mRNA_2400 (mRNA) Tribonema minus UTEX_B_3156

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
Namejgi.p|Trimin1|158262
Unique NamemRNA_2400
TypemRNA
OrganismTribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Homology
BLAST of jgi.p|Trimin1|158262 vs. uniprot
Match: A0A835Z082_9STRA (Kinase-like domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z082_9STRA)

HSP 1 Score: 501 bits (1290), Expect = 1.860e-179
Identity = 247/247 (100.00%), Postives = 247/247 (100.00%), Query Frame = 1
Query:    1 YAVKMLTKAKMEPEDEANLLEEVNILRELKHPNIISIYQFYCQEPDNYYVIIEYMQGGELFDRIVKKQFYMEKEARDLCKALLGAIKCCHDRDIVHRDLKPENLLLTSDVDDANIKLADFGFATHLVSARSVLAILECCTPAYAAPEILRHKPYGTSVDMWSIGVIMYILLGGYPPFKGESRTRLSRKIRTGRFEVHNEYWGSISSDAKDLISELLTVSVTKVRWSRMLEFKVIRATWVKVSQTPAR 741
            YAVKMLTKAKMEPEDEANLLEEVNILRELKHPNIISIYQFYCQEPDNYYVIIEYMQGGELFDRIVKKQFYMEKEARDLCKALLGAIKCCHDRDIVHRDLKPENLLLTSDVDDANIKLADFGFATHLVSARSVLAILECCTPAYAAPEILRHKPYGTSVDMWSIGVIMYILLGGYPPFKGESRTRLSRKIRTGRFEVHNEYWGSISSDAKDLISELLTVSVTKVRWSRMLEFKVIRATWVKVSQTPAR
Sbjct:    1 YAVKMLTKAKMEPEDEANLLEEVNILRELKHPNIISIYQFYCQEPDNYYVIIEYMQGGELFDRIVKKQFYMEKEARDLCKALLGAIKCCHDRDIVHRDLKPENLLLTSDVDDANIKLADFGFATHLVSARSVLAILECCTPAYAAPEILRHKPYGTSVDMWSIGVIMYILLGGYPPFKGESRTRLSRKIRTGRFEVHNEYWGSISSDAKDLISELLTVSVTKVRWSRMLEFKVIRATWVKVSQTPAR 247          
BLAST of jgi.p|Trimin1|158262 vs. uniprot
Match: A0A835YZ60_9STRA (Kinase-like domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YZ60_9STRA)

HSP 1 Score: 347 bits (891), Expect = 3.520e-117
Identity = 177/244 (72.54%), Postives = 197/244 (80.74%), Query Frame = 1
Query:    1 YAVKMLTKAKMEPEDEANLLEEVNILRELKHPNIISIYQFYCQEPDNYYVIIEYMQGGELFDRIVKKQFYMEKEARDLCKALLGAIKCCHDRDIVHRDLKPENLLLTSDVDDANIKLADFGFATHLVSARSVLAILECCTPAYAAPEILRHKPYGTSVDMWSIGVIMYILLGGYPPFKGESRTRLSRKIRTGRFEVHNEYWGSISSDAKDLISELLTVSVTKVRWSRMLEFKVIRATWVKVSQT 732
            YAVKM+ KA + PEDEA+LLEEV ILR+L HPNII IYQFY QE DNYYVIIEYM+GGELFDRIVKKQFY EKEARDLCK LL AIK CHDRDIVHRDLKPENLLLTS+ DDA+IKLADFGFA  L  +   +   +C TPAY APEILRH+PYGTSVDMWSIGVI+YILLGGYPPF  E++TRL RKIR G+FE HNEYWGSISSDAKDLIS LLTV     + SR+   + +   W+  S T
Sbjct:   67 YAVKMVRKANLAPEDEADLLEEVKILRQLNHPNIIDIYQFYRQERDNYYVIIEYMRGGELFDRIVKKQFYTEKEARDLCKILLDAIKYCHDRDIVHRDLKPENLLLTSNDDDASIKLADFGFAKALNGS---MVTTQCGTPAYVAPEILRHRPYGTSVDMWSIGVIIYILLGGYPPFHDENQTRLFRKIRAGKFEFHNEYWGSISSDAKDLISRLLTVD----QHSRLTAREAVSHPWLLTSDT 303          
BLAST of jgi.p|Trimin1|158262 vs. uniprot
Match: A0A6H5K8A8_9PHAE (Protein kinase domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K8A8_9PHAE)

HSP 1 Score: 295 bits (754), Expect = 3.860e-96
Identity = 147/221 (66.52%), Postives = 169/221 (76.47%), Query Frame = 1
Query:    4 AVKMLTKAKMEPEDEANLLEEVNILRELKHPNIISIYQFYCQEPDNYYVIIEYMQGGELFDRIVKKQFYMEKEARDLCKALLGAIKCCHDRDIVHRDLKPENLLLTSDVDDANIKLADFGFATHLVSARSVLAILECCTPAYAAPEILRHKPYGTSVDMWSIGVIMYILLGGYPPFKGESRTRLSRKIRTGRFEVHNEYWGSISSDAKDLISELLTVSVTK 666
            AVK + +  +  EDE +LLEEV ILR LKHPN+I IYQF+  +PDNYYV IEYM+GGELFDRIVKK FY EKEARDLC+ LL A++ CHD  IVHRDLKPENLLLTS  DDAN+KLADFGFA  ++         +C TP Y APEILR + YGTSVDMWSIGVI+YILLGGYPPF  E++TRL RKI+ G F+ H EYW S SS+AKDLI  LLTV   K
Sbjct:   86 AVKCIERNNLPKEDEEDLLEEVRILRSLKHPNVIDIYQFFKDDPDNYYVSIEYMRGGELFDRIVKKAFYNEKEARDLCRILLDAVRYCHDLGIVHRDLKPENLLLTSQHDDANVKLADFGFARSIMGG---FVSTQCGTPGYVAPEILRAESYGTSVDMWSIGVIVYILLGGYPPFHDENQTRLFRKIKAGNFKFHPEYWQSTSSEAKDLIRRLLTVDPKK 303          
BLAST of jgi.p|Trimin1|158262 vs. uniprot
Match: A0A836CHL2_9STRA (Putative calcium/calmodulin-dependent protein kinase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CHL2_9STRA)

HSP 1 Score: 268 bits (684), Expect = 1.200e-85
Identity = 132/242 (54.55%), Postives = 171/242 (70.66%), Query Frame = 1
Query:    1 YAVKMLTKAKMEPEDEANLLEEVNILRELKHPNIISIYQFYCQEPDNYYVIIEYMQGGELFDRIVKKQFYMEKEARDLCKALLGAIKCCHDRDIVHRDLKPENLLLTSDVDDANIKLADFGFATHLVSARSVLAILECCTPAYAAPEILRHKPYGTSVDMWSIGVIMYILLGGYPPFKGESRTRLSRKIRTGRFEVHNEYWGSISSDAKDLISELLTVSVTKVRWSRMLEFKVIRATWVKVS 726
            YAVK + K  ++   +A+L++EV +LRE+ HPN++++YQFY +E D++YVI+EYM+GGELF+RIV KQ Y EKEAR +C+ LL  ++  HD D+VHRDLKP+NLLLTSD DDANIKLADFGFA  L   +       C TP Y APEIL H+PYG +VDMWS+G I+YILLGGY PF  +++TRL RKIR G +  H EYW  IS +AKDLI   L V   K    R+   + +   W+ VS
Sbjct:   70 YAVKCIKKQGLDELTKADLMDEVAVLREMAHPNVVNVYQFYPREKDHFYVIMEYMKGGELFERIVAKQVYTEKEARAVCRVLLATVRYLHDHDVVHRDLKPDNLLLTSDADDANIKLADFGFAKKLDGQKLTQL---CGTPNYIAPEILLHEPYGVTVDMWSLGCIIYILLGGYLPFVDDNQTRLFRKIRNGAYSFHPEYWSDISDEAKDLIRGCLNVDAEK----RLTAAQAMEHPWLAVS 304          
BLAST of jgi.p|Trimin1|158262 vs. uniprot
Match: D8LK21_ECTSI (Possible Ca2+/calmodulin-dependent protein kinase, EF-Hand protein superfamily n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LK21_ECTSI)

HSP 1 Score: 266 bits (681), Expect = 8.930e-85
Identity = 130/222 (58.56%), Postives = 165/222 (74.32%), Query Frame = 1
Query:    1 YAVKMLTKAKMEPEDEANLLEEVNILRELKHPNIISIYQFYCQEPDNYYVIIEYMQGGELFDRIVKKQFYMEKEARDLCKALLGAIKCCHDRDIVHRDLKPENLLLTSDVDDANIKLADFGFATHLVSARSVLAILECCTPAYAAPEILRHKPYGTSVDMWSIGVIMYILLGGYPPFKGESRTRLSRKIRTGRFEVHNEYWGSISSDAKDLISELLTVSVTK 666
            YAVK   +  +  EDE  LLEEV ILR L+H N+++IYQF+  +PD YY+++E M GGELFDRIV+K +Y E+EARDLC+ LL +++ CH+  IVHRDLKPENLLLTS  DDA IKLADFGFA  +++        +C +P Y APEILR  PYGTSVDMWS+GVI+Y LLGGYPPF  E++TRL R+I+ G F+ H+EYW + S +AKDLI +LL V   K
Sbjct:  109 YAVKRTVRRGLAKEDEKGLLEEVRILRLLQHSNVVAIYQFFQDDPDYYYMVLENMAGGELFDRIVQKSYYNEEEARDLCRVLLDSVRYCHELGIVHRDLKPENLLLTSKHDDAGIKLADFGFACSVLNGP---VSEQCGSPGYVAPEILRALPYGTSVDMWSVGVIIYTLLGGYPPFHDENQTRLFRRIKAGSFKFHDEYWSNTSLEAKDLIRKLLLVDPAK 327          
BLAST of jgi.p|Trimin1|158262 vs. uniprot
Match: A0A6V1U2B4_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A6V1U2B4_HETAK)

HSP 1 Score: 261 bits (666), Expect = 3.010e-83
Identity = 132/222 (59.46%), Postives = 161/222 (72.52%), Query Frame = 1
Query:    1 YAVKMLTKAKMEPEDEANLLEEVNILRELKHPNIISIYQFYCQEPDNYYVIIEYMQGGELFDRIVKKQFYMEKEARDLCKALLGAIKCCHDRDIVHRDLKPENLLLTSDVDDANIKLADFGFATHLVSARSVLAILECCTPAYAAPEILRHKPYGTSVDMWSIGVIMYILLGGYPPFKGESRTRLSRKIRTGRFEVHNEYWGSISSDAKDLISELLTVSVTK 666
            +AVK++ +  +  EDE  L+EEV ILR + HPNII ++ F+ +E   YY++ E MQGGELFDRIVKK FY EKEARDL K LL A+K CHD DIVHRDLKPENLLL+S  DDA+IK+ADFGFA  L   R      +C TP Y APEIL   PYG SVDMWS GVI YILLGGYPPF  E ++ L  KIR+G +E H EYW ++S DA+DLI ++LTV + +
Sbjct:   56 FAVKIVKRMDLPLEDEEALIEEVTILRGISHPNIIKLFDFF-EEKHFYYLVTELMQGGELFDRIVKKTFYNEKEARDLVKILLSAVKYCHDNDIVHRDLKPENLLLSSAEDDASIKIADFGFARLL---RGNTLTTQCGTPGYVAPEILNGVPYGKSVDMWSCGVITYILLGGYPPFHDEKQSNLFAKIRSGSYEFHPEYWQNVSKDAQDLIKKMLTVDIAQ 273          
BLAST of jgi.p|Trimin1|158262 vs. uniprot
Match: A0A7S2XV40_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2XV40_9STRA)

HSP 1 Score: 260 bits (665), Expect = 1.000e-82
Identity = 133/239 (55.65%), Postives = 168/239 (70.29%), Query Frame = 1
Query:    1 YAVKMLTKAKMEPEDEANLLEEVNILRELKHPNIISIYQFYCQEPDNYYVIIEYMQGGELFDRIVKKQFYMEKEARDLCKALLGAIKCCHDRDIVHRDLKPENLLLTSDVDDANIKLADFGFATHLVSARSVLAILECCTPAYAAPEILRHKPYGTSVDMWSIGVIMYILLGGYPPFKGESRTRLSRKIRTGRFEVHNEYWGSISSDAKDLISELLTVSVTKVRWSRMLEFKVIRATWV 717
            +AVK++ +  + P+DE  L+EEV IL+ + HPNII +Y+F+ +E   YY++IE M+GGELFDRIV+K +Y EKEARDL   LL AIK CHD  IVHRDLKPENLLLTS  DDA+IK+ADFGFA  +  + ++    +C TP Y APEIL   PYG +VDMWSIGVI YILLGGYPPF  E ++ L  KIR G F  H EYW  +S +AKDLI +LLTV   K    R+   + ++  WV
Sbjct:   54 FAVKIVKRMDLPPDDEEALIEEVTILKHVDHPNIIKLYEFF-EEKHFYYLVIELMEGGELFDRIVQKTYYNEKEARDLVHILLSAIKFCHDNGIVHRDLKPENLLLTSSKDDASIKIADFGFARQVKESNNLTT--QCGTPGYVAPEILNGVPYGLAVDMWSIGVITYILLGGYPPFHDEKQSNLFAKIRAGDFVFHPEYWDPVSEEAKDLIRKLLTVDPNK----RITAAEAMQHPWV 285          
BLAST of jgi.p|Trimin1|158262 vs. uniprot
Match: A0A448Z7J1_9STRA (Protein kinase domain-containing protein n=1 Tax=Pseudo-nitzschia multistriata TaxID=183589 RepID=A0A448Z7J1_9STRA)

HSP 1 Score: 259 bits (663), Expect = 3.770e-82
Identity = 127/239 (53.14%), Postives = 171/239 (71.55%), Query Frame = 1
Query:    1 YAVKMLTKAKMEPEDEANLLEEVNILRELKHPNIISIYQFYCQEPDNYYVIIEYMQGGELFDRIVKKQFYMEKEARDLCKALLGAIKCCHDRDIVHRDLKPENLLLTSDVDDANIKLADFGFATHLVSARSVLAILECCTPAYAAPEILRHKPYGTSVDMWSIGVIMYILLGGYPPFKGESRTRLSRKIRTGRFEVHNEYWGSISSDAKDLISELLTVSVTKVRWSRMLEFKVIRATWV 717
            +A+K++TKAK+  EDE  L +E+++L++++H +II +Y  + +EP +YY++ E M GGELFDRIV+K +Y EKEARD C  LL AI  CHD+ + HRDLKPENLLLTS+ DD++IK+ADFGFA  + + +S+    +C TP Y A EIL  +PY T  DMWSIGVI+YILLGGYPPF   ++  L RKIR G++E H EYWG +S DAKDLI  LLTV+  K    R+   K +   W+
Sbjct:  100 FAIKIVTKAKLSKEDEVALKDEIDVLKDMEHKHIIRLYDVF-EEPHHYYLVTEKMGGGELFDRIVQKSYYNEKEARDTCLILLSAIHYCHDQKVAHRDLKPENLLLTSEKDDSSIKIADFGFAKRVKTPKSLTT--QCGTPGYVAAEILEGQPYDTQADMWSIGVIVYILLGGYPPFIESNQRTLFRKIRKGQYEFHEEYWGQVSEDAKDLIRSLLTVNPDK----RLSATKALSNKWI 331          
BLAST of jgi.p|Trimin1|158262 vs. uniprot
Match: A0A7S2VC44_9STRA (Hypothetical protein n=2 Tax=Amphiprora paludosa TaxID=265537 RepID=A0A7S2VC44_9STRA)

HSP 1 Score: 258 bits (660), Expect = 4.480e-82
Identity = 129/239 (53.97%), Postives = 169/239 (70.71%), Query Frame = 1
Query:    1 YAVKMLTKAKMEPEDEANLLEEVNILRELKHPNIISIYQFYCQEPDNYYVIIEYMQGGELFDRIVKKQFYMEKEARDLCKALLGAIKCCHDRDIVHRDLKPENLLLTSDVDDANIKLADFGFATHLVSARSVLAILECCTPAYAAPEILRHKPYGTSVDMWSIGVIMYILLGGYPPFKGESRTRLSRKIRTGRFEVHNEYWGSISSDAKDLISELLTVSVTKVRWSRMLEFKVIRATWV 717
            YA+K++TKAK+  EDEA L +E+ +L+EL+HP+II +Y  + +E D YY++ E M GGELFDRIV+K +Y EKEARD C  L  AI+ CH + + HRDLKPENLLL S  +D+NIK+ADFGFA   +   S+    +C TP Y APEIL   PY T  DMWS+GVI+YILLGGYPPF  +++  L RKIR G++E H EYWG ++++AK LIS LLTVS TK    R+   K +   W+
Sbjct:   66 YAIKIVTKAKLSDEDEAALKDEITVLKELQHPSIIRLYDVF-EEKDYYYLVTEKMTGGELFDRIVQKSYYNEKEARDTCVILFKAIQYCHSKQVAHRDLKPENLLLQSADNDSNIKIADFGFAKKCLRPNSLTT--QCGTPGYVAPEILEGTPYDTKADMWSLGVIVYILLGGYPPFIEQNQRDLFRKIRKGQYEFHEEYWGQVTNEAKALISALLTVSSTK----RIAADKALAHEWI 297          
BLAST of jgi.p|Trimin1|158262 vs. uniprot
Match: A0A7S0SZL7_9STRA (Hypothetical protein n=1 Tax=Chromulina nebulosa TaxID=96789 RepID=A0A7S0SZL7_9STRA)

HSP 1 Score: 255 bits (651), Expect = 6.920e-82
Identity = 128/212 (60.38%), Postives = 157/212 (74.06%), Query Frame = 1
Query:   82 ELKHPNIISIYQFYCQEPDNYYVIIEYMQGGELFDRIVKKQFYMEKEARDLCKALLGAIKCCHDRDIVHRDLKPENLLLTSDVDDANIKLADFGFATHLVSARSVLAILECCTPAYAAPEILRHKPYGTSVDMWSIGVIMYILLGGYPPFKGESRTRLSRKIRTGRFEVHNEYWGSISSDAKDLISELLTVSVTKVRWSRMLEFKVIRATWV 717
            +L HPNII+ Y F+ +E  NYYV++EYM GGELFDRIVKK  Y EKEARD+ K L+ AIK CHDRD+VHRDLKPENLLLTS  DDA++K+ADFGFA   V   S L   +C TP Y APEIL +KPYG +VDMWSIGVI YI+LGGYPPF  ++   L RKIR G FE H EYW ++SSDAK+LI  LLTV+ +    +R+   +V++  W+
Sbjct:    1 QLNHPNIINCYDFF-EEEKNYYVVLEYMDGGELFDRIVKKTVYNEKEARDVVKILVSAIKYCHDRDVVHRDLKPENLLLTSREDDASLKIADFGFA---VRVNSNLLSTQCGTPGYIAPEILENKPYGKAVDMWSIGVITYIILGGYPPFHDDNMRNLFRKIRKGDFEFHPEYWNNVSSDAKNLIKGLLTVNAS----ARLTADQVLQHPWL 204          
The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|158262 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A835Z082_9STRA1.860e-179100.00Kinase-like domain-containing protein n=1 Tax=Trib... [more]
A0A835YZ60_9STRA3.520e-11772.54Kinase-like domain-containing protein n=1 Tax=Trib... [more]
A0A6H5K8A8_9PHAE3.860e-9666.52Protein kinase domain-containing protein n=1 Tax=E... [more]
A0A836CHL2_9STRA1.200e-8554.55Putative calcium/calmodulin-dependent protein kina... [more]
D8LK21_ECTSI8.930e-8558.56Possible Ca2+/calmodulin-dependent protein kinase,... [more]
A0A6V1U2B4_HETAK3.010e-8359.46Hypothetical protein n=1 Tax=Heterosigma akashiwo ... [more]
A0A7S2XV40_9STRA1.000e-8255.65Hypothetical protein n=1 Tax=Fibrocapsa japonica T... [more]
A0A448Z7J1_9STRA3.770e-8253.14Protein kinase domain-containing protein n=1 Tax=P... [more]
A0A7S2VC44_9STRA4.480e-8253.97Hypothetical protein n=2 Tax=Amphiprora paludosa T... [more]
A0A7S0SZL7_9STRA6.920e-8260.38Hypothetical protein n=1 Tax=Chromulina nebulosa T... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Contig_5contigContig_5:1226081..1230497 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Tribonema minus UTEX_B_31562021-06-17
Properties
Property NameValue
ProteomeIdTrimin1|158262|e_gw1.5.192.1
BRITEko00000,ko00001,ko01000,ko01001
KEGG Pathwayko04012,ko04020,ko04024,ko04066,ko04114,ko04217,ko04261,ko04310,ko04360,ko04713,ko04720,ko04722,ko04725,ko04728,ko04740,ko04745,ko04750,ko04911,ko04912,ko04916,ko04921,ko04922,ko04925,ko04934,ko04971,ko05031,ko05152,ko05200,ko05205,ko05214,map04012,map04020,map04024,map04066,map04114,map04217,map04261,map04310,map04360,map04713,map04720,map04722,map04725,map04728,map04740,map04745,map04750,map04911,map04912,map04916,map04921,map04922,map04925,map04934,map04971,map05031,map05152,map05200,map05205,map05214
KEGG koko:K04515
EC2.7.11.17
Descriptioncalmodulin-dependent protein kinase activity
COG categoryS
Max annot lvl2759|Eukaryota
EggNOG OGsKOG0033@1|root,KOG0033@2759|Eukaryota
Evalue2.08e-82
Seed ortholog2850.Phatr34071
Hectar predicted targeting categoryother localisation
TranscriptId158584
TrackFilteredModels1
ProteinId158262
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|158262gene_2400Tribonema minus UTEX_B_3156 geneContig_5 1226081..1230497 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|158262Trimin1|158262|e_gw1.5.192.1Tribonema minus UTEX_B_3156 polypeptideContig_5 1226081..1230497 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
exon_2400_1exon_2400_1Tribonema minus UTEX_B_3156 exonContig_5 1226081..1226257 +
exon_2400_2exon_2400_2Tribonema minus UTEX_B_3156 exonContig_5 1227386..1227511 +
exon_2400_3exon_2400_3Tribonema minus UTEX_B_3156 exonContig_5 1228168..1228259 +
exon_2400_4exon_2400_4Tribonema minus UTEX_B_3156 exonContig_5 1229676..1229736 +
exon_2400_5exon_2400_5Tribonema minus UTEX_B_3156 exonContig_5 1230210..1230497 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
CDS_2400CDS_2400Tribonema minus UTEX_B_3156 CDSContig_5 1226081..1226257 +


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>mRNA_2400 ID=mRNA_2400|Name=jgi.p|Trimin1|158262|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=744bp|location=Sequence derived from alignment at Contig_5:1226081..1230497+ (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon.  
TACGCAGTCAAGATGTTGACGAAGGCGAAAATGGAACCAGAGGACGAGGC
CAACTTGCTGGAGGAAGTGAACATTCTTCGCGAGCTCAAGCACCCCAACA
TCATCAGCATCTACCAGTTCTACTGCCAGGAGCCCGACAACTACTACGTC
ATCATCGAGTACATGCAGGGAGGCGAGCTGTTCGACCGCATTGTCAAGAA
GCAGTTCTATATGGAGAAGGAGGCGCGCGACCTGTGCAAGGCCCTCCTCG
GCGCCATCAAGTGCTGCCACGACAGGGACATCGTGCACCGCGACCTCAAG
CCGGAGAACCTGCTGCTGACCAGCGATGTCGACGACGCCAACATCAAACT
GGCGGACTTCGGCTTCGCCACGCACCTGGTGAGTGCGCGCAGCGTCCTGG
CGATCTTGGAGTGCTGCACGCCGGCGTACGCGGCGCCGGAGATCCTGCGC
CACAAGCCCTACGGCACATCCGTGGACATGTGGAGCATCGGCGTGATCAT
GTACATCCTGCTGGGCGGCTACCCGCCGTTCAAAGGGGAAAGCCGGACGC
GCCTGTCCCGCAAGATCCGCACGGGCAGGTTCGAGGTCCACAACGAGTAC
TGGGGCAGCATCTCCAGCGACGCCAAGGACCTCATCAGCGAGCTCCTGAC
GGTCAGCGTCACCAAGGTGAGATGGAGTAGGATGCTGGAGTTTAAGGTGA
TAAGAGCAACATGGGTGAAGGTATCACAAACGCCGGCAAGGTGA
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protein sequence of jgi.p|Trimin1|158262

>Trimin1|158262|e_gw1.5.192.1 ID=Trimin1|158262|e_gw1.5.192.1|Name=jgi.p|Trimin1|158262|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=248bp
YAVKMLTKAKMEPEDEANLLEEVNILRELKHPNIISIYQFYCQEPDNYYV
IIEYMQGGELFDRIVKKQFYMEKEARDLCKALLGAIKCCHDRDIVHRDLK
PENLLLTSDVDDANIKLADFGFATHLVSARSVLAILECCTPAYAAPEILR
HKPYGTSVDMWSIGVIMYILLGGYPPFKGESRTRLSRKIRTGRFEVHNEY
WGSISSDAKDLISELLTVSVTKVRWSRMLEFKVIRATWVKVSQTPAR*
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mRNA from alignment at Contig_5:1226081..1230497+

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_2400 ID=mRNA_2400|Name=jgi.p|Trimin1|158262|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=4417bp|location=Sequence derived from alignment at Contig_5:1226081..1230497+ (Tribonema minus UTEX_B_3156 )
TACGCAGTCAAGATGTTGACGAAGGCGAAAATGGAACCAGAGGACGAGGC CAACTTGCTGGAGGAAGTGAACATTCTTCGCGAGCTCAAGCACCCCAACA TCATCAGCATCTACCAGTTCTACTGCCAGGAGCCCGACAACTACTACGTC ATCATCGAGTACATGCAGGGAGGCGAGGTCAGTGCACTCACATGTACACC TGTGTACTCATGCGCACCTGTATACTCATGTGTACACCCGTGTATTCATG TATGTACTATGTATGTCGTTTTGCGCGATGTCGCCAACCGTGTTTTATTT TCTCATGTTCTCGTGTACTCACGTGCGCACCGCTGCCTCATATCCCACTC TTACCCCCAGAAAGAGCATTTGTTCTAGTTCAACGTCCGTGCGTACAAGC ACGGTGCGAGCCCGCACATGGATGTCATCACTGCGATATGTCATTGCTGC GCTCAGGAGCGACAGCTCCGAATCACGTCGAGCGCTGCCAGTGAGTCCAA CAGAGTCTGGTGACGCGTTGACACTGCGCTGTGACTGGTGCCGCACGCTG CGGCACCAGGGCGCGCGGCAAGATAAGGGGGCAGCGCCCCGCGGCCGCCG CGTTCTTGCGCGTAGCGCGGAGTATTGCGCAATGTACCCAACTTCAACCT CAATCCTGACCCTGGCCTCTTAGGGATATGACGTTCAACCGCTGCAAGAA ACCTTGCATCGAGCGCGTGTGCGCGTGTCCCCAGTAGCGCTTTCAAGTCG GTCGAGGTGCTGCGCACGTTGCTGCCATTGCTGTATCGTCCGTCGAGAGT GGAAAGCGAACGCAGCCGCTGGAGCGCACTTCAGCAGCAGTCCGGGCTAC AGACTGAGTGTGTGAAAGAAAGACAACGGCGAGATCGCGCGTGCCGCCGG CTGAACCGCAGCAGAGCGTGCCTCGTTACCATTAGCACGGAGTGCAGAGC TGAAGGATGGCAAGCAGCGGCGGAGAAAGTTTGCGGGGCATGGGGGTTTT GGGGGGGGGAATGGGGGGCTTGGAGGGGACAGCGTCAAAAGTGGGCAACT TGAACAATAGAGCGGAAGCTTCCGCTTTCCATCGCGACGCGTGCGTCCTT GGCGTGTGGTGGTCTGCGTGGACAGCTGCAGCAGTGCACTGCAAGGACGG GGACAAATGGAGCACCTCATGTGCTAAGCGCTGCTGCCGCGTGCGTGGCA CGCGCACAACAATTCTGCGCGCGTTGAGCTGTGCGCATGCGTACGCATGC GTGCTGCTCGCCCGAACCTGAATCTGCTGCGTGTATGTCTGCGCGCGCGC TGCAGCTGTTCGACCGCATTGTCAAGAAGCAGTTCTATATGGAGAAGGAG GCGCGCGACCTGTGCAAGGCCCTCCTCGGCGCCATCAAGTGCTGCCACGA CAGGGACATCGTGCACCGCGACCTCAAGCCGGTGAGCTGTGCCAGTCTAT GTCTATGATCATTAAGGGGAAGTACGCTCGAATGCCTATGCCTTGACAGA CATGCATGCACACGTGGATCTGAATGCGTGCACACGTTGCACCTCTCCAC TGCTGCTGTGCTGCACAAGGCTCGTGGCTGCACTGTTCGATGCATGTATC ATTGACGAAGACAAAACTGGAGTTGTCCTTGGAACTTGAAGTACTTGAGG GCCTGACCGAGCATTGCCATGGTATTATGGTGTAGTGAGCGTTTCACTGA GAGTGCATCCCCCATTTCACATGTCTGCAAAGTCATATGCATGCACTGAC ACAAAGCGGCTTCACCTACAACTTCAAGTGTGCCGTCACTGGGCGGCACA TCAAGTTAGAACTTCTTGCGCAGAGGCGCAAGCAGACCTGCACCGACAAT GCCAAAACCTGCTTTGATGAATTTTACGGCCTTGCACTCCTCTGCTGCAT CATGAGCTCCATGCCTGGCCTTCGTCATCGGCCAGCTGTGTGAACTCCAG TTGTCCTCACCATGTAGTTCACATGTACTCATGCATCGGACTGCAGGCCT GCTCGGGTGTGCACTGGTGCGCATCTGTAGTCACAACGCCCTTCTGACTC CTTTTGCTGCTGCTGCTGCTGCTTGAGAGTCACACAGGAGAACCTGCTGC TGACCAGCGATGTCGACGACGCCAACATCAAACTGGCGGACTTCGGCTTC GCCACGCACCTGGTGAGTGCGCGCAGCGTGTTTGAAGTGCGCGTTGGAGC AGCGTATATCATATACGTGTACAAAGCAGTGTGCACGTGCTTGGGCACCT CATACAGCAAGGCAGCTGGTCTGGTGAGATTGTTGATTGAAGGACACTGG AAGTTTACCATGTAGTAATTTGAAGTGCACTGCCAACGCGGTGTTTCAAA GTACTGTTTGCGCGAGCGTGGGCGGCCTTGGCGTCGTGCTCAGCCTGGTG GAGCCCTGAGGCACACTTGAAGTACAAATCACAGCACACTCACGGCTAGA GCGGTCAATCCCCAGGCACACGCCAAGGTGGCCGCGCTAGCGTGAGCACA CCTTGACGCTGAGCGCTGCTGCCTGCCCTGCGGCACCTGCAGCCGGCACC CCACTGCCGCAATCCCGTGGGATGCAGAGACGCTTAGCTCAGCCTTTGAT GGCATGTATATGCTTGCGGTCCTTGCATCGATCGGAGTTGTGTTTTGAGG TGCTCGCCTCGCACGTTCTCAGAGTACTTAACGTTCGCTCGAGGGCCGAA GCCCCTGCATCATGCAGAGTATAGTATGTGCAGTGTAGACACCATACCGT TAGCGAATGGCGCCCAGCGCACACAGGGTGGGCCTAGGCGCATCCCATCT GGAGCCAACTACAACTAGCCCCACCCCTAATAGTACTGCTACTACTGCCA CAACTTCTACCACTACCGGTACCATTATTACCCTCCCCGGCTGTTGCGGA ATTCCCCAGCAGCTGCCATGAGCAGCTGCCATGGCAGTGCTCGACTGCCC TCAAGCTCCAGCGCACATGTCCGTCCCCAGCTCGCGGGCGATACTCCAGC GCCATGGCACTGTGATTGTAGCAGTCGTGGGCGGCATCAGGTCCCACAAT AGTGCCCGCACAGGTGGGTCCGGCGAAGCTGCTGCTGCTGCTGTCAAGCC CGCAAGGCCGAACGCGCTGCAGCCGCCAACTGCATCCTGATGCTGGCAAC ACTTCAGAGGAGCGATTGTAACAATCATGGGCGCCATCAGGCCCCAAGAT CATGGTACCGCCGCGGGCGTGCCGTGCATGATGCTGTTCGCACCCTCTCG CCAACGAATGCGGCACCTACGAGGGGCTGCACACCCCCTGAGCATGTACC CCCTGTGGGACGACTACAACAAATGGGGTTTCTGTGTCTTTGCCGCGCTA GAGGATGTTATTAATAGCCTCTCAGAGGCTAGAAGGGCGTGCGCGCTGTC GATCTACGTACGTGTTGCCCCCTGCTTTGCTTTTTGCGCGCTGCGCTGTC GCCGGCGTTTGCTAATGACTCGCATCACTTTGCCGCGCCGGCGGCTGGCG TCGGAGCGTTTGCTGACCGTTGCTGCTGCTGCTGCTGCTGCTGCTGCTGC TGCTGCTGCTGCTGCTTTGGTACATGGCATTGCGCAGAACGGTAGCCTGG CGATCTTGGAGTGCTGCACGCCGGCGTACGCGGCGCCGGAGATCCTGCGC CACAAGGTGAGAGGGGGGCATGCGACTTGCTGGCATGCGCATGTGTTTGG GGCATGCGGCGGTGTGTGTGTGGGGGGGTCCAAGGAGGCGGGGGTTGGGG GGGGGTCAAGAGTTGTTGGGGAGGGGGGGGGCATGAGATGTTCAGGGACT CGGAGGGGGGGGGCACACAGATTGTCCAAGAGTTTCATGAGGCGTTCGAG GGGGGCGCATGAGCTGCCTAGCCTGAGGGGGGCCCAAAAGGTGTTAGAGC GGGTATGCAAAGTGTTGGGGGGGGGGGGGCGTGCGCGGGTGCTCGTGCGC TGCCGTGATGACAGCCCCCATTGGGCATGAATGGGGGCTGCCGGCACTGA GGGGCAGGTTTGAGAACTGAGGAAAACTGACGGAAGAGTGGTATCGGGTT CGGTTGCACCTTGATGCAGTCGCAGGGATTGCAAACCTAACGTTAGCTGA ATTGTAACTTCAACCTGACCTTGTCGCAGCCCTACGGCACATCCGTGGAC ATGTGGAGCATCGGCGTGATCATGTACATCCTGCTGGGCGGCTACCCGCC GTTCAAAGGGGAAAGCCGGACGCGCCTGTCCCGCAAGATCCGCACGGGCA GGTTCGAGGTCCACAACGAGTACTGGGGCAGCATCTCCAGCGACGCCAAG GACCTCATCAGCGAGCTCCTGACGGTCAGCGTCACCAAGGTGAGATGGAG TAGGATGCTGGAGTTTAAGGTGATAAGAGCAACATGGGTGAAGGTATCAC AAACGCCGGCAAGGTGA
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Coding sequence (CDS) from alignment at Contig_5:1226081..1230497+

>mRNA_2400 ID=mRNA_2400|Name=jgi.p|Trimin1|158262|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=744bp|location=Sequence derived from alignment at Contig_5:1226081..1230497+ (Tribonema minus UTEX_B_3156 )
TACGCAGTCAAGATGTTGACGAAGGCGAAAATGGAACCAGAGGACGAGGC
CAACTTGCTGGAGGAAGTGAACATTCTTCGCGAGCTCAAGCACCCCAACA
TCATCAGCATCTACCAGTTCTACTGCCAGGAGCCCGACAACTACTACGTC
ATCATCGAGTACATGCAGGGAGGCGAGCTGTTCGACCGCATTGTCAAGAA
GCAGTTCTATATGGAGAAGGAGGCGCGCGACCTGTGCAAGGCCCTCCTCG
GCGCCATCAAGTGCTGCCACGACAGGGACATCGTGCACCGCGACCTCAAG
CCGGAGAACCTGCTGCTGACCAGCGATGTCGACGACGCCAACATCAAACT
GGCGGACTTCGGCTTCGCCACGCACCTGGTGAGTGCGCGCAGCGTCCTGG
CGATCTTGGAGTGCTGCACGCCGGCGTACGCGGCGCCGGAGATCCTGCGC
CACAAGCCCTACGGCACATCCGTGGACATGTGGAGCATCGGCGTGATCAT
GTACATCCTGCTGGGCGGCTACCCGCCGTTCAAAGGGGAAAGCCGGACGC
GCCTGTCCCGCAAGATCCGCACGGGCAGGTTCGAGGTCCACAACGAGTAC
TGGGGCAGCATCTCCAGCGACGCCAAGGACCTCATCAGCGAGCTCCTGAC
GGTCAGCGTCACCAAGGTGAGATGGAGTAGGATGCTGGAGTTTAAGGTGA
TAAGAGCAACATGGGTGAAGGTATCACAAACGCCGGCAAGGTGA
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