mRNA_24 (mRNA) Tribonema minus UTEX_B_3156

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
Namejgi.p|Trimin1|146602
Unique NamemRNA_24
TypemRNA
OrganismTribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Homology
BLAST of jgi.p|Trimin1|146602 vs. uniprot
Match: A0A836CDV5_9STRA (Uncharacterized protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CDV5_9STRA)

HSP 1 Score: 171 bits (433), Expect = 4.450e-54
Identity = 85/85 (100.00%), Postives = 85/85 (100.00%), Query Frame = 1
Query:    1 SHTGRLGDRIRVLRERCLEGLGPVVFERAYRYLKDMEEPDIEGEESYGESSLGEGRGVAGLTEILGPSKLHYYTLLDQLIFIENS 255
            SHTGRLGDRIRVLRERCLEGLGPVVFERAYRYLKDMEEPDIEGEESYGESSLGEGRGVAGLTEILGPSKLHYYTLLDQLIFIENS
Sbjct:    1 SHTGRLGDRIRVLRERCLEGLGPVVFERAYRYLKDMEEPDIEGEESYGESSLGEGRGVAGLTEILGPSKLHYYTLLDQLIFIENS 85          
BLAST of jgi.p|Trimin1|146602 vs. uniprot
Match: D8LPU9_ECTSI (Serine/threonine protein kinase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LPU9_ECTSI)

HSP 1 Score: 85.1 bits (209), Expect = 2.040e-17
Identity = 48/84 (57.14%), Postives = 58/84 (69.05%), Query Frame = 1
Query:    7 TGRLGDRIRVLRERCLEGLGPVVFERAYRYLKDMEE-PDIEGEESYGESSLGEGRGVAGLTEILGPSKLHYYTLLDQLIFIENS 255
             GRL DRIR LRERC  GLG   FERAY YLK  EE  +++G  S       E R V GLT+I+G +K+HYY+L+DQLIFIEN+
Sbjct: 1292 AGRLADRIRTLRERCCLGLGADAFERAYGYLKAQEELEELDGGCSSSLDVDREERLVRGLTDIIGQNKVHYYSLIDQLIFIENT 1375          
BLAST of jgi.p|Trimin1|146602 vs. uniprot
Match: A0A7S1TTW5_9STRA (Hypothetical protein n=1 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1TTW5_9STRA)

HSP 1 Score: 84.0 bits (206), Expect = 2.460e-17
Identity = 48/90 (53.33%), Postives = 62/90 (68.89%), Query Frame = 1
Query:    1 SHTGRLGDRIRVLRERCLEGLGPVVFERAYRYLK------DMEEPDIEGE-ESYGESSLGEGRGVAGLTEILGPSKLHYYTLLDQLIFIE 249
            S TGRLGDRIR+L++RC +GLGP VF  AY YLK      D +EP  EG  ESY +   G+ R +  LT ILG  KLHY++L+DQL+F++
Sbjct:  249 SPTGRLGDRIRLLQKRCEDGLGPDVFASAYSYLKKLDEEMDEDEPSFEGGGESYNDEDKGD-RVLRELTSILGEDKLHYWSLIDQLLFMK 337          
BLAST of jgi.p|Trimin1|146602 vs. uniprot
Match: A0A7S2WGN2_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2WGN2_9STRA)

HSP 1 Score: 75.9 bits (185), Expect = 4.930e-15
Identity = 45/101 (44.55%), Postives = 63/101 (62.38%), Query Frame = 1
Query:    1 SHTGRLGDRIRVLRERCLEGLGPVVFERAYRYLKDMEE-----------PDIEGEESYGESSLGEG-----RGVAGLTEILGPSKLHYYTLLDQLIFIENS 255
            S +GRL DRI VLR+RC+EGLG   FERA++YLK ++E           P ++G  S G  S+ +G     R  + L  ILG  ++HY TL+DQLIF+E++
Sbjct:  107 SPSGRLADRIWVLRQRCIEGLGQERFERAHKYLKALQEAEDLSDEDASKPGLDGRGSRGVESMVDGSSGSDRADSELETILGRDRMHYSTLIDQLIFMEDT 207          
BLAST of jgi.p|Trimin1|146602 vs. uniprot
Match: A0A8J2SGK3_9STRA (Hypothetical protein n=1 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A8J2SGK3_9STRA)

HSP 1 Score: 60.5 bits (145), Expect = 9.410e-9
Identity = 37/98 (37.76%), Postives = 56/98 (57.14%), Query Frame = 1
Query:    1 SHTGRLGDRIRVLRERCLEGLGPVVFERAYRYLKDMEEPDIE-------------GEESYGESSLGEGRGVAGLTEILGPSKLHYYTLLDQLIFIENS 255
            S +GRL  R+++L+ERC+  +G   F RAY YLK +++ D +             G ++Y E +  E +  A L  ILGP K+H   L+DQL+F+E S
Sbjct:  909 SPSGRLEQRLQILKERCIGQMGARQFRRAYDYLKSVQDADDDALDYDVDDAGLEIGGDAYDEQADAETQ--AKLLAILGPDKVHLAPLVDQLLFMEES 1004          
BLAST of jgi.p|Trimin1|146602 vs. uniprot
Match: F0YAV9_AURAN (Protein kinase domain-containing protein n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0YAV9_AURAN)

HSP 1 Score: 58.5 bits (140), Expect = 4.500e-8
Identity = 34/91 (37.36%), Postives = 54/91 (59.34%), Query Frame = 1
Query:   13 RLGDRIRVLRERCLEGLGPVVFERAYRYLKDMEEPDIE----------GEESYGESSLGEGRGVAGLTEILGPSKLHYYTLLDQLIFIENS 255
            R  DRI++LR+RC++ LG   F+ A+ +LK   + D +          G E +G     + +  A L +ILGP K+H+ +L+DQLIF+E+S
Sbjct:  994 RPADRIQLLRQRCIKALGYDQFQAAHAFLKAANDADDDVVDDDDALEAGGEQFGGLHDSDEQTQARLVQILGPDKVHFSSLIDQLIFMEDS 1084          
BLAST of jgi.p|Trimin1|146602 vs. uniprot
Match: A0A7S3HJZ2_9STRA (Hypothetical protein n=1 Tax=Spumella elongata TaxID=89044 RepID=A0A7S3HJZ2_9STRA)

HSP 1 Score: 57.8 bits (138), Expect = 8.380e-8
Identity = 35/87 (40.23%), Postives = 53/87 (60.92%), Query Frame = 1
Query:    1 SHTGRLGDRIRVLRERCLEGLGPVVFERAYRYLKDMEEPDIEGEESYGESSLG--EGRGVAGLTEILGPSKLHYYTLLDQLIFIENS 255
            S +GRL DRI  LR+RC E LG   F  AY +LK  EE + +G ++  + +    E + ++ +  ILG  K HY +L++QLIF+E +
Sbjct:  935 SPSGRLSDRIERLRQRCTEALGRDAFRDAYYFLKQHEE-ESQGYDNGRDLNDDDYEAKKISRMRAILGEGKAHYMSLIEQLIFMEET 1020          
BLAST of jgi.p|Trimin1|146602 vs. uniprot
Match: A0A7S1CGE0_9STRA (Hypothetical protein n=1 Tax=Bicosoecida sp. CB-2014 TaxID=1486930 RepID=A0A7S1CGE0_9STRA)

HSP 1 Score: 50.8 bits (120), Expect = 2.200e-5
Identity = 33/87 (37.93%), Postives = 50/87 (57.47%), Query Frame = 1
Query:    7 TGRLGDRIRVLRERCLEGLGPVVFERAYRYLKDM--EEPDIEGEESYGESSLGEGRGVAGLTEILGPSKL--HYYTLLDQLIFIENS 255
            +GRL DR+R +R+RC+  LGP +FE+ Y +LK    E  +  G E  GE    +     GL ++LG  +    Y  L++QL+ +ENS
Sbjct:  324 SGRLEDRMRRVRDRCVHDLGPELFEKVYFFLKAKLWEPEEASGMEVGGEGYEDDVVVEQGLRKLLGDRRRVQQYRELVEQLLLMENS 410          
BLAST of jgi.p|Trimin1|146602 vs. uniprot
Match: A0A7S1CG72_9STRA (Hypothetical protein n=1 Tax=Bicosoecida sp. CB-2014 TaxID=1486930 RepID=A0A7S1CG72_9STRA)

HSP 1 Score: 50.8 bits (120), Expect = 2.230e-5
Identity = 33/87 (37.93%), Postives = 50/87 (57.47%), Query Frame = 1
Query:    7 TGRLGDRIRVLRERCLEGLGPVVFERAYRYLKDM--EEPDIEGEESYGESSLGEGRGVAGLTEILGPSKL--HYYTLLDQLIFIENS 255
            +GRL DR+R +R+RC+  LGP +FE+ Y +LK    E  +  G E  GE    +     GL ++LG  +    Y  L++QL+ +ENS
Sbjct:  389 SGRLEDRMRRVRDRCVHDLGPELFEKVYFFLKAKLWEPEEASGMEVGGEGYEDDVVVEQGLRKLLGDRRRVQQYRELVEQLLLMENS 475          
The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|146602 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 9
Match NameE-valueIdentityDescription
A0A836CDV5_9STRA4.450e-54100.00Uncharacterized protein (Fragment) n=1 Tax=Tribone... [more]
D8LPU9_ECTSI2.040e-1757.14Serine/threonine protein kinase n=1 Tax=Ectocarpus... [more]
A0A7S1TTW5_9STRA2.460e-1753.33Hypothetical protein n=1 Tax=Phaeomonas parva TaxI... [more]
A0A7S2WGN2_9STRA4.930e-1544.55Hypothetical protein n=1 Tax=Rhizochromulina marin... [more]
A0A8J2SGK3_9STRA9.410e-937.76Hypothetical protein n=1 Tax=Pelagomonas calceolat... [more]
F0YAV9_AURAN4.500e-837.36Protein kinase domain-containing protein n=1 Tax=A... [more]
A0A7S3HJZ2_9STRA8.380e-840.23Hypothetical protein n=1 Tax=Spumella elongata Tax... [more]
A0A7S1CGE0_9STRA2.200e-537.93Hypothetical protein n=1 Tax=Bicosoecida sp. CB-20... [more]
A0A7S1CG72_9STRA2.230e-537.93Hypothetical protein n=1 Tax=Bicosoecida sp. CB-20... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Contig_3contigContig_3:211400..211654 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Tribonema minus UTEX_B_31562021-06-17
Properties
Property NameValue
ProteomeIdTrimin1|146602|gw1.3.319.1
BRITEko00000,ko01000,ko01001,ko03036,ko03400
KEGG koko:K08857
EC2.7.11.1
Descriptionprotein serine/threonine kinase activity
COG categoryT
Max annot lvl2759|Eukaryota
EggNOG OGsKOG0589@1|root,KOG0589@2759|Eukaryota
Evalue2.89e-09
Seed ortholog44056.XP_009037732.1
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionSerine/threonine protein kinase
Ec32 orthologEc-18_002570.1
TranscriptId146924
TrackFilteredModels1
ProteinId146602
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|146602gene_24Tribonema minus UTEX_B_3156 geneContig_3 211400..211654 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
exon_24_1exon_24_1Tribonema minus UTEX_B_3156 exonContig_3 211400..211654 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
CDS_24CDS_24Tribonema minus UTEX_B_3156 CDSContig_3 211400..211654 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|146602Trimin1|146602|gw1.3.319.1Tribonema minus UTEX_B_3156 polypeptideContig_3 211400..211654 -


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>mRNA_24 ID=mRNA_24|Name=jgi.p|Trimin1|146602|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=255bp|location=Sequence derived from alignment at Contig_3:211400..211654- (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon.  
TCTCACACGGGCAGGCTGGGGGACAGGATCCGGGTGCTGCGCGAGCGGTG
CCTGGAGGGGTTGGGGCCAGTCGTTTTTGAGCGCGCGTACCGTTACTTGA
AGGACATGGAGGAGCCTGACATAGAGGGGGAGGAGAGTTACGGGGAGAGT
AGCCTGGGGGAGGGGAGGGGGGTGGCGGGGCTGACGGAGATTCTGGGCCC
CAGCAAGCTGCACTATTACACGCTGCTGGACCAGCTGATCTTCATTGAGA
ACTCG
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protein sequence of jgi.p|Trimin1|146602

>Trimin1|146602|gw1.3.319.1 ID=Trimin1|146602|gw1.3.319.1|Name=jgi.p|Trimin1|146602|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=85bp
SHTGRLGDRIRVLRERCLEGLGPVVFERAYRYLKDMEEPDIEGEESYGES
SLGEGRGVAGLTEILGPSKLHYYTLLDQLIFIENS
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mRNA from alignment at Contig_3:211400..211654-

Legend: exonpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_24 ID=mRNA_24|Name=jgi.p|Trimin1|146602|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=255bp|location=Sequence derived from alignment at Contig_3:211400..211654- (Tribonema minus UTEX_B_3156 )
TCTCACACGGGCAGGCTGGGGGACAGGATCCGGGTGCTGCGCGAGCGGTG CCTGGAGGGGTTGGGGCCAGTCGTTTTTGAGCGCGCGTACCGTTACTTGA AGGACATGGAGGAGCCTGACATAGAGGGGGAGGAGAGTTACGGGGAGAGT AGCCTGGGGGAGGGGAGGGGGGTGGCGGGGCTGACGGAGATTCTGGGCCC CAGCAAGCTGCACTATTACACGCTGCTGGACCAGCTGATCTTCATTGAGA ACTCG
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Coding sequence (CDS) from alignment at Contig_3:211400..211654-

>mRNA_24 ID=mRNA_24|Name=jgi.p|Trimin1|146602|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=255bp|location=Sequence derived from alignment at Contig_3:211400..211654- (Tribonema minus UTEX_B_3156 )
TCTCACACGGGCAGGCTGGGGGACAGGATCCGGGTGCTGCGCGAGCGGTG
CCTGGAGGGGTTGGGGCCAGTCGTTTTTGAGCGCGCGTACCGTTACTTGA
AGGACATGGAGGAGCCTGACATAGAGGGGGAGGAGAGTTACGGGGAGAGT
AGCCTGGGGGAGGGGAGGGGGGTGGCGGGGCTGACGGAGATTCTGGGCCC
CAGCAAGCTGCACTATTACACGCTGCTGGACCAGCTGATCTTCATTGAGA
ACTCG
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