTKTSTHLFSIKQEIEKRHGPITNLKICKDHFAESNELTDDMLSLHDYGIDGGPQHDKEVVCLIYYDFKPTQHDNPLLLAT 140
[Close]
BLAST of jgi.p|Trimin1|158093 vs. uniprot
Match: A0A7S1C5U2_9STRA (Hypothetical protein (Fragment) n=1 Tax=Bicosoecida sp. CB-2014 TaxID=1486930 RepID=A0A7S1C5U2_9STRA)

HSP 1 Score: 96.3 bits (238), Expect = 6.810e-23
Identity = 45/107 (42.06%), Postives = 69/107 (64.49%), Query Frame = 1 
Query:    1 MVVRGDEEWVTLDMKLLNWRYMNHKQAVRTSTHVFTIRRLLAERHGNVKDLVICHTAFTQANEMADEMKTLAEYSIKGKRKDEEPLSIIIFYDFRP-NNTDALLLAS 318
            +V   D +WVTLD++L+NW Y+NH+  VRT T +F+I++ L ERHG + +L +     T   E+ADEM+TL    + G  KD+ P+   + YDF+P ++ D LLL +
Sbjct:   44 LVAVDDTKWVTLDLRLVNWAYLNHELRVRTDTPLFSIKKRLVERHGRMSELRLYKEHVTPETELADEMQTLEAAGVPGAAKDDPPVRFALVYDFKPYDSADPLLLVA 150
[Close]
BLAST of jgi.p|Trimin1|158093 vs. uniprot
Match: A0A2P4Y6J3_9STRA (Uncharacterized protein n=1 Tax=Phytophthora palmivora var. palmivora TaxID=611791 RepID=A0A2P4Y6J3_9STRA)

HSP 1 Score: 94.0 bits (232), Expect = 1.250e-22
Identity = 47/108 (43.52%), Postives = 71/108 (65.74%), Query Frame = 1 
Query:    1 MVVRGDE-EWVTLDMKLLNWRYMNHKQAVRTSTHVFTIRRLLAERHGNVKDLVICHTAFTQANEMADEMKTLAEYSIKGKRKDEEPLSIIIFYDFRPNNTD-ALLLAS 318
            +++  D   +VTLDM+LLNW Y+N K   +T+T +F I++ + ++HG V DL IC   F++ANE+  +M TLAEY I+G  + E  +  +I YDF+P   D  LLLA+
Sbjct:    8 IIIEADPVHYVTLDMRLLNWSYLNFKFRTKTTTRLFAIKQQIQKQHGPVTDLKICKGHFSEANELKQDMMTLAEYGIEGAPEGEPDMVYLIHYDFKPEQHDNPLLLAT 115
[Close]
BLAST of jgi.p|Trimin1|158093 vs. uniprot
Match: A0A835Z1H9_9STRA (SF3 helicase domain-containing protein (Fragment) n=6 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z1H9_9STRA)

HSP 1 Score: 699 bits (1805), Expect = 1.230e-253
Identity = 352/358 (98.32%), Postives = 353/358 (98.60%), Query Frame = 1 
Query:    1 DEDFEKLLDVNKDIFSCQNGVVELATATLRPRVRKDMLTRAVNIDYNADSPRIPEVMQLLTDITLAAPNRLNRPALLERLLRILGYSITGHGREEIIVFLLGRSALNGKGIIESLLQQVLGCMFYQAPQSFLTACKAVSAGAVSSHMMALRGARVVHLDELPAGVALDAQMIKYISGGADISGRELFGTQTSFSPTAVPWANTNEMPIIKAEPAIMQRIEIIPCDAKFRTPGDAKFPYDANDKTHFIKNTKLRENLPVEAFLAVVVQAAKRWYEGGLGEKPACCKLACDAFAAENDTLQSWINDECELGPREGADPALILCSSAFSGYNNYCARQEPALPPIKKRDMHEQMAAKGFAK 1074
            DEDFEKLLDVNKDIFSCQNGVVELATATLRPRVRKDMLTRAVNIDYNADSPRIPEVMQLLTDITLAAPNRLNRPALLERLLRILGYSITGH REEIIVFLLGRSA NGKGIIESLLQQVLGCMFYQAPQSFLTACKAVSAG+ SSHMMALRGARVVHLDELPAGVALDAQMIKYISGGADISGRELFGTQTSFSPTAVPWANTNEMPIIKAEPAIMQRIEIIPCDAKFRTPGDAKFPYDANDKTHFIKNTKLRENLPVEAFLA VVQAAKRWYEGGLGEKPACCKLACDAFAAENDTLQSWINDECELGPREGADPALILCSSAFSGYNNY ARQEPALPPIKKRDMHEQMAAKGFAK
Sbjct:    9 DEDFEKLLDVNKDIFSCQNGVVELATATLRPRVRKDMLTRAVNIDYNADSPRIPEVMQLLTDITLAAPNRLNRPALLERLLRILGYSITGHVREEIIVFLLGRSARNGKGIIESLLQQVLGCMFYQAPQSFLTACKAVSAGSASSHMMALRGARVVHLDELPAGVALDAQMIKYISGGADISGRELFGTQTSFSPTAVPWANTNEMPIIKAEPAIMQRIEIIPCDAKFRTPGDAKFPYDANDKTHFIKNTKLRENLPVEAFLAGVVQAAKRWYEGGLGEKPACCKLACDAFAAENDTLQSWINDECELGPREGADPALILCSSAFSGYNNYRARQEPALPPIKKRDMHEQMAAKGFAK 366
[Close]
BLAST of jgi.p|Trimin1|158093 vs. uniprot
Match: A0A835YS19_9STRA (D5_N domain-containing protein n=5 Tax=Tribonema minus TaxID=303371 RepID=A0A835YS19_9STRA)

HSP 1 Score: 698 bits (1802), Expect = 7.910e-244
Identity = 358/384 (93.23%), Postives = 359/384 (93.49%), Query Frame = 1 
Query:    1 DEDFEKLLDVNKDIFSCQNGVVELATATLRPRVRKDMLTRAVNIDYNADSPRIPEVMQLLTDITLAAPNRLNRPALLERLLRILGYSITGHGREEIIVFLLGRSALNGKGIIESLLQQVLGCMFYQAPQSFLTACKAVSAGAVSSHMMALRGARVVHLDELPAGVALDAQMIKYISGGADISGRELFGTQTSFSPTAVPWANTNEMPIIKAEPAIMQRIEIIPCDAKFRTPGDAKFPYDANDKTHFIKNTKLRENLPVEAFLAVVVQAAKRWYEGGLGEKPACCKLACDAFAAENDTLQSWINDECELGPREGADPALILCSSAFSGYNNYCARQEPALPPIKKRDMHEQMAAKGFAKIDDYRKAHSQYNFKCVYARLKSAGGY 1152
            DEDFEKLLDVNKDIFSCQNGVVELATATLRPRVRKDMLTRAVNIDYNADSPRIPEVMQLLTDITLAAPNRLNRPALLERLLRILGYSITGH REEIIVFLLG SA NGKGIIESLLQQVLGCMFYQAPQSFLTACKAVSAGA SSHMMALR            G  +DAQMIKYISGGADISGRELFG QTSFSPTAVP ANTNEMPIIKAEPAIMQRIEIIPCDAKFRTPGDAKFPYDANDKTHFIKNTKLRENLPVEAFLAVVVQAAKRWYEGGLGEKPACCKLACDAFAAENDTLQSWINDECELGPREGADPALILCSSAFSGYNN  ARQEPALPPIKKRDMHEQMAAKGFAKIDDYRKAHSQ N KCVYA LKSAGGY
Sbjct:  614 DEDFEKLLDVNKDIFSCQNGVVELATATLRPRVRKDMLTRAVNIDYNADSPRIPEVMQLLTDITLAAPNRLNRPALLERLLRILGYSITGHVREEIIVFLLGCSARNGKGIIESLLQQVLGCMFYQAPQSFLTACKAVSAGAASSHMMALRAT---------GGRCVDAQMIKYISGGADISGRELFGKQTSFSPTAVPRANTNEMPIIKAEPAIMQRIEIIPCDAKFRTPGDAKFPYDANDKTHFIKNTKLRENLPVEAFLAVVVQAAKRWYEGGLGEKPACCKLACDAFAAENDTLQSWINDECELGPREGADPALILCSSAFSGYNNSRARQEPALPPIKKRDMHEQMAAKGFAKIDDYRKAHSQDNCKCVYAGLKSAGGY 988
[Close]
BLAST of jgi.p|Trimin1|158093 vs. uniprot
Match: A0A835Z1L1_9STRA (D5_N domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z1L1_9STRA)

HSP 1 Score: 199 bits (507), Expect = 8.430e-57
Identity = 130/357 (36.41%), Postives = 187/357 (52.38%), Query Frame = 1 
Query:    1 DEDFEKLLDVNKDIFSCQNGVVELATATLRPRVRKDMLTRAVNIDYNADSPRIPEVMQLLTDITLAAPNRLNRPALLERLLRILGYSITGHGREEIIVFLLGRSALNGKGIIESLLQQVLGCMFYQAPQSFLTACKAVSAGAVSSHMMALRGARVVHLDELPAGVALDAQMIKYISGGADISGRELFGTQTSFSPTAVPWANTNEMPIIKAEPAIMQRIEIIPCDAK-FRTPGDAKFPYDANDKTHFIKNTKLRENLPVEAFLAVVVQAAKRWYEGGLGEKPACCKLACDAFAAENDTLQSWINDECELGPREGADPALILCSSAFSGYNNYCARQEPALPPIKKRDMHEQMAAKGF 1068
            D+ F  LLD +KD+ S  +GVV+L TATLRPRVR D L  A++  ++ + P +  + + + D+TL+   RL RP  LE + R++GYSITGH REEIIV  +G  A N KG++  LL  VL  ++Y AP+S +       AGA SS M AL G R+  +DE+P     D Q  + ++GGA I  REL+  Q SF        N N    ++   A ++RI   P D +       +    D  +  H + + K++ NL   AF +  V  AK+WYE GLG  P CC         +N  +  WI + CE+G  EG      L +S    +N++CA + P    I       +M  +GF
Sbjct:   13 DKTFLNLLDADKDVLSVTDGVVDLRTATLRPRVRGDYLIYALSTPFDPEHPELHTIEKWMKDVTLS--ERLGRPEYLEFMQRLIGYSITGHTREEIIVMFIGNGA-NSKGVLHELLSDVLESLYYAAPRSIIVQTARGGAGAASSDMAALNGKRIGAVDEMPDEPLNDTQF-RLLAGGAGIPARELYSAQASFKNLCQIILNFNFPVQMRITHATLRRIMACPFDMQALPVVPMSGAALDPTNPRHILLDIKMKGNLSRAAFFSWAVAGAKKWYEEGLGPHPKCCADLRSHIMDDNADVGMWIAERCEVG--EG------LMASTKMAWNDFCASR-PEGNNITNASFRVEMGRRGF 356
[Close]
BLAST of jgi.p|Trimin1|158093 vs. uniprot
Match: A0A257JK46_9PROT (SF3 helicase domain-containing protein (Fragment) n=1 Tax=Alphaproteobacteria bacterium PA3 TaxID=2015571 RepID=A0A257JK46_9PROT)

HSP 1 Score: 115 bits (287), Expect = 2.060e-24
Identity = 105/377 (27.85%), Postives = 173/377 (45.89%), Query Frame = 1 
Query:   22 LDVNKDIFSCQNGVVELATATLRPRVRKDMLTRAVNIDYNADSPRIPEVMQLLTDITLAAPNRLNRPALLERLLRILGYSITGHGREEIIVFLLGRSALNGKGIIESLLQQVLGCMFYQAPQSFLTACKAVSAGAVSSHMMALRGARVVHLDELPAGVALDAQMIKYISGGADISGRELFGTQTSFSPTAVPWANTNEMPIIKAEP-AIMQRIEIIPCDAKFRTPGDAKFPYDANDKTHFIKNTKLRENLPVEAFLAVVVQAAKRWYEGGLGEKPACCKLACDAFAAENDTLQSWINDECELGPREGADPALILCSSAFSGYNNYCARQEPALPPIKKRDMHEQMAAKGFAKIDDYRKAHSQYNFKCVYARLKSAGG 1149
            LD    +    NGVV+L    L P      +TR    D++  S + P  ++ L  +       ++   LL      LGY++TG+  EEI++F +G  A NGK I  +++  +LG     AP   L + +    G   + M  L GAR+V ++ELPAG+ LD Q++K ++G   IS R L     ++ P   PW  TN  PI+K +   I +RI I+P    F            +++   ++   LRE    +  LA +V+ A+R+   GL   PA  K     +  ++D L  ++  EC       A  A +   + F  + N+C  ++  + P  K+   +++  +GF   D         N K  Y  L+++GG
Sbjct:  195 LDAKPLLLGVGNGVVDLRRKRLLPNEPGYFITRYCYADFDP-SAQCPSWLRSLDAMFQGDTATIDAVQLL------LGYTLTGYSTEEIMIFCVGFGA-NGKSIFGNVVAAILGDYSRTAPSQLLASRRTDDHGP-RNDMAMLDGARLVSINELPAGMHLDEQVVKQLAGREPISARFLHKEYFTYEPRFTPWVRTNHKPIVKGDDEGIWRRIVILPFRRTFAP----------HEQDPHLEGKLLRER---DGILAWMVEGAQRYLREGLKLSPAM-KRELAQYRTDSDMLGEFLA-ECTAT----ATGARVEQKTLFLSWQNWC--KDNGVQPGSKKTFTQRLKERGFPPKDS--------NGKRYYQGLRTSGG 533
[Close]
BLAST of jgi.p|Trimin1|158093 vs. uniprot
Match: A0A1Y1IMX7_KLENI (SF3 helicase domain-containing protein n=1 Tax=Klebsormidium nitens TaxID=105231 RepID=A0A1Y1IMX7_KLENI)

HSP 1 Score: 112 bits (280), Expect = 3.180e-23
Identity = 97/335 (28.96%), Postives = 150/335 (44.78%), Query Frame = 1 
Query:    1 DEDFEKLLDVNKDIFSCQNGVVELATATLRPRVRKDMLTRAVNIDYNADSPRIPEVMQLLTDITLAAPNRLNRPALLERLLRI-LGYSITGHGREEIIVFLLGRSALNGKGIIESLLQQVLGCMFYQAPQSFLTACKAV---SAGAVSSHMMALRGARVVHLDELPAGVALDAQMIKYISGGADISGRELFGTQTSFSPTAVPWANTNEMP-IIKAEPAIMQRIEIIPCDAKFRTPG--DAKFPYDANDKTHFIKNTKLRENLPVEAFLAVVVQAAKRWYEGG--------LGEKPACCKLACDAFAAENDTLQSWINDECELGPREGADPALIL 960
            D +  KL+D + D   C NGV++L T  L       + TR+  + Y   S         + D+        N    + R L++ LGY++TGH  EEI     G  + NGK  ++  LQ+  G   Y  P S     KA    + GA SSH++AL+GAR+   DE      +++  IK ++GG  ++ RELF    SF PT      TN  P I  A+  +++R+ ++P    ++     D   P+     TH    T L  +   E  L  VV+ +  WY           L   PA    A D +  E D ++ ++ + C++GP   A  A +L
Sbjct:  522 DPEMIKLMDCDIDSVGCPNGVLDLRTGILSFAHPSQLCTRSTGVRYMGLSHNTDRFDAFVMDL-------FNSDESIVRWLQLFLGYALTGHTSEEIFCIWYGAGS-NGKSALKMALQKAFGS--YYTPMSKDCIIKAGGKRAEGAASSHLVALKGARLALCDESEESQVINSACIKEMTGGGAVTCRELFQKCESFVPTHANVLLTNHKPSIADADGGLLRRVSLLPFRNSYKVAEEVDPNDPHSKPQSTHL--KTWLESSEGAEECLVWVVRGSVEWYARQSANPAAKVLAPLPAPMAAAFDEYLREFDDMRMFLKEFCDIGPTFVAPSADLL 844
[Close]
BLAST of jgi.p|Trimin1|158093 vs. uniprot
Match: UPI000AB7246B (Uncharacterized protein n=2 Tax=Croceicoccus mobilis TaxID=1703339 RepID=UPI000AB7246B)

HSP 1 Score: 110 bits (275), Expect = 1.320e-22
Identity = 97/301 (32.23%), Postives = 140/301 (46.51%), Query Frame = 1 
Query:   22 LDVNKDIFSCQNGVVELATATLRPRVRKDML-TRAVNIDYNADSPRIPEVMQLLTDITLAAPNRLNRPALLERLLRILGYSITGHGREEIIVFLLGRSALNGKGIIESLLQQVLGCMFYQAPQSFLTACKAVSAGAVSSHMMALRGARVVHLDELPAGVALDAQMIKYISGGADISGRELFGTQTSFSPTAVPWANTNEMPIIKAEP-AIMQRIEIIPCDAKFRTPG-----DAKFPYDANDKTHFIKNTKLRENLPVEAFLAVVVQAAKRWYEGG---LGEKPACCKLACDAFAAENDTL 894
            LD N  +    NGVV+L T  L P  R DML TR    DY+  +   P  +Q L ++           A +  + R LGY++TG   EEIIVF +G  A NGK I  +++ +++G     AP S L   +    G      M L GAR+V ++ELPAG+ +D Q +K ++G   IS REL+    +F P    W  TN  PIIK +   I +RI ++P   KF         +AK   + N    ++     +        L+  + A +R Y      LGE  A C +A  A    +  L
Sbjct:  450 LDANPMLLGVGNGVVDLTTGALVPN-RSDMLITRHCEADYDM-AATCPRWVQFLDEVFAGDQ------ATIHSVQRSLGYTLTGLNTEEIIVFCIGFGA-NGKSIFGNIVNRIIGGYSKVAPHSLLATRRRDDHGPRGDIAM-LEGARLVSVNELPAGMQMDEQAVKALAGREPISARELYEGFRTFDPRFTVWVRTNHRPIIKGDDDGIWRRIIVLPFRQKFEGASCDKHLEAKLWAERNGILRWMIEGARQYLATGNLSLSPTILAEQRQYRSDSDLLGEFLADCTIADPAGRVHDQEL 740
[Close]
BLAST of jgi.p|Trimin1|158093 vs. uniprot
Match: A0A4P6JVW9_9CHLR (SF3 helicase domain-containing protein n=1 Tax=Ktedonosporobacter rubrisoli TaxID=2509675 RepID=A0A4P6JVW9_9CHLR)

HSP 1 Score: 108 bits (270), Expect = 6.950e-22
Identity = 91/320 (28.44%), Postives = 144/320 (45.00%), Query Frame = 1 
Query:   40 IFSCQNGVVELATATLRPRVRKDMLTRAVNIDYNADSPRIPEVMQLLTDITLAAPNRLNRPALLERLLRILGYSITGHGREEIIVFLLGRSALNGKGIIESLLQQVLGCMFYQAPQSFLTACKAV-SAGAVSSHMMALRGARVVHLDELPAGVALDAQMIKYISGGADISGRELFGTQTSFSPTAVPWANTNEMPIIKA-EPAIMQRIEIIPCDAKFRTPGDAKFPYDANDKTHFIKNTKLRENLPVEAFLAVVVQAAKRWYEGGLGEKPACCKLACDAFAAENDTLQSWINDECELGPREGADPALILCSSAFSGYNNY 993
            + +  +GV++L T  LRP   +D +       +       P   Q L +I    P+R +  A L+RL    GYSITG   E +   L G    NGK  + ++L++VLG           T+     S GA + H+  L+G R++  +E   G  L+   IK+++GG++IS R+L G Q SF PT +    TN  P   A + A  +R  +I  D K R     K  Y+    +  +   K   +      LA +V+   RW + GL   P+   L  + +  E D L ++I D C + P      A +  S  ++ Y  +
Sbjct:  570 LLATPSGVLDLRTGQLRPGRPEDFIRTVCPTKWTGLETPCPRFEQFLQEIFEDKPDRTSVIAFLQRL---FGYSITGLTCEAVFPILFGEEGRNGKDTLLNVLREVLGPHAGAVSHDVFTSSDRFRSGGAPTPHLCDLQGKRLIWGNETRQGECLNVAQIKWLTGGSEISARQLHGEQFSFQPTHLMLLMTNYKPQADARDKAFWERACLI--DFKMRFVDRPKETYERKKDSTLLGRLKAERS----GILAWLVRGCLRWQQVGLNT-PSSVLLWTERYREEEDNLLAFIGDCCIVRP-----DAEVRASELYNAYKEW 874
[Close]
BLAST of jgi.p|Trimin1|158093 vs. uniprot
Match: A0A2D5XZC9_9ARCH (SF3 helicase domain-containing protein n=1 Tax=Candidatus Pacearchaeota archaeon TaxID=2026773 RepID=A0A2D5XZC9_9ARCH)

HSP 1 Score: 108 bits (269), Expect = 7.860e-22
Identity = 96/329 (29.18%), Postives = 157/329 (47.72%), Query Frame = 1 
Query:   22 LDVNKDIFSCQNGVVELATATLRPRVRKDMLTRAVNIDYNADSPRIPEVMQLLTDITLAAPNRLNRPALLERLLRILGYSITGHGREEIIVFLLGRSALNGKGIIESLLQQVLGCMFYQAPQSFLTACKAVSAGAVSSHMMALRGARVVHLDELPAGVALDAQMIKYISGGADISGRELFGTQTSFSPTAVPWANTNEMPIIK-AEPAIMQRIEIIPCDAKFRTPGDAKFPYDANDKTHFIKNTKLRENLPVEAFLAVVVQAAKRWYEGGLGEKPACCKLACDAFAAENDTLQSWINDECELGPREGADPALILCSSAFSGYNNYCARQ 1005
            LD +  + + +NG ++L T TLR   R D LT  ++IDY+ D+   P   Q L +I         +P ++E L R+ GY+ TG   E+ ++  +G+ A NGK    + +  VLG +    P S   A +  + G+ ++ + +LRG R+  + E  A   L   ++K  +GG  ++ R L+ +Q SF P  +    TN  P IK A+  I +RI +      F    D + P+          + KLR+  P    L  +V  A++WYEGGLG+ P   K A   +   +D L  +I     + P    D   IL +   + Y ++C  +
Sbjct:  452 LDRHPHLLNVRNGTIDLRTGTLRDHDRGDWLTHRLDIDYDPDA-EAPRWDQFLPEIFPT------QPEMVEWLQRVCGYAATGETVEQCLIVCVGKGA-NGKSAFWNAIGHVLGPLCGVVPFS---AFEKRAPGSSTADLASLRGKRLCLVQEGEANTTLAESVLKRATGGDLVAARNLYKSQMSFQPEFLIVMATNSAPRIKGADEGIWRRIRLSNWTRFFTE--DERDPW---------LSAKLRDESP--GILRWIVDGARQWYEGGLGDPPVI-KQASRNYRHTSDELAGFIG--MVIVPD---DDGSILGADLMAAYLDWCIEE 750
[Close]
BLAST of jgi.p|Trimin1|158093 vs. uniprot
Match: A0A381R4E2_9ZZZZ (SF3 helicase domain-containing protein n=1 Tax=marine metagenome TaxID=408172 RepID=A0A381R4E2_9ZZZZ)

HSP 1 Score: 105 bits (261), Expect = 8.780e-21
Identity = 83/334 (24.85%), Postives = 156/334 (46.71%), Query Frame = 1 
Query:    7 DFEKLLDVNKDIFSCQNGVVELATATLRPRVRKDMLTRAVNIDYNADSPRIPEVMQLLTDITLAAPNRLNRPALLERLLRILGYSITGHGREEIIVFLLGRSALNGKGIIESLLQQVLGCMFYQAPQSFLTACKAVSAGAVSSHMMALRGARVVHLDELPAGVALDAQMIKYISGGADISGRELFGTQTSFSPTAVPWANTNEMPIIKAEPAIMQRIEIIPCDAKFRTPGDAKFPYDANDKTHFIKNTKLRENLPVEAFLAVVVQAAKRWYEGGLGEK-PACCKLACDAFAAENDTLQSWINDECELGPREGAD---PALILCSSAFSGYNNYC 996
            DF+ +++ N D  + +NG ++L T  L  R   D  T  ++I+++ +  + P + + ++DI L     +N       L   +GYSITGH +E+      G    NGK ++  LL +  G  ++    S + + K  +AG  ++H+  ++  R   +DE      ++  ++K I+GG  +  R+L           VP   TN  P    +PA+ +R+ +I  +A+F    +    YD N+  H  K++ +   +     L+  V+ A +WY+ G   K P   K     F    + +  ++++ECEL   E       +L+L    ++ + +YC
Sbjct:  501 DFQDMINGNPDSIAVRNGNIDLRTGKLVNRRFDDYNTFFLDIEFD-EFMKTPNMDKFMSDIMLEQEEIINF------LSTFIGYSITGHNKEQKFSVWYGDKGSNGKSVLAKLLDKTFG-EYFTILDSEIFSVKKGTAGTATTHLNYIQDKRFGIMDESNKNEEMNEGLVKRITGGTKLRIRKLHKESELIEVVLVPIILTNFKPKFSNDPALFRRMILIEFEAQF-LDDETDIKYDKNNPRHKWKDSDIDNKISDNEVLSYFVRFATKWYQSGQKLKIPDKIKKYNKKFQHNCNVINKFLDNECELTTDENQKYFTSSLVL----YNKFIDYC 821
[Close]
BLAST of jgi.p|Trimin1|158093 vs. uniprot
Match: UPI001967E778 (phage/plasmid primase, P4 family n=1 Tax=Streptomyces olivoreticuli TaxID=68246 RepID=UPI001967E778)

HSP 1 Score: 103 bits (256), Expect = 3.570e-20
Identity = 96/350 (27.43%), Postives = 157/350 (44.86%), Query Frame = 1 
Query:   25 DVNKDIFSCQNGVVELATATLRPRVRKDMLTRAVNIDYNADSPRIPEVMQLLTDITLAAPNRLNRPALLERLLRILGYSITGHGREEIIVFLLGRSALNGKGIIESLLQQVLGCMFYQAPQSFLTACKAVSAGAVSSHMMALRGARVVHLDELPAGVALDAQMIKYISGGADISGRELFGTQTSFSPTAVPWANTNEMPIIKAEP-AIMQRIEIIPCDAKFRTPGDAKFPYDANDKTHFIKNTKLRENLPVEAFLAVVVQAAKRWYEGGLGEKPACCKLACDAFAAENDTLQSWINDECELGPREGADPALILCSS-AFSGYNNYC-ARQEPALPPIKKRDMHEQMAAKG 1065
            D   D+ + +NG V+L T  LRP  + D+LT A++IDYN  +   P     L +I    P     PA ++RL   +GY ITGH  E+    L G+ A NGK ++   +  V   +    P +     K+   G + + + ALRGAR+V   E  +G  +   ++K ++G   IS R L      F P+ +    TN  P  +++   + +R++++P    F             ++   +    L E    E   A  V+ A  WY GGL + P     A   +   +D L  ++      G  E AD A+++  + AF+ Y  +C A   PA     +R  ++ M  +G
Sbjct:  403 DNRPDLLNFKNGTVDLRTGRLRPHDQADLLTYALDIDYNPHAT-CPRWESFLAEIFPGMPEM---PAYIQRL---VGYGITGHTTEQSFGVLWGKGA-NGKSVLVDTMTSVFRAITRTTPFATFEERKS---GGIPNDIAALRGARLVMASEGESGKPMSESILKGVTGKDMISARFLRQEFFEFKPSFLLLLATNHKPKFRSQDDGLWRRVKLLPFKRWFAP----------EERDPDLDRKLLAE---AEGIAAWAVRGAMAWYRGGL-QDPQVIMGASQEYRETSDPLAGFLP-----GVLESADEAVVINGNDAFNAYLEWCEAENLPAKEQWTRRSFYDAMEERG 722
The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|158093 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A836CBV7_9STRA3.610e-73100.00Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A6H5JSB9_9PHAE1.270e-3253.33Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LEG3_ECTSI5.730e-3253.33Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6V1N8Z5_HETAK3.810e-3054.46Hypothetical protein n=1 Tax=Heterosigma akashiwo ... [more]
A0A7S2V1Q2_9STRA1.840e-2454.17Hypothetical protein (Fragment) n=1 Tax=Fibrocapsa... [more]
A0A1V9Y8X4_9STRA2.530e-2447.52Uncharacterized protein n=1 Tax=Thraustotheca clav... [more]
T0PPP4_SAPDV5.650e-2348.00Uncharacterized protein n=2 Tax=Saprolegnia TaxID=... [more]
A0A485K3I0_9STRA6.120e-2343.56Aste57867_661 protein n=1 Tax=Aphanomyces stellatu... [more]
A0A7S1C5U2_9STRA6.810e-2342.06Hypothetical protein (Fragment) n=1 Tax=Bicosoecid... [more]
A0A2P4Y6J3_9STRA1.250e-2243.52Uncharacterized protein n=1 Tax=Phytophthora palmi... [more]

Pages

back to top
BLAST of jgi.p|Trimin1|158093 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A835Z1H9_9STRA1.230e-25398.32SF3 helicase domain-containing protein (Fragment) ... [more]
A0A835YS19_9STRA7.910e-24493.23D5_N domain-containing protein n=5 Tax=Tribonema m... [more]
A0A835Z1L1_9STRA8.430e-5736.41D5_N domain-containing protein n=1 Tax=Tribonema m... [more]
A0A257JK46_9PROT2.060e-2427.85SF3 helicase domain-containing protein (Fragment) ... [more]
A0A1Y1IMX7_KLENI3.180e-2328.96SF3 helicase domain-containing protein n=1 Tax=Kle... [more]
UPI000AB7246B1.320e-2232.23Uncharacterized protein n=2 Tax=Croceicoccus mobil... [more]
A0A4P6JVW9_9CHLR6.950e-2228.44SF3 helicase domain-containing protein n=1 Tax=Kte... [more]
A0A2D5XZC9_9ARCH7.860e-2229.18SF3 helicase domain-containing protein n=1 Tax=Can... [more]
A0A381R4E2_9ZZZZ8.780e-2124.85SF3 helicase domain-containing protein n=1 Tax=mar... [more]
UPI001967E7783.570e-2027.43phage/plasmid primase, P4 family n=1 Tax=Streptomy... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Contig_5contigContig_5:1450560..1450886 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Tribonema minus UTEX_B_31562021-06-17
Properties
Property NameValue
ProteomeIdTrimin1|158093|e_gw1.5.167.1
Max annot lvl2759|Eukaryota
EggNOG OGs2CYNG@1|root,2S5BB@2759|Eukaryota
Evalue9.4e-33
Seed ortholog2880.D8LEG3
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionexpressed unknown protein
Ec32 orthologEc-21_004810.1
TranscriptId158415
TrackFilteredModels1
ProteinId158093
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|158093gene_2426Tribonema minus UTEX_B_3156 geneContig_5 1450560..1450886 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
exon_2426_1exon_2426_1Tribonema minus UTEX_B_3156 exonContig_5 1450560..1450886 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
CDS_2426CDS_2426Tribonema minus UTEX_B_3156 CDSContig_5 1450560..1450886 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|158093Trimin1|158093|e_gw1.5.167.1Tribonema minus UTEX_B_3156 polypeptideContig_5 1450560..1450886 +


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>mRNA_2426 ID=mRNA_2426|Name=jgi.p|Trimin1|158093|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=327bp|location=Sequence derived from alignment at Contig_5:1450560..1450886+ (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon.  
ATGGTGGTGAGAGGAGACGAGGAGTGGGTCACGCTGGACATGAAGCTGCT
GAACTGGCGGTACATGAACCACAAGCAAGCAGTCAGGACGTCCACTCACG
TGTTCACCATCAGGCGGCTCCTAGCGGAGAGGCACGGCAACGTCAAAGAC
CTTGTCATTTGCCACACCGCATTCACGCAAGCGAACGAAATGGCGGACGA
GATGAAGACGCTGGCGGAGTATAGCATCAAGGGCAAGAGAAAGGACGAGG
AACCGCTCTCCATTATCATCTTTTACGATTTCAGGCCGAACAACACAGAC
GCCCTCCTGTTGGCGTCATTCGATTGA
back to top

protein sequence of jgi.p|Trimin1|158093

>Trimin1|158093|e_gw1.5.167.1 ID=Trimin1|158093|e_gw1.5.167.1|Name=jgi.p|Trimin1|158093|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=109bp
MVVRGDEEWVTLDMKLLNWRYMNHKQAVRTSTHVFTIRRLLAERHGNVKD
LVICHTAFTQANEMADEMKTLAEYSIKGKRKDEEPLSIIIFYDFRPNNTD
ALLLASFD*
back to top

mRNA from alignment at Contig_5:1450560..1450886+

Legend: exonpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_2426 ID=mRNA_2426|Name=jgi.p|Trimin1|158093|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=327bp|location=Sequence derived from alignment at Contig_5:1450560..1450886+ (Tribonema minus UTEX_B_3156 )
ATGGTGGTGAGAGGAGACGAGGAGTGGGTCACGCTGGACATGAAGCTGCT
GAACTGGCGGTACATGAACCACAAGCAAGCAGTCAGGACGTCCACTCACG
TGTTCACCATCAGGCGGCTCCTAGCGGAGAGGCACGGCAACGTCAAAGAC
CTTGTCATTTGCCACACCGCATTCACGCAAGCGAACGAAATGGCGGACGA
GATGAAGACGCTGGCGGAGTATAGCATCAAGGGCAAGAGAAAGGACGAGG
AACCGCTCTCCATTATCATCTTTTACGATTTCAGGCCGAACAACACAGAC
GCCCTCCTGTTGGCGTCATTCGATTGA
back to top

Coding sequence (CDS) from alignment at Contig_5:1450560..1450886+

>mRNA_2426 ID=mRNA_2426|Name=jgi.p|Trimin1|158093|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=327bp|location=Sequence derived from alignment at Contig_5:1450560..1450886+ (Tribonema minus UTEX_B_3156 )
ATGGTGGTGAGAGGAGACGAGGAGTGGGTCACGCTGGACATGAAGCTGCT
GAACTGGCGGTACATGAACCACAAGCAAGCAGTCAGGACGTCCACTCACG
TGTTCACCATCAGGCGGCTCCTAGCGGAGAGGCACGGCAACGTCAAAGAC
CTTGTCATTTGCCACACCGCATTCACGCAAGCGAACGAAATGGCGGACGA
GATGAAGACGCTGGCGGAGTATAGCATCAAGGGCAAGAGAAAGGACGAGG
AACCGCTCTCCATTATCATCTTTTACGATTTCAGGCCGAACAACACAGAC
GCCCTCCTGTTGGCGTCATTCGATTGA
back to top