mRNA_24 (mRNA) Tribonema minus UTEX_B_3156
Overview
Homology
BLAST of jgi.p|Trimin1|146602 vs. uniprot
Match: A0A836CDV5_9STRA (Uncharacterized protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CDV5_9STRA) HSP 1 Score: 171 bits (433), Expect = 4.450e-54 Identity = 85/85 (100.00%), Postives = 85/85 (100.00%), Query Frame = 1 Query: 1 SHTGRLGDRIRVLRERCLEGLGPVVFERAYRYLKDMEEPDIEGEESYGESSLGEGRGVAGLTEILGPSKLHYYTLLDQLIFIENS 255 SHTGRLGDRIRVLRERCLEGLGPVVFERAYRYLKDMEEPDIEGEESYGESSLGEGRGVAGLTEILGPSKLHYYTLLDQLIFIENS Sbjct: 1 SHTGRLGDRIRVLRERCLEGLGPVVFERAYRYLKDMEEPDIEGEESYGESSLGEGRGVAGLTEILGPSKLHYYTLLDQLIFIENS 85
BLAST of jgi.p|Trimin1|146602 vs. uniprot
Match: D8LPU9_ECTSI (Serine/threonine protein kinase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LPU9_ECTSI) HSP 1 Score: 85.1 bits (209), Expect = 2.040e-17 Identity = 48/84 (57.14%), Postives = 58/84 (69.05%), Query Frame = 1 Query: 7 TGRLGDRIRVLRERCLEGLGPVVFERAYRYLKDMEE-PDIEGEESYGESSLGEGRGVAGLTEILGPSKLHYYTLLDQLIFIENS 255 GRL DRIR LRERC GLG FERAY YLK EE +++G S E R V GLT+I+G +K+HYY+L+DQLIFIEN+ Sbjct: 1292 AGRLADRIRTLRERCCLGLGADAFERAYGYLKAQEELEELDGGCSSSLDVDREERLVRGLTDIIGQNKVHYYSLIDQLIFIENT 1375
BLAST of jgi.p|Trimin1|146602 vs. uniprot
Match: A0A7S1TTW5_9STRA (Hypothetical protein n=1 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1TTW5_9STRA) HSP 1 Score: 84.0 bits (206), Expect = 2.460e-17 Identity = 48/90 (53.33%), Postives = 62/90 (68.89%), Query Frame = 1 Query: 1 SHTGRLGDRIRVLRERCLEGLGPVVFERAYRYLK------DMEEPDIEGE-ESYGESSLGEGRGVAGLTEILGPSKLHYYTLLDQLIFIE 249 S TGRLGDRIR+L++RC +GLGP VF AY YLK D +EP EG ESY + G+ R + LT ILG KLHY++L+DQL+F++ Sbjct: 249 SPTGRLGDRIRLLQKRCEDGLGPDVFASAYSYLKKLDEEMDEDEPSFEGGGESYNDEDKGD-RVLRELTSILGEDKLHYWSLIDQLLFMK 337
BLAST of jgi.p|Trimin1|146602 vs. uniprot
Match: A0A7S2WGN2_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2WGN2_9STRA) HSP 1 Score: 75.9 bits (185), Expect = 4.930e-15 Identity = 45/101 (44.55%), Postives = 63/101 (62.38%), Query Frame = 1 Query: 1 SHTGRLGDRIRVLRERCLEGLGPVVFERAYRYLKDMEE-----------PDIEGEESYGESSLGEG-----RGVAGLTEILGPSKLHYYTLLDQLIFIENS 255 S +GRL DRI VLR+RC+EGLG FERA++YLK ++E P ++G S G S+ +G R + L ILG ++HY TL+DQLIF+E++ Sbjct: 107 SPSGRLADRIWVLRQRCIEGLGQERFERAHKYLKALQEAEDLSDEDASKPGLDGRGSRGVESMVDGSSGSDRADSELETILGRDRMHYSTLIDQLIFMEDT 207
BLAST of jgi.p|Trimin1|146602 vs. uniprot
Match: A0A8J2SGK3_9STRA (Hypothetical protein n=1 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A8J2SGK3_9STRA) HSP 1 Score: 60.5 bits (145), Expect = 9.410e-9 Identity = 37/98 (37.76%), Postives = 56/98 (57.14%), Query Frame = 1 Query: 1 SHTGRLGDRIRVLRERCLEGLGPVVFERAYRYLKDMEEPDIE-------------GEESYGESSLGEGRGVAGLTEILGPSKLHYYTLLDQLIFIENS 255 S +GRL R+++L+ERC+ +G F RAY YLK +++ D + G ++Y E + E + A L ILGP K+H L+DQL+F+E S Sbjct: 909 SPSGRLEQRLQILKERCIGQMGARQFRRAYDYLKSVQDADDDALDYDVDDAGLEIGGDAYDEQADAETQ--AKLLAILGPDKVHLAPLVDQLLFMEES 1004
BLAST of jgi.p|Trimin1|146602 vs. uniprot
Match: F0YAV9_AURAN (Protein kinase domain-containing protein n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0YAV9_AURAN) HSP 1 Score: 58.5 bits (140), Expect = 4.500e-8 Identity = 34/91 (37.36%), Postives = 54/91 (59.34%), Query Frame = 1 Query: 13 RLGDRIRVLRERCLEGLGPVVFERAYRYLKDMEEPDIE----------GEESYGESSLGEGRGVAGLTEILGPSKLHYYTLLDQLIFIENS 255 R DRI++LR+RC++ LG F+ A+ +LK + D + G E +G + + A L +ILGP K+H+ +L+DQLIF+E+S Sbjct: 994 RPADRIQLLRQRCIKALGYDQFQAAHAFLKAANDADDDVVDDDDALEAGGEQFGGLHDSDEQTQARLVQILGPDKVHFSSLIDQLIFMEDS 1084
BLAST of jgi.p|Trimin1|146602 vs. uniprot
Match: A0A7S3HJZ2_9STRA (Hypothetical protein n=1 Tax=Spumella elongata TaxID=89044 RepID=A0A7S3HJZ2_9STRA) HSP 1 Score: 57.8 bits (138), Expect = 8.380e-8 Identity = 35/87 (40.23%), Postives = 53/87 (60.92%), Query Frame = 1 Query: 1 SHTGRLGDRIRVLRERCLEGLGPVVFERAYRYLKDMEEPDIEGEESYGESSLG--EGRGVAGLTEILGPSKLHYYTLLDQLIFIENS 255 S +GRL DRI LR+RC E LG F AY +LK EE + +G ++ + + E + ++ + ILG K HY +L++QLIF+E + Sbjct: 935 SPSGRLSDRIERLRQRCTEALGRDAFRDAYYFLKQHEE-ESQGYDNGRDLNDDDYEAKKISRMRAILGEGKAHYMSLIEQLIFMEET 1020
BLAST of jgi.p|Trimin1|146602 vs. uniprot
Match: A0A7S1CGE0_9STRA (Hypothetical protein n=1 Tax=Bicosoecida sp. CB-2014 TaxID=1486930 RepID=A0A7S1CGE0_9STRA) HSP 1 Score: 50.8 bits (120), Expect = 2.200e-5 Identity = 33/87 (37.93%), Postives = 50/87 (57.47%), Query Frame = 1 Query: 7 TGRLGDRIRVLRERCLEGLGPVVFERAYRYLKDM--EEPDIEGEESYGESSLGEGRGVAGLTEILGPSKL--HYYTLLDQLIFIENS 255 +GRL DR+R +R+RC+ LGP +FE+ Y +LK E + G E GE + GL ++LG + Y L++QL+ +ENS Sbjct: 324 SGRLEDRMRRVRDRCVHDLGPELFEKVYFFLKAKLWEPEEASGMEVGGEGYEDDVVVEQGLRKLLGDRRRVQQYRELVEQLLLMENS 410
BLAST of jgi.p|Trimin1|146602 vs. uniprot
Match: A0A7S1CG72_9STRA (Hypothetical protein n=1 Tax=Bicosoecida sp. CB-2014 TaxID=1486930 RepID=A0A7S1CG72_9STRA) HSP 1 Score: 50.8 bits (120), Expect = 2.230e-5 Identity = 33/87 (37.93%), Postives = 50/87 (57.47%), Query Frame = 1 Query: 7 TGRLGDRIRVLRERCLEGLGPVVFERAYRYLKDM--EEPDIEGEESYGESSLGEGRGVAGLTEILGPSKL--HYYTLLDQLIFIENS 255 +GRL DR+R +R+RC+ LGP +FE+ Y +LK E + G E GE + GL ++LG + Y L++QL+ +ENS Sbjct: 389 SGRLEDRMRRVRDRCVHDLGPELFEKVYFFLKAKLWEPEEASGMEVGGEGYEDDVVVEQGLRKLLGDRRRVQQYRELVEQLLLMENS 475 The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|146602 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 9
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
This mRNA is a part of the following gene feature(s):
The following exon feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
spliced messenger RNA >mRNA_24 ID=mRNA_24|Name=jgi.p|Trimin1|146602|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=255bp|location=Sequence derived from alignment at Contig_3:211400..211654- (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon. TCTCACACGGGCAGGCTGGGGGACAGGATCCGGGTGCTGCGCGAGCGGTGback to top protein sequence of jgi.p|Trimin1|146602 >Trimin1|146602|gw1.3.319.1 ID=Trimin1|146602|gw1.3.319.1|Name=jgi.p|Trimin1|146602|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=85bp SHTGRLGDRIRVLRERCLEGLGPVVFERAYRYLKDMEEPDIEGEESYGESback to top mRNA from alignment at Contig_3:211400..211654- Legend: exonpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_24 ID=mRNA_24|Name=jgi.p|Trimin1|146602|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=255bp|location=Sequence derived from alignment at Contig_3:211400..211654- (Tribonema minus UTEX_B_3156 )back to top Coding sequence (CDS) from alignment at Contig_3:211400..211654- >mRNA_24 ID=mRNA_24|Name=jgi.p|Trimin1|146602|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=255bp|location=Sequence derived from alignment at Contig_3:211400..211654- (Tribonema minus UTEX_B_3156 )back to top |